Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0043076.1

Orthogroup ID

OG0000308

Physical Location & Seq

Genomic Coordinates Forward (+)

1783 .. 2109

Gene Structure 327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0043076.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

atggaaaaaaaaccagtggatctgcgcccatccaaggggttgagacaacccaaagctttcatgattggtaagctacttacggcgagggaatactctcgcagatcgttcctgggaatgttccaggctgcatggaggattaatggtagcctccgagtagaggaggtcggagaagatgatagagttttgttcaccttcacatacccaaatgatgttggtcgtgtttggaaaggtggaccatggggctataacagagctccgatagcccttgcttcatatgacggtgtcagcccggcggtagatgtacccctcaagaagtcatcgtactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

108

Amino Acids

12.21

Weight (kDa)

9.92

Isoelectric Point (pI)

43.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000308)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24891 FvH4_4g09031
rosa_multiflora	Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii	Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa	Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha	Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	293
AclWI	GGATC	1 cut(s)	27
AfaI	GTAC	2 cut(s)	303, 323
AfiI	CCNNNNNNNGG	3 cut(s)	34, 35, 157
AjnI	CCWGG	2 cut(s)	108, 120
AluBI	AGCT	3 cut(s)	56, 73, 254
AluI	AGCT	3 cut(s)	56, 73, 254
Alw21I	GWGCWC	1 cut(s)	256
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	1 cut(s)	27
ApeKI	GCWGC	1 cut(s)	125
AseI	ATTAAT	1 cut(s)	138
AspLEI	GCGC	1 cut(s)	27
AspS9I	GGNCC	1 cut(s)	233
AsuC2I	CCSGG	1 cut(s)	290
AsuHPI	GGTGA	1 cut(s)	181
AvaII	GGWCC	1 cut(s)	233
BanII	GRGCYC	1 cut(s)	256
BarI	GAAGNNNNNNTAC	1 cut(s)	305
Bbv12I	GWGCWC	1 cut(s)	256
BbvI	GCAGC	1 cut(s)	112
BccI	CCATC	1 cut(s)	37
BceAI	ACGGC	1 cut(s)	96
BciT130I	CCWGG	2 cut(s)	110, 122
BcnI	CCSGG	1 cut(s)	290
BcoDI	GTCTC	1 cut(s)	37
BfaI	CTAG	1 cut(s)	325
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
Bme1390I	CCNGG	3 cut(s)	110, 122, 290
Bme18I	GGWCC	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	233
BmrFI	CCNGG	3 cut(s)	110, 122, 290
BpuEI	CTTGAG	1 cut(s)	293
BpuMI	CCSGG	1 cut(s)	290
BsaJI	CCNNGG	3 cut(s)	33, 109, 236
Bsc4I	CCNNNNNNNGG	3 cut(s)	34, 35, 157
Bse1I	ACTGG	1 cut(s)	14
BseBI	CCWGG	2 cut(s)	110, 122
BseDI	CCNNGG	3 cut(s)	33, 109, 236
BseGI	GGATG	1 cut(s)	29
BseLI	CCNNNNNNNGG	3 cut(s)	34, 35, 157
BseNI	ACTGG	1 cut(s)	14
BseRI	GAGGAG	1 cut(s)	173
BseXI	GCAGC	1 cut(s)	112
BsiHKAI	GWGCWC	1 cut(s)	256
BsiSI	CCGG	1 cut(s)	290
BslI	CCNNNNNNNGG	3 cut(s)	34, 35, 157
BsmAI	GTCTC	1 cut(s)	37
Bsp1286I	GDGCHC	1 cut(s)	256
Bsp143I	GATC	2 cut(s)	19, 101
Bsp19I	CCATGG	1 cut(s)	236
BspACI	CCGC	1 cut(s)	293
BspHI	TCATGA	1 cut(s)	60
BspPI	GGATC	1 cut(s)	27
BsrI	ACTGG	1 cut(s)	14
BssECI	CCNNGG	3 cut(s)	33, 109, 236
BssMI	GATC	2 cut(s)	19, 101
BssT1I	CCWWGG	2 cut(s)	33, 236
Bst2UI	CCWGG	2 cut(s)	110, 122
Bst4CI	ACNGT	1 cut(s)	281
BstDSI	CCRYGG	1 cut(s)	236
BstF5I	GGATG	1 cut(s)	29
BstHHI	GCGC	1 cut(s)	27
BstKTI	GATC	2 cut(s)	22, 104
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	2 cut(s)	19, 101
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstNI	CCWGG	2 cut(s)	110, 122
BstSCI	CCNGG	3 cut(s)	108, 120, 288
BstV1I	GCAGC	1 cut(s)	112
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
BtgI	CCRYGG	1 cut(s)	236
BtsCI	GGATG	1 cut(s)	29
BtsIMutI	CAGTG	1 cut(s)	21
CciI	TCATGA	1 cut(s)	60
CfoI	GCGC	1 cut(s)	27
Cfr13I	GGNCC	1 cut(s)	233
Csp6I	GTAC	2 cut(s)	302, 322
CviAII	CATG	3 cut(s)	61, 129, 237
CviJI	RGCY	8 cut(s)	56, 73, 125, 147, 243, 254, 263, 288
CviKI_1	RGCY	8 cut(s)	56, 73, 125, 147, 243, 254, 263, 288
CviQI	GTAC	2 cut(s)	302, 322
DpnI	GATC	2 cut(s)	21, 103
DpnII	GATC	2 cut(s)	19, 101
Ecl136II	GAGCTC	1 cut(s)	254
Eco130I	CCWWGG	2 cut(s)	33, 236
Eco24I	GRGCYC	1 cut(s)	256
Eco47I	GGWCC	1 cut(s)	233
Eco53kI	GAGCTC	1 cut(s)	254
EcoICRI	GAGCTC	1 cut(s)	254
EcoRII	CCWGG	2 cut(s)	108, 120
EcoT14I	CCWWGG	2 cut(s)	33, 236
EcoT38I	GRGCYC	1 cut(s)	256
ErhI	CCWWGG	2 cut(s)	33, 236
FaeI	CATG	3 cut(s)	64, 132, 240
FaiI	YATR	7 cut(s)	62, 130, 199, 238, 246, 274, 276
FatI	CATG	3 cut(s)	60, 128, 236
FauNDI	CATATG	1 cut(s)	274
Fnu4HI	GCNGC	1 cut(s)	126
FokI	GGATG	1 cut(s)	16
FriOI	GRGCYC	1 cut(s)	256
Fsp4HI	GCNGC	1 cut(s)	126
FspBI	CTAG	1 cut(s)	325
GlaI	GCGC	1 cut(s)	26
GluI	GCNGC	1 cut(s)	126
HapII	CCGG	1 cut(s)	290
HhaI	GCGC	1 cut(s)	27
Hin1II	CATG	3 cut(s)	64, 132, 240
Hin6I	GCGC	1 cut(s)	25
HinP1I	GCGC	1 cut(s)	25
HindIII	AAGCTT	1 cut(s)	54
HpaII	CCGG	1 cut(s)	290
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	2 cut(s)	189, 233
Hpy188I	TCNGA	3 cut(s)	152, 167, 258
Hpy188III	TCNNGA	2 cut(s)	61, 310
Hpy8I	GTNNAC	2 cut(s)	189, 233
HpyAV	CCTTC	1 cut(s)	202
HpyCH4III	ACNGT	1 cut(s)	281
HpyCH4V	TGCA	1 cut(s)	128
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
Hsp92II	CATG	3 cut(s)	64, 132, 240
HspAI	GCGC	1 cut(s)	25
Kzo9I	GATC	2 cut(s)	19, 101
LmnI	GCTCC	1 cut(s)	259
LpnPI	CCDG	6 cut(s)	27, 95, 107, 122, 134, 303
Lsp1109I	GCAGC	1 cut(s)	112
MaeI	CTAG	1 cut(s)	325
MalI	GATC	2 cut(s)	21, 103
MboI	GATC	2 cut(s)	19, 101
MboII	GAAGA	1 cut(s)	182
MflI	RGATCY	1 cut(s)	19
MhlI	GDGCHC	1 cut(s)	256
MmeI	TCCRAC	1 cut(s)	145
MnlI	CCTC	6 cut(s)	78, 126, 151, 154, 158, 317
MseI	TTAA	1 cut(s)	138
MspI	CCGG	1 cut(s)	290
MspR9I	CCNGG	3 cut(s)	110, 122, 290
MvaI	CCWGG	2 cut(s)	110, 122
MwoI	GCNNNNNNNGC	1 cut(s)	260
NciI	CCSGG	1 cut(s)	290
NcoI	CCATGG	1 cut(s)	236
NdeI	CATATG	1 cut(s)	274
NdeII	GATC	2 cut(s)	19, 101
NlaIII	CATG	3 cut(s)	64, 132, 240
PagI	TCATGA	1 cut(s)	60
PflFI	GACNNNGTC	1 cut(s)	281
PkrI	GCNGC	1 cut(s)	127
PshBI	ATTAAT	1 cut(s)	138
Psp124BI	GAGCTC	1 cut(s)	256
Psp6I	CCWGG	2 cut(s)	108, 120
PspGI	CCWGG	2 cut(s)	108, 120
PspPI	GGNCC	1 cut(s)	233
PsuI	RGATCY	1 cut(s)	19
PsyI	GACNNNGTC	1 cut(s)	281
RsaI	GTAC	2 cut(s)	303, 323
RsaNI	GTAC	2 cut(s)	302, 322
SacI	GAGCTC	1 cut(s)	256
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	1 cut(s)	126
Sau3AI	GATC	2 cut(s)	19, 101
Sau96I	GGNCC	1 cut(s)	233
ScrFI	CCNGG	3 cut(s)	110, 122, 290
SduI	GDGCHC	1 cut(s)	256
SetI	ASST	6 cut(s)	58, 75, 165, 194, 232, 256
SinI	GGWCC	1 cut(s)	233
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
SsiI	CCGC	1 cut(s)	293
SspMI	CTAG	1 cut(s)	325
SstI	GAGCTC	1 cut(s)	256
StyD4I	CCNGG	3 cut(s)	108, 120, 288
StyI	CCWWGG	2 cut(s)	33, 236
TaaI	ACNGT	1 cut(s)	281
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TscAI	CASTG	1 cut(s)	21
TseI	GCWGC	1 cut(s)	125
TspDTI	ATGAA	2 cut(s)	49, 261
TspRI	CASTG	1 cut(s)	21
Tth111I	GACNNNGTC	1 cut(s)	281
VpaK11BI	GGWCC	1 cut(s)	233
VspI	ATTAAT	1 cut(s)	138
XspI	CTAG	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.