Rh4DG128300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000308
Physical Location & Seq
Forward (+)
21138226 .. 21150995
12770 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG128300.1

Sequence Viewer

Length: 597 bp
ATGTCGGCGGGCTCTTTCCTTCCTCAGAAGACTCGACGTCAAGTCACCATTCGAGAAATTGAAGAAAACAATGAGCATGCATCTCCAATTATGGGGAAGAGGAGGAAAAGAAGAGGTGATGTTTCGGTGTCTCCGAAGAAGCCAAGGCTGGGTTTGGCAATTGGTAAGCACAATATTGATGCTTCCACTATGGGTTTAATTGCACCTGCTATGATTGTAGTTGATGTGAACAAGTCCAACACCAAATCATCTTGTGCAAGAATAACATGGAGCAAAGACGATGAGATTGTTATTTTGGGCGATCTGATCTCGTTTCAAGGAGACATGAGAGAATATAAAGTAAGGACTTTTATGCACTACATAAAGAATCGCCTCAACCGTGAAGATTTGAACCAAGTAAAGGAGAAACAGGGTATATTTGATGCTGCTGATGATGACAAATTAAGCAAGGGGAAGGAGCAAGAACAGGTGGAAACTGATGGCCAAACAATAGTGCAGTTGGTCGACAATGAGAAGATGAATGCTGATGATCAGAGCAAGTCGAAGATTAGTGGAATTCTTGAGTTTGGGTCTGGTTATGCATCCGTGTTAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

22.2

Weight (kDa)

8.89

Isoelectric Point (pI)

50.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 214
AatII GACGTC 1 cut(s) 40
Acc36I ACCTGC 1 cut(s) 214
AccI GTMKAC 1 cut(s) 504
AciI CCGC 1 cut(s) 8
AcoI YGGCCR 1 cut(s) 481
AcsI RAATTY 1 cut(s) 555
AcyI GRCGYC 1 cut(s) 37
AfiI CCNNNNNNNGG 3 cut(s) 92, 149, 400
AgsI TTSAA 3 cut(s) 62, 317, 391
AhdI GACNNNNNGTC 2 cut(s) 36, 41
Alw26I GTCTC 2 cut(s) 135, 315
AoxI GGCC 1 cut(s) 481
ApeKI GCWGC 1 cut(s) 425
ApoI RAATTY 1 cut(s) 555
AsuHPI GGTGA 2 cut(s) 37, 128
BalI TGGCCA 1 cut(s) 483
BanII GRGCYC 1 cut(s) 14
BbsI GAAGAC 1 cut(s) 35
BbvI GCAGC 1 cut(s) 412
BccI CCATC 1 cut(s) 473
BclI TGATCA 1 cut(s) 529
BcoDI GTCTC 2 cut(s) 135, 315
BfuAI ACCTGC 1 cut(s) 214
BisI GCNGC 1 cut(s) 426
BlsI GCNGC 1 cut(s) 427
BmeRI GACNNNNNGTC 2 cut(s) 36, 41
BmsI GCATC 4 cut(s) 89, 169, 412, 590
BpiI GAAGAC 1 cut(s) 35
BpuEI CTTGAG 1 cut(s) 581
BsaHI GRCGYC 1 cut(s) 37
BsaJI CCNNGG 1 cut(s) 143
Bsc4I CCNNNNNNNGG 3 cut(s) 92, 149, 400
BseDI CCNNGG 1 cut(s) 143
BseGI GGATG 1 cut(s) 581
BseLI CCNNNNNNNGG 3 cut(s) 92, 149, 400
BseMII CTCAG 1 cut(s) 38
BseRI GAGGAG 1 cut(s) 115
BseXI GCAGC 1 cut(s) 412
BseYI CCCAGC 1 cut(s) 148
BsgI GTGCAG 1 cut(s) 515
BshFI GGCC 1 cut(s) 483
BslI CCNNNNNNNGG 3 cut(s) 92, 149, 400
BsmAI GTCTC 2 cut(s) 135, 315
BsmI GAATGC 1 cut(s) 526
BsnI GGCC 1 cut(s) 483
Bsp1286I GDGCHC 1 cut(s) 14
Bsp143I GATC 3 cut(s) 301, 306, 529
BspACI CCGC 1 cut(s) 8
BspANI GGCC 1 cut(s) 483
BspCNI CTCAG 1 cut(s) 37
BspMI ACCTGC 1 cut(s) 214
BssECI CCNNGG 1 cut(s) 143
BssMI GATC 3 cut(s) 301, 306, 529
BssNI GRCGYC 1 cut(s) 37
BssT1I CCWWGG 1 cut(s) 143
Bst4CI ACNGT 1 cut(s) 380
Bst6I CTCTTC 2 cut(s) 92, 106
BstACI GRCGYC 1 cut(s) 37
BstC8I GCNNGC 2 cut(s) 10, 78
BstDEI CTNAG 1 cut(s) 24
BstF5I GGATG 1 cut(s) 581
BstKTI GATC 3 cut(s) 304, 309, 532
BstMAI GTCTC 2 cut(s) 135, 315
BstMBI GATC 3 cut(s) 301, 306, 529
BstNSI RCATGY 1 cut(s) 80
BstV1I GCAGC 1 cut(s) 412
BstV2I GAAGAC 1 cut(s) 35
BsuRI GGCC 1 cut(s) 483
BtsCI GGATG 1 cut(s) 581
BveI ACCTGC 1 cut(s) 214
Cac8I GCNNGC 2 cut(s) 10, 78
CviAII CATG 3 cut(s) 77, 267, 325
CviJI RGCY 4 cut(s) 12, 142, 148, 483
CviKI_1 RGCY 4 cut(s) 12, 142, 148, 483
DdeI CTNAG 1 cut(s) 24
DpnI GATC 3 cut(s) 303, 308, 531
DpnII GATC 3 cut(s) 301, 306, 529
DriI GACNNNNNGTC 2 cut(s) 36, 41
EaeI YGGCCR 1 cut(s) 481
Eam1104I CTCTTC 2 cut(s) 92, 106
Eam1105I GACNNNNNGTC 2 cut(s) 36, 41
EarI CTCTTC 2 cut(s) 92, 106
Eco130I CCWWGG 1 cut(s) 143
Eco24I GRGCYC 1 cut(s) 14
EcoRI GAATTC 1 cut(s) 555
EcoT14I CCWWGG 1 cut(s) 143
EcoT22I ATGCAT 2 cut(s) 82, 583
EcoT38I GRGCYC 1 cut(s) 14
ErhI CCWWGG 1 cut(s) 143
FaeI CATG 3 cut(s) 80, 270, 328
FatI CATG 3 cut(s) 76, 266, 324
FbaI TGATCA 1 cut(s) 529
FblI GTMKAC 1 cut(s) 504
Fnu4HI GCNGC 1 cut(s) 426
FokI GGATG 1 cut(s) 568
FriOI GRGCYC 1 cut(s) 14
Fsp4HI GCNGC 1 cut(s) 426
GluI GCNGC 1 cut(s) 426
GsaI CCCAGC 1 cut(s) 152
HaeIII GGCC 1 cut(s) 483
Hin1I GRCGYC 1 cut(s) 37
Hin1II CATG 3 cut(s) 80, 270, 328
HincII GTYRAC 1 cut(s) 505
HindII GTYRAC 1 cut(s) 505
HinfI GANTC 2 cut(s) 31, 367
HphI GGTGA 2 cut(s) 37, 128
Hpy166II GTNNAC 2 cut(s) 229, 505
Hpy188I TCNGA 4 cut(s) 27, 135, 306, 534
Hpy188III TCNNGA 2 cut(s) 53, 560
Hpy8I GTNNAC 2 cut(s) 229, 505
Hpy99I CGWCG 1 cut(s) 39
HpyAV CCTTC 2 cut(s) 29, 448
HpyCH4III ACNGT 1 cut(s) 380
HpyCH4IV ACGT 1 cut(s) 37
HpyCH4V TGCA 6 cut(s) 80, 203, 257, 355, 496, 581
HpyF3I CTNAG 1 cut(s) 24
HpySE526I ACGT 1 cut(s) 37
Hsp92I GRCGYC 1 cut(s) 37
Hsp92II CATG 3 cut(s) 80, 270, 328
Ksp22I TGATCA 1 cut(s) 529
Kzo9I GATC 3 cut(s) 301, 306, 529
LmnI GCTCC 2 cut(s) 270, 457
LpnPI CCDG 5 cut(s) 134, 219, 395, 452, 558
Lsp1109I GCAGC 1 cut(s) 412
LweI GCATC 4 cut(s) 89, 169, 412, 590
MaeII ACGT 1 cut(s) 37
MaeIII GTNAC 1 cut(s) 43
MalI GATC 3 cut(s) 303, 308, 531
MboI GATC 3 cut(s) 301, 306, 529
MboII GAAGA 8 cut(s) 40, 74, 109, 123, 148, 395, 526, 556
MfeI CAATTG 1 cut(s) 159
MhlI GDGCHC 1 cut(s) 14
MlsI TGGCCA 1 cut(s) 483
MluCI AATT 7 cut(s) 57, 87, 159, 198, 440, 555, 591
MluNI TGGCCA 1 cut(s) 483
MlyI GAGTC 1 cut(s) 25
MmeI TCCRAC 1 cut(s) 261
MnlI CCTC 5 cut(s) 33, 93, 96, 107, 383
Mox20I TGGCCA 1 cut(s) 483
Mph1103I ATGCAT 2 cut(s) 82, 583
MscI TGGCCA 1 cut(s) 483
MseI TTAA 3 cut(s) 197, 443, 590
Msp20I TGGCCA 1 cut(s) 483
MunI CAATTG 1 cut(s) 159
Mva1269I GAATGC 1 cut(s) 526
NdeII GATC 3 cut(s) 301, 306, 529
NlaIII CATG 3 cut(s) 80, 270, 328
NmuCI GTSAC 1 cut(s) 43
NsiI ATGCAT 2 cut(s) 82, 583
NspI RCATGY 1 cut(s) 80
PaeI GCATGC 1 cut(s) 80
PaqCI CACCTGC 1 cut(s) 214
PcsI WCGNNNNNNNCGW 2 cut(s) 131, 376
PctI GAATGC 1 cut(s) 526
PfeI GAWTC 1 cut(s) 367
PkrI GCNGC 1 cut(s) 427
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
PspFI CCCAGC 1 cut(s) 148
SalI GTCGAC 1 cut(s) 503
SaqAI TTAA 3 cut(s) 197, 443, 590
SatI GCNGC 1 cut(s) 426
Sau3AI GATC 3 cut(s) 301, 306, 529
SchI GAGTC 1 cut(s) 25
SduI GDGCHC 1 cut(s) 14
SetI ASST 4 cut(s) 40, 118, 208, 471
SfaNI GCATC 4 cut(s) 89, 169, 412, 590
SmlI CTYRAG 1 cut(s) 560
SmoI CTYRAG 1 cut(s) 560
SphI GCATGC 1 cut(s) 80
Sse9I AATT 7 cut(s) 57, 87, 159, 198, 440, 555, 591
SsiI CCGC 1 cut(s) 8
SspI AATATT 1 cut(s) 175
StyI CCWWGG 1 cut(s) 143
TaaI ACNGT 1 cut(s) 380
TaiI ACGT 1 cut(s) 40
TaqI TCGA 4 cut(s) 34, 52, 504, 542
TasI AATT 7 cut(s) 57, 87, 159, 198, 440, 555, 591
TfiI GAWTC 1 cut(s) 367
Tru1I TTAA 3 cut(s) 197, 443, 590
Tru9I TTAA 3 cut(s) 197, 443, 590
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 1 cut(s) 425
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 1 cut(s) 533
TspGWI ACGGA 1 cut(s) 574
XapI RAATTY 1 cut(s) 555
XceI RCATGY 1 cut(s) 80
XmiI GTMKAC 1 cut(s) 504
ZraI GACGTC 1 cut(s) 38
Zsp2I ATGCAT 2 cut(s) 82, 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.