Rmu_sc0021375.1_g000001

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021375.1
OG0000308
Physical Location & Seq
Reverse (-)
2 .. 735
734 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021375.1_g000001.1.cds

Sequence Viewer

Length: 734 bp
atggaggacattgacactatggcaacccgactggcgtcatctttggcactggcagaggagaaaagagcagtggatctgaggccatccaagggcaagggtctacgccaaccggaggtgtatgtggttggcaagttactcacggcaagggagtataggaaacgttcttttttagggatgtttcaatctgcatggcatgttggtggagatcttcgggtggagccggcagcagaggaccgagttcttttctcattctcagatcgggtggactgcgctcgtgtgtggtgtagctgtccgtggagtttcaaccgagcccctgtagcactagcagaatatgatgggatcgaactagtcgaacaagtgctattgcaacgttcttcctattgggttacgctgttggatgtgccgccggcgttccgatctgaaagagtgatgcgcatgattggcagcaccattggtgatctgaaggagtgggacagaccggctttccgacgaggtgtactgcggatcagggtggagatcgagttttcacagcccatacttactcaacgtctctttcagttggaggatcgagtggaggtgctggtgaggttccgtttcgacaaaatatttggcaggtgcaacagctatgggtttgtaacccatgtggggttaccgtgctctggaccggtattgaaagatggggttggacatgacaggcctcatccggtggagcagcgtagctgtgctgctgcaac
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

245

Amino Acids

27.92

Weight (kDa)

8.78

Isoelectric Point (pI)

50.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 603
Acc16I TGCGCA 1 cut(s) 434
Acc36I ACCTGC 1 cut(s) 603
AccI GTMKAC 1 cut(s) 100
AciI CCGC 2 cut(s) 404, 502
AclI AACGTT 2 cut(s) 160, 370
AclWI GGATC 4 cut(s) 81, 347, 512, 573
AcuI CTGAAG 1 cut(s) 482
AcyI GRCGYC 1 cut(s) 35
AfaI GTAC 1 cut(s) 498
AfiI CCNNNNNNNGG 4 cut(s) 89, 112, 645, 659
AgeI ACCGGT 1 cut(s) 664
AgsI TTSAA 3 cut(s) 182, 304, 673
AhlI ACTAGT 1 cut(s) 346
AluBI AGCT 3 cut(s) 288, 624, 720
AluI AGCT 3 cut(s) 288, 624, 720
Alw21I GWGCWC 1 cut(s) 659
Alw26I GTCTC 1 cut(s) 554
AlwI GGATC 4 cut(s) 81, 347, 512, 573
AoxI GGCC 2 cut(s) 80, 695
ApeKI GCWGC 5 cut(s) 224, 444, 712, 725, 728
ArsI GACNNNNNNTTYG 2 cut(s) 590, 622
AsiGI ACCGGT 1 cut(s) 664
AspLEI GCGC 2 cut(s) 272, 435
AspS9I GGNCC 2 cut(s) 232, 662
AsuHPI GGTGA 2 cut(s) 467, 595
AvaII GGWCC 2 cut(s) 232, 662
BanII GRGCYC 1 cut(s) 313
BauI CACGAG 1 cut(s) 273
Bbv12I GWGCWC 1 cut(s) 659
BbvI GCAGC 5 cut(s) 236, 456, 712, 715, 724
BccI CCATC 3 cut(s) 91, 329, 671
BceAI ACGGC 1 cut(s) 156
BcoDI GTCTC 1 cut(s) 554
BcuI ACTAGT 1 cut(s) 346
BfaI CTAG 2 cut(s) 323, 347
BfmI CTRYAG 1 cut(s) 315
BfuAI ACCTGC 1 cut(s) 603
BglII AGATCT 1 cut(s) 205
BisI GCNGC 6 cut(s) 225, 404, 445, 713, 726, 729
BlsI GCNGC 6 cut(s) 226, 405, 446, 714, 727, 730
Bme18I GGWCC 2 cut(s) 232, 662
BmgT120I GGNCC 2 cut(s) 232, 662
BmiI GGNNCC 2 cut(s) 219, 590
BmsI GCATC 1 cut(s) 420
BoxI GACNNNNGTC 1 cut(s) 34
BsaHI GRCGYC 1 cut(s) 35
BsaJI CCNNGG 2 cut(s) 87, 293
BsaWI WCCGGW 3 cut(s) 109, 664, 703
BsaXI ACNNNNNCTCC 2 cut(s) 506, 536
Bsc4I CCNNNNNNNGG 4 cut(s) 89, 112, 645, 659
Bse118I RCCGGY 4 cut(s) 220, 406, 478, 664
Bse1I ACTGG 2 cut(s) 36, 54
BseDI CCNNGG 2 cut(s) 87, 293
BseGI GGATG 4 cut(s) 83, 180, 403, 700
BseLI CCNNNNNNNGG 4 cut(s) 89, 112, 645, 659
BseMII CTCAG 2 cut(s) 68, 267
BseNI ACTGG 2 cut(s) 36, 54
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 5 cut(s) 236, 456, 712, 715, 724
BshFI GGCC 2 cut(s) 82, 697
BshTI ACCGGT 1 cut(s) 664
BsiHKAI GWGCWC 1 cut(s) 659
BsiSI CCGG 6 cut(s) 110, 221, 407, 479, 665, 704
BslFI GGGAC 1 cut(s) 485
BslI CCNNNNNNNGG 4 cut(s) 89, 112, 645, 659
BsmAI GTCTC 1 cut(s) 554
BsmBI CGTCTC 1 cut(s) 554
BsmFI GGGAC 1 cut(s) 485
BsnI GGCC 2 cut(s) 82, 697
Bsp1286I GDGCHC 2 cut(s) 313, 659
Bsp143I GATC 9 cut(s) 73, 205, 256, 339, 416, 457, 504, 516, 565
BspACI CCGC 2 cut(s) 404, 502
BspANI GGCC 2 cut(s) 82, 697
BspCNI CTCAG 2 cut(s) 69, 266
BspLI GGNNCC 2 cut(s) 219, 590
BspMI ACCTGC 1 cut(s) 603
BspPI GGATC 4 cut(s) 81, 347, 512, 573
BsrFI RCCGGY 4 cut(s) 220, 406, 478, 664
BsrI ACTGG 2 cut(s) 36, 54
BssAI RCCGGY 4 cut(s) 220, 406, 478, 664
BssECI CCNNGG 2 cut(s) 87, 293
BssMI GATC 9 cut(s) 73, 205, 256, 339, 416, 457, 504, 516, 565
BssNI GRCGYC 1 cut(s) 35
BssSI CACGAG 1 cut(s) 273
BssT1I CCWWGG 1 cut(s) 87
Bst2BI CACGAG 1 cut(s) 273
Bst4CI ACNGT 1 cut(s) 654
BstACI GRCGYC 1 cut(s) 35
BstC8I GCNNGC 2 cut(s) 222, 408
BstDEI CTNAG 2 cut(s) 77, 253
BstDSI CCRYGG 1 cut(s) 293
BstEII GGTNACC 1 cut(s) 648
BstF5I GGATG 4 cut(s) 83, 180, 403, 700
BstHHI GCGC 2 cut(s) 272, 435
BstKTI GATC 9 cut(s) 76, 208, 259, 342, 419, 460, 507, 519, 568
BstMAI GTCTC 1 cut(s) 554
BstMBI GATC 9 cut(s) 73, 205, 256, 339, 416, 457, 504, 516, 565
BstMWI GCNNNNNNNGC 2 cut(s) 317, 441
BstNSI RCATGY 1 cut(s) 197
BstPAI GACNNNNGTC 1 cut(s) 34
BstPI GGTNACC 1 cut(s) 648
BstSFI CTRYAG 1 cut(s) 315
BstV1I GCAGC 5 cut(s) 236, 456, 712, 715, 724
BstX2I RGATCY 2 cut(s) 73, 205
BstYI RGATCY 2 cut(s) 73, 205
BsuRI GGCC 2 cut(s) 82, 697
BtgI CCRYGG 1 cut(s) 293
BtsCI GGATG 4 cut(s) 83, 180, 403, 700
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 2 cut(s) 47, 75
BveI ACCTGC 1 cut(s) 603
Cac8I GCNNGC 2 cut(s) 222, 408
CfoI GCGC 2 cut(s) 272, 435
Cfr10I RCCGGY 4 cut(s) 220, 406, 478, 664
Cfr13I GGNCC 2 cut(s) 232, 662
CseI GACGC 1 cut(s) 24
Csp6I GTAC 1 cut(s) 497
CspAI ACCGGT 1 cut(s) 664
CviAII CATG 5 cut(s) 189, 194, 436, 641, 689
CviJI RGCY 9 cut(s) 82, 220, 288, 311, 482, 532, 624, 697, 720
CviKI_1 RGCY 9 cut(s) 82, 220, 288, 311, 482, 532, 624, 697, 720
CviQI GTAC 1 cut(s) 497
DdeI CTNAG 2 cut(s) 77, 253
DpnI GATC 9 cut(s) 75, 207, 258, 341, 418, 459, 506, 518, 567
DpnII GATC 9 cut(s) 73, 205, 256, 339, 416, 457, 504, 516, 565
Eco130I CCWWGG 1 cut(s) 87
Eco147I AGGCCT 1 cut(s) 697
Eco24I GRGCYC 1 cut(s) 313
Eco47I GGWCC 2 cut(s) 232, 662
Eco57I CTGAAG 1 cut(s) 482
Eco91I GGTNACC 1 cut(s) 648
EcoO65I GGTNACC 1 cut(s) 648
EcoT14I CCWWGG 1 cut(s) 87
EcoT38I GRGCYC 1 cut(s) 313
ErhI CCWWGG 1 cut(s) 87
Esp3I CGTCTC 1 cut(s) 554
FaeI CATG 5 cut(s) 192, 197, 439, 644, 692
FaqI GGGAC 1 cut(s) 485
FatI CATG 5 cut(s) 188, 193, 435, 640, 688
FblI GTMKAC 1 cut(s) 100
Fnu4HI GCNGC 6 cut(s) 225, 404, 445, 713, 726, 729
FokI GGATG 4 cut(s) 70, 187, 410, 687
FriOI GRGCYC 1 cut(s) 313
Fsp4HI GCNGC 6 cut(s) 225, 404, 445, 713, 726, 729
FspAI RTGCGCAY 1 cut(s) 434
FspBI CTAG 2 cut(s) 323, 347
FspI TGCGCA 1 cut(s) 434
GlaI GCGC 2 cut(s) 271, 434
GluI GCNGC 6 cut(s) 225, 404, 445, 713, 726, 729
HaeIII GGCC 2 cut(s) 82, 697
HapII CCGG 6 cut(s) 110, 221, 407, 479, 665, 704
HgaI GACGC 1 cut(s) 24
HhaI GCGC 2 cut(s) 272, 435
Hin1I GRCGYC 1 cut(s) 35
Hin1II CATG 5 cut(s) 192, 197, 439, 644, 692
Hin6I GCGC 2 cut(s) 270, 433
HinP1I GCGC 2 cut(s) 270, 433
HpaII CCGG 6 cut(s) 110, 221, 407, 479, 665, 704
HphI GGTGA 2 cut(s) 467, 595
Hpy166II GTNNAC 3 cut(s) 101, 265, 497
Hpy188I TCNGA 6 cut(s) 78, 256, 416, 421, 462, 488
Hpy188III TCNNGA 1 cut(s) 660
Hpy8I GTNNAC 3 cut(s) 101, 265, 497
Hpy99I CGWCG 1 cut(s) 492
HpyAV CCTTC 1 cut(s) 457
HpyCH4III ACNGT 1 cut(s) 654
HpyCH4IV ACGT 3 cut(s) 160, 370, 547
HpyCH4V TGCA 4 cut(s) 188, 367, 618, 731
HpyF10VI GCNNNNNNNGC 2 cut(s) 317, 441
HpyF3I CTNAG 2 cut(s) 77, 253
HpySE526I ACGT 3 cut(s) 160, 370, 547
Hsp92I GRCGYC 1 cut(s) 35
Hsp92II CATG 5 cut(s) 192, 197, 439, 644, 692
HspAI GCGC 2 cut(s) 270, 433
KroI GCCGGC 2 cut(s) 220, 406
KroNI GCCGGC 2 cut(s) 222, 408
Kzo9I GATC 9 cut(s) 73, 205, 256, 339, 416, 457, 504, 516, 565
LmnI GCTCC 2 cut(s) 217, 709
Lsp1109I GCAGC 5 cut(s) 236, 456, 712, 715, 724
LweI GCATC 1 cut(s) 420
MaeI CTAG 2 cut(s) 323, 347
MaeII ACGT 3 cut(s) 160, 370, 547
MaeIII GTNAC 4 cut(s) 132, 385, 634, 648
MalI GATC 9 cut(s) 75, 207, 258, 341, 418, 459, 506, 518, 567
MboI GATC 9 cut(s) 73, 205, 256, 339, 416, 457, 504, 516, 565
MboII GAAGA 2 cut(s) 200, 366
MflI RGATCY 2 cut(s) 73, 205
MhlI GDGCHC 2 cut(s) 313, 659
MmeI TCCRAC 4 cut(s) 375, 511, 540, 664
MnlI CCTC 9 cut(s) 49, 72, 106, 223, 485, 556, 568, 579, 708
MreI CGCCGGCG 1 cut(s) 406
MroNI GCCGGC 2 cut(s) 220, 406
MslI CAYNNNNRTG 1 cut(s) 198
MspI CCGG 6 cut(s) 110, 221, 407, 479, 665, 704
MwoI GCNNNNNNNGC 2 cut(s) 317, 441
NaeI GCCGGC 2 cut(s) 222, 408
NdeII GATC 9 cut(s) 73, 205, 256, 339, 416, 457, 504, 516, 565
NgoMIV GCCGGC 2 cut(s) 220, 406
NlaIII CATG 5 cut(s) 192, 197, 439, 644, 692
NlaIV GGNNCC 2 cut(s) 219, 590
NsbI TGCGCA 1 cut(s) 434
NspI RCATGY 1 cut(s) 197
PaqCI CACCTGC 1 cut(s) 603
PceI AGGCCT 1 cut(s) 697
PcsI WCGNNNNNNNCGW 1 cut(s) 348
PdiI GCCGGC 2 cut(s) 222, 408
PinAI ACCGGT 1 cut(s) 664
PkrI GCNGC 6 cut(s) 226, 405, 446, 714, 727, 730
PshAI GACNNNNGTC 1 cut(s) 34
Psp1406I AACGTT 2 cut(s) 160, 370
PspEI GGTNACC 1 cut(s) 648
PspN4I GGNNCC 2 cut(s) 219, 590
PspPI GGNCC 2 cut(s) 232, 662
PsuI RGATCY 2 cut(s) 73, 205
RsaI GTAC 1 cut(s) 498
RsaNI GTAC 1 cut(s) 497
RseI CAYNNNNRTG 1 cut(s) 198
SatI GCNGC 6 cut(s) 225, 404, 445, 713, 726, 729
Sau3AI GATC 9 cut(s) 73, 205, 256, 339, 416, 457, 504, 516, 565
Sau96I GGNCC 2 cut(s) 232, 662
SduI GDGCHC 2 cut(s) 313, 659
SfaNI GCATC 1 cut(s) 420
SfcI CTRYAG 1 cut(s) 315
SgrAI CRCCGGYG 1 cut(s) 406
SinI GGWCC 2 cut(s) 232, 662
SmiMI CAYNNNNRTG 1 cut(s) 198
SpeI ACTAGT 1 cut(s) 346
SseBI AGGCCT 1 cut(s) 697
SsiI CCGC 2 cut(s) 404, 502
SspI AATATT 1 cut(s) 606
SspMI CTAG 2 cut(s) 323, 347
StuI AGGCCT 1 cut(s) 697
StyI CCWWGG 1 cut(s) 87
TaaI ACNGT 1 cut(s) 654
TaiI ACGT 3 cut(s) 163, 373, 550
TaqI TCGA 5 cut(s) 342, 351, 519, 568, 597
TaqII GACCGA 1 cut(s) 249
TatI WGTACW 1 cut(s) 496
TauI GCSGC 1 cut(s) 406
TscAI CASTG 2 cut(s) 54, 75
TseI GCWGC 5 cut(s) 224, 444, 712, 725, 728
TspGWI ACGGA 2 cut(s) 282, 581
TspRI CASTG 2 cut(s) 54, 75
VpaK11BI GGWCC 2 cut(s) 232, 662
XceI RCATGY 1 cut(s) 197
XmiI GTMKAC 1 cut(s) 100
XspI CTAG 2 cut(s) 323, 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.