Rmu_co8074240.1_g000001

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8074240.1
OG0000308
Physical Location & Seq
Reverse (-)
2 .. 544
543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8074240.1_g000001.1.cds

Sequence Viewer

Length: 543 bp
atggtgggaaagctactcacagtaagagactatactcgccgctcattcatggggatgtttcgatctgcatggagggtgaatggcaccctttgggttgagaaaatcggagaagatgatcgggttcttttctcttttttggatccggctgacaaagttagggtttggaaaggaggaccatggggtttcaacaaagctctgattgcactcgcagactatgacagcgtcggacagatctcggcggtgccattgagggcatcatcctactggatgacgttattgggtgttcctcctgcttttcgatctgaaaggattatgcgactgattggcagtaccttggatgatttcaaagagtatgatagaactgctttccggcaaatggtactgtgcataccagttgagatcgagtatgctaaaccattgttgttcaaacagaggttctgggttgaagatgatgttcagtttttggtaaagttcaaacatgataaggtctttgggcgttgtgggctatgtggttttgttacccacgttggcctcccgtgctct
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

181

Amino Acids

20.86

Weight (kDa)

9.25

Isoelectric Point (pI)

31.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 83, 241
AccBSI CCGCTC 1 cut(s) 42
AciI CCGC 2 cut(s) 40, 239
AclWI GGATC 2 cut(s) 134, 147
AfaI GTAC 2 cut(s) 331, 381
AfiI CCNNNNNNNGG 1 cut(s) 376
AgsI TTSAA 5 cut(s) 187, 346, 427, 446, 475
AluBI AGCT 2 cut(s) 13, 194
AluI AGCT 2 cut(s) 13, 194
Alw21I GWGCWC 1 cut(s) 542
Alw26I GTCTC 1 cut(s) 21
AlwI GGATC 2 cut(s) 134, 147
AoxI GGCC 1 cut(s) 529
AspS9I GGNCC 1 cut(s) 173
AsuHPI GGTGA 1 cut(s) 88
AvaII GGWCC 1 cut(s) 173
BamHI GGATCC 1 cut(s) 139
BanI GGYRCC 2 cut(s) 83, 241
Bbv12I GWGCWC 1 cut(s) 542
BcoDI GTCTC 1 cut(s) 21
BglII AGATCT 1 cut(s) 231
BisI GCNGC 1 cut(s) 40
BlsI GCNGC 1 cut(s) 41
Bme18I GGWCC 1 cut(s) 173
BmgT120I GGNCC 1 cut(s) 173
BmiI GGNNCC 3 cut(s) 85, 141, 243
BmsI GCATC 1 cut(s) 263
BsaJI CCNNGG 2 cut(s) 176, 333
Bsc4I CCNNNNNNNGG 1 cut(s) 376
Bse1I ACTGG 2 cut(s) 269, 392
BseDI CCNNGG 2 cut(s) 176, 333
BseGI GGATG 4 cut(s) 60, 257, 273, 343
BseLI CCNNNNNNNGG 1 cut(s) 376
BseNI ACTGG 2 cut(s) 269, 392
BshFI GGCC 1 cut(s) 531
BshNI GGYRCC 2 cut(s) 83, 241
BsiHKAI GWGCWC 1 cut(s) 542
BsiSI CCGG 2 cut(s) 143, 370
BslI CCNNNNNNNGG 1 cut(s) 376
BsmAI GTCTC 1 cut(s) 21
BsnI GGCC 1 cut(s) 531
Bsp1286I GDGCHC 1 cut(s) 542
Bsp143I GATC 6 cut(s) 62, 115, 139, 231, 299, 399
Bsp19I CCATGG 1 cut(s) 176
BspACI CCGC 2 cut(s) 40, 239
BspANI GGCC 1 cut(s) 531
BspLI GGNNCC 3 cut(s) 85, 141, 243
BspPI GGATC 2 cut(s) 134, 147
BspT107I GGYRCC 2 cut(s) 83, 241
BsrBI CCGCTC 1 cut(s) 42
BsrI ACTGG 2 cut(s) 269, 392
BssECI CCNNGG 2 cut(s) 176, 333
BssMI GATC 6 cut(s) 62, 115, 139, 231, 299, 399
BssT1I CCWWGG 2 cut(s) 176, 333
Bst4CI ACNGT 2 cut(s) 22, 384
BstDSI CCRYGG 1 cut(s) 176
BstF5I GGATG 4 cut(s) 60, 257, 273, 343
BstKTI GATC 6 cut(s) 65, 118, 142, 234, 302, 402
BstMAI GTCTC 1 cut(s) 21
BstMBI GATC 6 cut(s) 62, 115, 139, 231, 299, 399
BstMWI GCNNNNNNNGC 3 cut(s) 200, 502, 537
BstX2I RGATCY 2 cut(s) 139, 231
BstYI RGATCY 2 cut(s) 139, 231
BsuRI GGCC 1 cut(s) 531
BtgI CCRYGG 1 cut(s) 176
BtsCI GGATG 4 cut(s) 60, 257, 273, 343
Cfr13I GGNCC 1 cut(s) 173
CseI GACGC 1 cut(s) 211
Csp6I GTAC 2 cut(s) 330, 380
CviAII CATG 4 cut(s) 49, 69, 177, 479
CviJI RGCY 5 cut(s) 13, 146, 194, 505, 531
CviKI_1 RGCY 5 cut(s) 13, 146, 194, 505, 531
CviQI GTAC 2 cut(s) 330, 380
DpnI GATC 6 cut(s) 64, 117, 141, 233, 301, 401
DpnII GATC 6 cut(s) 62, 115, 139, 231, 299, 399
Eco130I CCWWGG 2 cut(s) 176, 333
Eco47I GGWCC 1 cut(s) 173
EcoT14I CCWWGG 2 cut(s) 176, 333
ErhI CCWWGG 2 cut(s) 176, 333
FaeI CATG 4 cut(s) 52, 72, 180, 482
FatI CATG 4 cut(s) 48, 68, 176, 478
Fnu4HI GCNGC 1 cut(s) 40
FokI GGATG 4 cut(s) 67, 244, 280, 350
Fsp4HI GCNGC 1 cut(s) 40
GluI GCNGC 1 cut(s) 40
HaeIII GGCC 1 cut(s) 531
HapII CCGG 2 cut(s) 143, 370
HgaI GACGC 1 cut(s) 211
Hin1II CATG 4 cut(s) 52, 72, 180, 482
HpaII CCGG 2 cut(s) 143, 370
HphI GGTGA 1 cut(s) 88
Hpy188I TCNGA 4 cut(s) 107, 198, 227, 304
Hpy99I CGWCG 1 cut(s) 227
HpyCH4III ACNGT 2 cut(s) 22, 384
HpyCH4IV ACGT 2 cut(s) 272, 525
HpyCH4V TGCA 3 cut(s) 68, 203, 387
HpyF10VI GCNNNNNNNGC 3 cut(s) 200, 502, 537
HpySE526I ACGT 2 cut(s) 272, 525
Hsp92II CATG 4 cut(s) 52, 72, 180, 482
Kzo9I GATC 6 cut(s) 62, 115, 139, 231, 299, 399
LpnPI CCDG 6 cut(s) 156, 250, 303, 383, 405, 424
LweI GCATC 1 cut(s) 263
MaeII ACGT 2 cut(s) 272, 525
MaeIII GTNAC 1 cut(s) 517
MalI GATC 6 cut(s) 64, 117, 141, 233, 301, 401
MbiI CCGCTC 1 cut(s) 42
MboI GATC 6 cut(s) 62, 115, 139, 231, 299, 399
MboII GAAGA 2 cut(s) 122, 458
MflI RGATCY 2 cut(s) 139, 231
MhlI GDGCHC 1 cut(s) 542
MmeI TCCRAC 1 cut(s) 205
MnlI CCTC 6 cut(s) 66, 164, 243, 297, 426, 542
MslI CAYNNNNRTG 1 cut(s) 53
MspI CCGG 2 cut(s) 143, 370
MwoI GCNNNNNNNGC 3 cut(s) 200, 502, 537
NcoI CCATGG 1 cut(s) 176
NdeII GATC 6 cut(s) 62, 115, 139, 231, 299, 399
NlaIII CATG 4 cut(s) 52, 72, 180, 482
NlaIV GGNNCC 3 cut(s) 85, 141, 243
NmeAIII GCCGAG 1 cut(s) 215
PflFI GACNNNGTC 1 cut(s) 221
PkrI GCNGC 1 cut(s) 41
PspN4I GGNNCC 3 cut(s) 85, 141, 243
PspPI GGNCC 1 cut(s) 173
PsuI RGATCY 2 cut(s) 139, 231
PsyI GACNNNGTC 1 cut(s) 221
RsaI GTAC 2 cut(s) 331, 381
RsaNI GTAC 2 cut(s) 330, 380
RseI CAYNNNNRTG 1 cut(s) 53
SatI GCNGC 1 cut(s) 40
Sau3AI GATC 6 cut(s) 62, 115, 139, 231, 299, 399
Sau96I GGNCC 1 cut(s) 173
SduI GDGCHC 1 cut(s) 542
SetI ASST 7 cut(s) 15, 196, 275, 335, 437, 489, 528
SfaNI GCATC 1 cut(s) 263
SinI GGWCC 1 cut(s) 173
SmiMI CAYNNNNRTG 1 cut(s) 53
SsiI CCGC 2 cut(s) 40, 239
StyI CCWWGG 2 cut(s) 176, 333
TaaI ACNGT 2 cut(s) 22, 384
TaiI ACGT 2 cut(s) 275, 528
TaqI TCGA 3 cut(s) 61, 298, 402
TauI GCSGC 1 cut(s) 42
TspDTI ATGAA 1 cut(s) 37
Tth111I GACNNNGTC 1 cut(s) 221
VpaK11BI GGWCC 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.