Rmu_sc0010180.1_g000003

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010180.1
OG0000308
Physical Location & Seq
Forward (+)
7285 .. 7626
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010180.1_g000003.1.cds

Sequence Viewer

Length: 342 bp
atggcaattgatgcaatggccgcgcgtctcgctgcctctcttgctctggcagaggggaagaggcctgtggatttgcgtccttccaagggactacgacaacaggaggctttcatggtgggaaagcttctcacagcgcaggactatactcgccgctcgtttctggggatgttccaatctgcatggagggtgaatggcactctccgggtggaggaaactggagaagatgaccgtgttttgttctccttttccaaaccggctgacagagttaggatttggaagggaggaccatggggcttcaacaaagctttgattgcacttgcagagtatgacggcgtcggatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

113

Amino Acids

12.52

Weight (kDa)

9.76

Isoelectric Point (pI)

43.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 153
AccII CGCG 2 cut(s) 23, 25
AciI CCGC 2 cut(s) 21, 151
AcoI YGGCCR 1 cut(s) 18
AcyI GRCGYC 1 cut(s) 333
AfiI CCNNNNNNNGG 2 cut(s) 86, 208
AgsI TTSAA 1 cut(s) 298
AluBI AGCT 2 cut(s) 124, 305
AluI AGCT 2 cut(s) 124, 305
Alw26I GTCTC 1 cut(s) 32
AoxI GGCC 2 cut(s) 18, 62
ApeKI GCWGC 1 cut(s) 32
AspLEI GCGC 2 cut(s) 25, 136
AspS9I GGNCC 1 cut(s) 284
AsuC2I CCSGG 1 cut(s) 203
AsuHPI GGTGA 1 cut(s) 199
AvaII GGWCC 1 cut(s) 284
BbvI GCAGC 1 cut(s) 19
BcnI CCSGG 1 cut(s) 203
BcoDI GTCTC 1 cut(s) 32
BisI GCNGC 3 cut(s) 21, 33, 151
BlsI GCNGC 3 cut(s) 22, 34, 152
Bme1390I CCNGG 1 cut(s) 203
Bme18I GGWCC 1 cut(s) 284
BmgT120I GGNCC 1 cut(s) 284
BmrFI CCNGG 1 cut(s) 203
BpmI CTGGAG 1 cut(s) 237
BpuMI CCSGG 1 cut(s) 203
BsaHI GRCGYC 1 cut(s) 333
BsaJI CCNNGG 2 cut(s) 84, 287
Bsc4I CCNNNNNNNGG 2 cut(s) 86, 208
Bse118I RCCGGY 1 cut(s) 253
Bse1I ACTGG 1 cut(s) 220
Bse3DI GCAATG 1 cut(s) 21
BseDI CCNNGG 2 cut(s) 84, 287
BseGI GGATG 1 cut(s) 171
BseLI CCNNNNNNNGG 2 cut(s) 86, 208
BseMI GCAATG 1 cut(s) 21
BseNI ACTGG 1 cut(s) 220
BseXI GCAGC 1 cut(s) 19
Bsh1236I CGCG 2 cut(s) 23, 25
BshFI GGCC 2 cut(s) 20, 64
BsiSI CCGG 2 cut(s) 202, 254
BslFI GGGAC 1 cut(s) 102
BslI CCNNNNNNNGG 2 cut(s) 86, 208
BsmAI GTCTC 1 cut(s) 32
BsmBI CGTCTC 1 cut(s) 32
BsmFI GGGAC 1 cut(s) 102
BsnI GGCC 2 cut(s) 20, 64
Bsp19I CCATGG 1 cut(s) 287
BspACI CCGC 2 cut(s) 21, 151
BspANI GGCC 2 cut(s) 20, 64
BspFNI CGCG 2 cut(s) 23, 25
BsrBI CCGCTC 1 cut(s) 153
BsrDI GCAATG 1 cut(s) 21
BsrFI RCCGGY 1 cut(s) 253
BsrI ACTGG 1 cut(s) 220
BssAI RCCGGY 1 cut(s) 253
BssECI CCNNGG 2 cut(s) 84, 287
BssNI GRCGYC 1 cut(s) 333
BssT1I CCWWGG 2 cut(s) 84, 287
Bst4CI ACNGT 1 cut(s) 230
Bst6I CTCTTC 1 cut(s) 53
BstACI GRCGYC 1 cut(s) 333
BstAPI GCANNNNNTGC 1 cut(s) 11
BstDSI CCRYGG 1 cut(s) 287
BstF5I GGATG 1 cut(s) 171
BstFNI CGCG 2 cut(s) 23, 25
BstHHI GCGC 2 cut(s) 25, 136
BstMAI GTCTC 1 cut(s) 32
BstMWI GCNNNNNNNGC 5 cut(s) 11, 20, 29, 41, 311
BstSCI CCNGG 1 cut(s) 201
BstUI CGCG 2 cut(s) 23, 25
BstV1I GCAGC 1 cut(s) 19
BsuRI GGCC 2 cut(s) 20, 64
BtgI CCRYGG 1 cut(s) 287
BtsCI GGATG 1 cut(s) 171
CfoI GCGC 2 cut(s) 25, 136
Cfr10I RCCGGY 1 cut(s) 253
Cfr13I GGNCC 1 cut(s) 284
CseI GACGC 3 cut(s) 14, 65, 322
CviAII CATG 3 cut(s) 112, 180, 288
CviJI RGCY 7 cut(s) 20, 64, 107, 124, 257, 294, 305
CviKI_1 RGCY 7 cut(s) 20, 64, 107, 124, 257, 294, 305
EaeI YGGCCR 1 cut(s) 18
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
Eco130I CCWWGG 2 cut(s) 84, 287
Eco147I AGGCCT 1 cut(s) 64
Eco47I GGWCC 1 cut(s) 284
EcoT14I CCWWGG 2 cut(s) 84, 287
ErhI CCWWGG 2 cut(s) 84, 287
Esp3I CGTCTC 1 cut(s) 32
FaeI CATG 3 cut(s) 115, 183, 291
FaiI YATR 5 cut(s) 113, 144, 181, 289, 327
FaqI GGGAC 1 cut(s) 102
FatI CATG 3 cut(s) 111, 179, 287
Fnu4HI GCNGC 3 cut(s) 21, 33, 151
FokI GGATG 1 cut(s) 178
Fsp4HI GCNGC 3 cut(s) 21, 33, 151
GlaI GCGC 2 cut(s) 24, 135
GluI GCNGC 3 cut(s) 21, 33, 151
GsuI CTGGAG 1 cut(s) 237
HaeIII GGCC 2 cut(s) 20, 64
HapII CCGG 2 cut(s) 202, 254
HgaI GACGC 3 cut(s) 14, 65, 322
HhaI GCGC 2 cut(s) 25, 136
Hin1I GRCGYC 1 cut(s) 333
Hin1II CATG 3 cut(s) 115, 183, 291
Hin6I GCGC 2 cut(s) 23, 134
HinP1I GCGC 2 cut(s) 23, 134
HindIII AAGCTT 2 cut(s) 122, 303
HpaII CCGG 2 cut(s) 202, 254
HphI GGTGA 1 cut(s) 199
Hpy188I TCNGA 1 cut(s) 338
Hpy99I CGWCG 1 cut(s) 338
HpyAV CCTTC 2 cut(s) 90, 271
HpyCH4III ACNGT 1 cut(s) 230
HpyCH4V TGCA 4 cut(s) 14, 179, 314, 320
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 20, 29, 41, 311
Hsp92I GRCGYC 1 cut(s) 333
Hsp92II CATG 3 cut(s) 115, 183, 291
HspAI GCGC 2 cut(s) 23, 134
LpnPI CCDG 8 cut(s) 32, 78, 86, 122, 146, 201, 215, 267
Lsp1109I GCAGC 1 cut(s) 19
MbiI CCGCTC 1 cut(s) 153
MboII GAAGA 2 cut(s) 70, 233
MfeI CAATTG 1 cut(s) 6
MluCI AATT 1 cut(s) 6
MmeI TCCRAC 1 cut(s) 316
MnlI CCTC 7 cut(s) 46, 46, 54, 97, 177, 202, 275
MspI CCGG 2 cut(s) 202, 254
MspR9I CCNGG 1 cut(s) 203
MunI CAATTG 1 cut(s) 6
MvnI CGCG 2 cut(s) 23, 25
MwoI GCNNNNNNNGC 5 cut(s) 11, 20, 29, 41, 311
NciI CCSGG 1 cut(s) 203
NcoI CCATGG 1 cut(s) 287
NlaIII CATG 3 cut(s) 115, 183, 291
PceI AGGCCT 1 cut(s) 64
PflFI GACNNNGTC 1 cut(s) 332
PkrI GCNGC 3 cut(s) 22, 34, 152
PspPI GGNCC 1 cut(s) 284
PsyI GACNNNGTC 1 cut(s) 332
SatI GCNGC 3 cut(s) 21, 33, 151
Sau96I GGNCC 1 cut(s) 284
ScrFI CCNGG 1 cut(s) 203
SetI ASST 2 cut(s) 126, 307
SinI GGWCC 1 cut(s) 284
Sse9I AATT 1 cut(s) 6
SseBI AGGCCT 1 cut(s) 64
SsiI CCGC 2 cut(s) 21, 151
StuI AGGCCT 1 cut(s) 64
StyD4I CCNGG 1 cut(s) 201
StyI CCWWGG 2 cut(s) 84, 287
TaaI ACNGT 1 cut(s) 230
TasI AATT 1 cut(s) 6
TauI GCSGC 2 cut(s) 23, 153
TseI GCWGC 1 cut(s) 32
TspDTI ATGAA 1 cut(s) 100
Tth111I GACNNNGTC 1 cut(s) 332
VpaK11BI GGWCC 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.