Rmu_sc0013801.1_g000006

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013801.1
OG0000308
Physical Location & Seq
Reverse (-)
12212 .. 12700
489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013801.1_g000006.1.cds

Sequence Viewer

Length: 489 bp
atgggagtccctccggcatttagatccaaaaggatcatgcgtctaataggcagcacgatcggggaattcatggagttcgaccatacggctttccggactagggttttacgtttcagagtggagatcgcctatatgacgccattgttgctcaggcgtcgtttctgggttgaggacgaggtccagtttgtggttcaattcaaatatgacaagttgtttgggcgatgcagtcgttgtgggttcgttacccatgtgggattgccatgctccgggcctgagttgatggaggatgagcagggacaagtggggacagtggagccgccctcagccttggcggtgttgcgtggagggccagaaacaagtacgactacaaatagggttttggcgaatggccaaaccctagtattccaggcacaggttcccgggtccattcctgaagcttttctgcctcaaaatgtggtgcatatgctccaggctagaaggcaggtgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

162

Amino Acids

18.3

Weight (kDa)

9.34

Isoelectric Point (pI)

47.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 472
Acc36I ACCTGC 1 cut(s) 472
AccB7I CCANNNNNTGG 1 cut(s) 187
AccIII TCCGGA 1 cut(s) 93
AciI CCGC 2 cut(s) 317, 332
AclWI GGATC 2 cut(s) 18, 41
AcoI YGGCCR 1 cut(s) 388
AcsI RAATTY 1 cut(s) 65
AcuI CTGAAG 1 cut(s) 453
AcyI GRCGYC 2 cut(s) 137, 154
AfaI GTAC 1 cut(s) 361
AfiI CCNNNNNNNGG 4 cut(s) 100, 187, 266, 412
AgsI TTSAA 2 cut(s) 194, 199
AjnI CCWGG 2 cut(s) 405, 468
AluBI AGCT 1 cut(s) 437
AluI AGCT 1 cut(s) 437
AlwI GGATC 2 cut(s) 18, 41
Ama87I CYCGRG 1 cut(s) 419
Aor13HI TCCGGA 1 cut(s) 93
AoxI GGCC 3 cut(s) 269, 347, 388
ApeKI GCWGC 1 cut(s) 51
ApoI RAATTY 1 cut(s) 65
ArsI GACNNNNNNTTYG 2 cut(s) 197, 229
Asp700I GAANNNNTTC 1 cut(s) 438
AspS9I GGNCC 4 cut(s) 178, 269, 347, 423
AsuC2I CCSGG 3 cut(s) 268, 420, 421
AvaI CYCGRG 1 cut(s) 419
AvaII GGWCC 2 cut(s) 178, 423
BalI TGGCCA 1 cut(s) 390
BbvCI CCTCAGC 1 cut(s) 322
BbvI GCAGC 1 cut(s) 63
BccI CCATC 1 cut(s) 274
BceAI ACGGC 1 cut(s) 102
BcgI CGANNNNNNTGC 2 cut(s) 40, 74
BciT130I CCWGG 2 cut(s) 407, 470
BcnI CCSGG 3 cut(s) 268, 420, 421
BfaI CTAG 3 cut(s) 99, 398, 474
BfuAI ACCTGC 1 cut(s) 472
BisI GCNGC 2 cut(s) 52, 317
BlsI GCNGC 2 cut(s) 53, 318
Bme1390I CCNGG 5 cut(s) 268, 407, 420, 421, 470
Bme18I GGWCC 2 cut(s) 178, 423
BmeT110I CYCGRG 1 cut(s) 419
BmgT120I GGNCC 4 cut(s) 178, 269, 347, 423
BmiI GGNNCC 3 cut(s) 315, 417, 424
BmrFI CCNGG 5 cut(s) 268, 407, 420, 421, 470
BmsI GCATC 1 cut(s) 212
BplI GAGNNNNNCTC 2 cut(s) 305, 337
BpmI CTGGAG 1 cut(s) 452
Bpu10I CCTNAGC 2 cut(s) 149, 322
BpuMI CCSGG 3 cut(s) 268, 420, 421
BsaHI GRCGYC 2 cut(s) 137, 154
BsaJI CCNNGG 2 cut(s) 327, 419
BsaWI WCCGGW 1 cut(s) 93
Bsc4I CCNNNNNNNGG 4 cut(s) 100, 187, 266, 412
Bse1I ACTGG 1 cut(s) 181
BseAI TCCGGA 1 cut(s) 93
BseBI CCWGG 2 cut(s) 407, 470
BseDI CCNNGG 2 cut(s) 327, 419
BseGI GGATG 1 cut(s) 292
BseLI CCNNNNNNNGG 4 cut(s) 100, 187, 266, 412
BseMII CTCAG 3 cut(s) 163, 264, 336
BseNI ACTGG 1 cut(s) 181
BseXI GCAGC 1 cut(s) 63
Bsh1285I CGRYCG 1 cut(s) 60
BshFI GGCC 3 cut(s) 271, 349, 390
BsiEI CGRYCG 1 cut(s) 60
BsiHKCI CYCGRG 1 cut(s) 419
BsiSI CCGG 4 cut(s) 14, 94, 267, 420
BslFI GGGAC 2 cut(s) 309, 319
BslI CCNNNNNNNGG 4 cut(s) 100, 187, 266, 412
BsmFI GGGAC 2 cut(s) 309, 319
BsnI GGCC 3 cut(s) 271, 349, 390
BsoBI CYCGRG 1 cut(s) 419
Bsp13I TCCGGA 1 cut(s) 93
Bsp143I GATC 4 cut(s) 23, 33, 57, 123
BspACI CCGC 2 cut(s) 317, 332
BspANI GGCC 3 cut(s) 271, 349, 390
BspCNI CTCAG 3 cut(s) 162, 265, 335
BspEI TCCGGA 1 cut(s) 93
BspLI GGNNCC 3 cut(s) 315, 417, 424
BspMI ACCTGC 1 cut(s) 472
BspPI GGATC 2 cut(s) 18, 41
BsrI ACTGG 1 cut(s) 181
BssECI CCNNGG 2 cut(s) 327, 419
BssMI GATC 4 cut(s) 23, 33, 57, 123
BssNI GRCGYC 2 cut(s) 137, 154
BssT1I CCWWGG 1 cut(s) 327
Bst2UI CCWGG 2 cut(s) 407, 470
Bst4CI ACNGT 1 cut(s) 310
BstACI GRCGYC 2 cut(s) 137, 154
BstDEI CTNAG 3 cut(s) 149, 273, 322
BstF5I GGATG 1 cut(s) 292
BstKTI GATC 4 cut(s) 26, 36, 60, 126
BstMBI GATC 4 cut(s) 23, 33, 57, 123
BstMCI CGRYCG 1 cut(s) 60
BstMWI GCNNNNNNNGC 2 cut(s) 145, 346
BstNI CCWGG 2 cut(s) 407, 470
BstSCI CCNGG 5 cut(s) 266, 405, 418, 419, 468
BstV1I GCAGC 1 cut(s) 63
BstX2I RGATCY 1 cut(s) 23
BstYI RGATCY 1 cut(s) 23
BsuRI GGCC 3 cut(s) 271, 349, 390
BtgZI GCGATG 1 cut(s) 235
BtsCI GGATG 1 cut(s) 292
BtsIMutI CAGTG 1 cut(s) 315
BveI ACCTGC 1 cut(s) 472
Cfr13I GGNCC 4 cut(s) 178, 269, 347, 423
Cfr9I CCCGGG 1 cut(s) 419
CseI GACGC 3 cut(s) 29, 143, 145
Csp6I GTAC 1 cut(s) 360
CviAII CATG 4 cut(s) 37, 70, 248, 261
CviJI RGCY 8 cut(s) 89, 271, 316, 326, 349, 390, 437, 473
CviKI_1 RGCY 8 cut(s) 89, 271, 316, 326, 349, 390, 437, 473
CviQI GTAC 1 cut(s) 360
DdeI CTNAG 3 cut(s) 149, 273, 322
DpnI GATC 4 cut(s) 25, 35, 59, 125
DpnII GATC 4 cut(s) 23, 33, 57, 123
EaeI YGGCCR 1 cut(s) 388
Eco130I CCWWGG 1 cut(s) 327
Eco47I GGWCC 2 cut(s) 178, 423
Eco57I CTGAAG 1 cut(s) 453
Eco88I CYCGRG 1 cut(s) 419
EcoRI GAATTC 1 cut(s) 65
EcoRII CCWGG 2 cut(s) 405, 468
EcoT14I CCWWGG 1 cut(s) 327
ErhI CCWWGG 1 cut(s) 327
FaeI CATG 4 cut(s) 40, 73, 251, 264
FaqI GGGAC 2 cut(s) 309, 319
FatI CATG 4 cut(s) 36, 69, 247, 260
FauNDI CATATG 1 cut(s) 462
Fnu4HI GCNGC 2 cut(s) 52, 317
FokI GGATG 1 cut(s) 299
Fsp4HI GCNGC 2 cut(s) 52, 317
FspBI CTAG 3 cut(s) 99, 398, 474
GluI GCNGC 2 cut(s) 52, 317
GsuI CTGGAG 1 cut(s) 452
HaeIII GGCC 3 cut(s) 271, 349, 390
HapII CCGG 4 cut(s) 14, 94, 267, 420
HgaI GACGC 3 cut(s) 29, 143, 145
Hin1I GRCGYC 2 cut(s) 137, 154
Hin1II CATG 4 cut(s) 40, 73, 251, 264
HindIII AAGCTT 1 cut(s) 435
HinfI GANTC 1 cut(s) 6
HpaII CCGG 4 cut(s) 14, 94, 267, 420
Hpy188I TCNGA 1 cut(s) 116
Hpy188III TCNNGA 2 cut(s) 94, 431
Hpy99I CGWCG 1 cut(s) 159
HpyAV CCTTC 1 cut(s) 471
HpyCH4III ACNGT 1 cut(s) 310
HpyCH4IV ACGT 1 cut(s) 109
HpyCH4V TGCA 2 cut(s) 225, 460
HpyF10VI GCNNNNNNNGC 2 cut(s) 145, 346
HpyF3I CTNAG 3 cut(s) 149, 273, 322
HpySE526I ACGT 1 cut(s) 109
Hsp92I GRCGYC 2 cut(s) 137, 154
Hsp92II CATG 4 cut(s) 40, 73, 251, 264
Kpn2I TCCGGA 1 cut(s) 93
Kzo9I GATC 4 cut(s) 23, 33, 57, 123
LmnI GCTCC 3 cut(s) 269, 313, 471
Lsp1109I GCAGC 1 cut(s) 63
LweI GCATC 1 cut(s) 212
MaeI CTAG 3 cut(s) 99, 398, 474
MaeII ACGT 1 cut(s) 109
MaeIII GTNAC 1 cut(s) 241
MalI GATC 4 cut(s) 25, 35, 59, 125
MboI GATC 4 cut(s) 23, 33, 57, 123
MflI RGATCY 1 cut(s) 23
MlsI TGGCCA 1 cut(s) 390
MluCI AATT 2 cut(s) 65, 194
MluNI TGGCCA 1 cut(s) 390
MlyI GAGTC 1 cut(s) 15
MnlI CCTC 7 cut(s) 21, 163, 169, 277, 331, 338, 456
Mox20I TGGCCA 1 cut(s) 390
MroI TCCGGA 1 cut(s) 93
MroXI GAANNNNTTC 1 cut(s) 438
MscI TGGCCA 1 cut(s) 390
Msp20I TGGCCA 1 cut(s) 390
MspI CCGG 4 cut(s) 14, 94, 267, 420
MspR9I CCNGG 5 cut(s) 268, 407, 420, 421, 470
MvaI CCWGG 2 cut(s) 407, 470
MwoI GCNNNNNNNGC 2 cut(s) 145, 346
NciI CCSGG 3 cut(s) 268, 420, 421
NdeI CATATG 1 cut(s) 462
NdeII GATC 4 cut(s) 23, 33, 57, 123
NlaIII CATG 4 cut(s) 40, 73, 251, 264
NlaIV GGNNCC 3 cut(s) 315, 417, 424
PaqCI CACCTGC 1 cut(s) 472
PdmI GAANNNNTTC 1 cut(s) 438
PflFI GACNNNGTC 1 cut(s) 176
PflMI CCANNNNNTGG 1 cut(s) 187
PkrI GCNGC 2 cut(s) 53, 318
Ple19I CGATCG 1 cut(s) 60
PleI GAGTC 1 cut(s) 14
PpsI GAGTC 1 cut(s) 14
Psp6I CCWGG 2 cut(s) 405, 468
PspGI CCWGG 2 cut(s) 405, 468
PspN4I GGNNCC 3 cut(s) 315, 417, 424
PspPI GGNCC 4 cut(s) 178, 269, 347, 423
PsuI RGATCY 1 cut(s) 23
PsyI GACNNNGTC 1 cut(s) 176
PvuI CGATCG 1 cut(s) 60
RsaI GTAC 1 cut(s) 361
RsaNI GTAC 1 cut(s) 360
SatI GCNGC 2 cut(s) 52, 317
Sau3AI GATC 4 cut(s) 23, 33, 57, 123
Sau96I GGNCC 4 cut(s) 178, 269, 347, 423
SchI GAGTC 1 cut(s) 15
ScrFI CCNGG 5 cut(s) 268, 407, 420, 421, 470
SetI ASST 5 cut(s) 112, 180, 417, 439, 486
SfaNI GCATC 1 cut(s) 212
SinI GGWCC 2 cut(s) 178, 423
SmaI CCCGGG 1 cut(s) 421
Sse9I AATT 2 cut(s) 65, 194
SsiI CCGC 2 cut(s) 317, 332
SspMI CTAG 3 cut(s) 99, 398, 474
StyD4I CCNGG 5 cut(s) 266, 405, 418, 419, 468
StyI CCWWGG 1 cut(s) 327
TaaI ACNGT 1 cut(s) 310
TaiI ACGT 1 cut(s) 112
TaqI TCGA 1 cut(s) 78
TasI AATT 2 cut(s) 65, 194
TauI GCSGC 1 cut(s) 319
TscAI CASTG 1 cut(s) 315
TseI GCWGC 1 cut(s) 51
TspDTI ATGAA 1 cut(s) 58
TspMI CCCGGG 1 cut(s) 419
TspRI CASTG 1 cut(s) 315
Tth111I GACNNNGTC 1 cut(s) 176
Van91I CCANNNNNTGG 1 cut(s) 187
VpaK11BI GGWCC 2 cut(s) 178, 423
XapI RAATTY 1 cut(s) 65
XmaI CCCGGG 1 cut(s) 419
XmnI GAANNNNTTC 1 cut(s) 438
XspI CTAG 3 cut(s) 99, 398, 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.