Rmu_sc0031708.1_g000001

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0031708.1
OG0000308
Physical Location & Seq
Forward (+)
291 .. 731
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0031708.1_g000001.1.cds

Sequence Viewer

Length: 441 bp
atggcaattgatgcaatgggagcccgctttgtctcctccctagcattgggtgatggcaagaaaccggtggacctgcgtccatccaaaggactgagacaacccgaagctttcatggtgggaaagctgctcacggcgccggaagactcccgtcgctctttccttggcatgttccgatctgcatggcggatcaatggcagactgagcgttgaagaagttggagaagacgacagggttctgttcactttcacagatccctctgatgtggatagggtttggaaaggtgcccctgtagcactagcgccgtatgacggtatcagttcggcaagcgagataccgaagaaatcatcctactggatgacgctgcaaggggtaccgccggcgttcaggtttgagcgtattatgcgcctgatcggtagtacgctgggagatttcaaggagttt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

147

Amino Acids

16.32

Weight (kDa)

9.04

Isoelectric Point (pI)

48.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 81
Acc65I GGTACC 1 cut(s) 370
AccB1I GGYRCC 3 cut(s) 133, 281, 370
AciI CCGC 3 cut(s) 25, 184, 374
AclWI GGATC 2 cut(s) 194, 245
AcyI GRCGYC 1 cut(s) 134
AfaI GTAC 2 cut(s) 372, 418
AfiI CCNNNNNNNGG 3 cut(s) 46, 86, 308
AgeI ACCGGT 1 cut(s) 64
AgsI TTSAA 2 cut(s) 209, 433
AluBI AGCT 2 cut(s) 107, 124
AluI AGCT 2 cut(s) 107, 124
Alw26I GTCTC 2 cut(s) 37, 88
AlwI GGATC 2 cut(s) 194, 245
ApeKI GCWGC 2 cut(s) 124, 361
AsiGI ACCGGT 1 cut(s) 64
Asp718I GGTACC 1 cut(s) 370
AspLEI GCGC 3 cut(s) 136, 301, 405
AspS9I GGNCC 1 cut(s) 70
AsuHPI GGTGA 1 cut(s) 62
AvaII GGWCC 1 cut(s) 70
BaeGI GKGCMC 1 cut(s) 286
BanI GGYRCC 3 cut(s) 133, 281, 370
BanII GRGCYC 1 cut(s) 25
BbsI GAAGAC 2 cut(s) 147, 228
BbvI GCAGC 2 cut(s) 111, 348
BccI CCATC 2 cut(s) 47, 88
BceAI ACGGC 2 cut(s) 147, 286
BcoDI GTCTC 2 cut(s) 37, 88
BfaI CTAG 2 cut(s) 41, 296
BfmI CTRYAG 1 cut(s) 288
BfoI RGCGCY 2 cut(s) 137, 302
BfuAI ACCTGC 1 cut(s) 81
BisI GCNGC 2 cut(s) 125, 362
BlsI GCNGC 2 cut(s) 126, 363
Bme18I GGWCC 1 cut(s) 70
BmgT120I GGNCC 1 cut(s) 70
BmiI GGNNCC 4 cut(s) 22, 135, 283, 372
BoxI GACNNNNGTC 2 cut(s) 75, 147
BpiI GAAGAC 2 cut(s) 147, 228
BsaHI GRCGYC 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 160
BsaWI WCCGGW 1 cut(s) 64
Bsc4I CCNNNNNNNGG 3 cut(s) 46, 86, 308
Bse118I RCCGGY 2 cut(s) 64, 376
Bse1I ACTGG 1 cut(s) 356
Bse3DI GCAATG 1 cut(s) 21
BseDI CCNNGG 1 cut(s) 160
BseGI GGATG 3 cut(s) 80, 344, 360
BseLI CCNNNNNNNGG 3 cut(s) 46, 86, 308
BseMI GCAATG 1 cut(s) 21
BseMII CTCAG 2 cut(s) 83, 191
BseNI ACTGG 1 cut(s) 356
BseRI GAGGAG 1 cut(s) 25
BseSI GKGCMC 1 cut(s) 286
BseXI GCAGC 2 cut(s) 111, 348
BseYI CCCAGC 1 cut(s) 421
BshNI GGYRCC 3 cut(s) 133, 281, 370
BshTI ACCGGT 1 cut(s) 64
BsiSI CCGG 3 cut(s) 65, 137, 377
BslI CCNNNNNNNGG 3 cut(s) 46, 86, 308
BsmAI GTCTC 2 cut(s) 37, 88
Bsp1286I GDGCHC 2 cut(s) 25, 286
Bsp143I GATC 4 cut(s) 173, 186, 250, 408
BspACI CCGC 3 cut(s) 25, 184, 374
BspCNI CTCAG 2 cut(s) 84, 192
BspLI GGNNCC 4 cut(s) 22, 135, 283, 372
BspMI ACCTGC 1 cut(s) 81
BspPI GGATC 2 cut(s) 194, 245
BspT107I GGYRCC 3 cut(s) 133, 281, 370
BsrDI GCAATG 1 cut(s) 21
BsrFI RCCGGY 2 cut(s) 64, 376
BsrI ACTGG 1 cut(s) 356
BssAI RCCGGY 2 cut(s) 64, 376
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 4 cut(s) 173, 186, 250, 408
BssNI GRCGYC 1 cut(s) 134
BssT1I CCWWGG 1 cut(s) 160
Bst4CI ACNGT 1 cut(s) 311
BstACI GRCGYC 1 cut(s) 134
BstAPI GCANNNNNTGC 1 cut(s) 11
BstC8I GCNNGC 3 cut(s) 25, 325, 378
BstDEI CTNAG 2 cut(s) 92, 200
BstF5I GGATG 3 cut(s) 80, 344, 360
BstH2I RGCGCY 2 cut(s) 137, 302
BstHHI GCGC 3 cut(s) 136, 301, 405
BstKTI GATC 4 cut(s) 176, 189, 253, 411
BstMAI GTCTC 2 cut(s) 37, 88
BstMBI GATC 4 cut(s) 173, 186, 250, 408
BstMWI GCNNNNNNNGC 6 cut(s) 11, 20, 133, 201, 290, 400
BstNSI RCATGY 1 cut(s) 169
BstPAI GACNNNNGTC 2 cut(s) 75, 147
BstSFI CTRYAG 1 cut(s) 288
BstSLI GKGCMC 1 cut(s) 286
BstV1I GCAGC 2 cut(s) 111, 348
BstV2I GAAGAC 2 cut(s) 147, 228
BstX2I RGATCY 1 cut(s) 250
BstYI RGATCY 1 cut(s) 250
BtsCI GGATG 3 cut(s) 80, 344, 360
BveI ACCTGC 1 cut(s) 81
Cac8I GCNNGC 3 cut(s) 25, 325, 378
CfoI GCGC 3 cut(s) 136, 301, 405
Cfr10I RCCGGY 2 cut(s) 64, 376
Cfr13I GGNCC 1 cut(s) 70
CseI GACGC 2 cut(s) 65, 367
Csp6I GTAC 2 cut(s) 371, 417
CspAI ACCGGT 1 cut(s) 64
CviAII CATG 3 cut(s) 112, 166, 180
CviJI RGCY 3 cut(s) 23, 107, 124
CviKI_1 RGCY 3 cut(s) 23, 107, 124
CviQI GTAC 2 cut(s) 371, 417
DdeI CTNAG 2 cut(s) 92, 200
DinI GGCGCC 1 cut(s) 135
DpnI GATC 4 cut(s) 175, 188, 252, 410
DpnII GATC 4 cut(s) 173, 186, 250, 408
EciI GGCGGA 1 cut(s) 199
Eco130I CCWWGG 1 cut(s) 160
Eco24I GRGCYC 1 cut(s) 25
Eco47I GGWCC 1 cut(s) 70
EcoT14I CCWWGG 1 cut(s) 160
EcoT38I GRGCYC 1 cut(s) 25
EgeI GGCGCC 1 cut(s) 135
EheI GGCGCC 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 160
FaeI CATG 3 cut(s) 115, 169, 183
FaiI YATR 5 cut(s) 113, 167, 181, 306, 401
FatI CATG 3 cut(s) 111, 165, 179
FauI CCCGC 1 cut(s) 32
Fnu4HI GCNGC 2 cut(s) 125, 362
FokI GGATG 3 cut(s) 67, 331, 367
FriOI GRGCYC 1 cut(s) 25
Fsp4HI GCNGC 2 cut(s) 125, 362
FspBI CTAG 2 cut(s) 41, 296
GlaI GCGC 3 cut(s) 135, 300, 404
GluI GCNGC 2 cut(s) 125, 362
GsaI CCCAGC 1 cut(s) 425
HaeII RGCGCY 2 cut(s) 137, 302
HapII CCGG 3 cut(s) 65, 137, 377
HgaI GACGC 2 cut(s) 65, 367
HhaI GCGC 3 cut(s) 136, 301, 405
Hin1I GRCGYC 1 cut(s) 134
Hin1II CATG 3 cut(s) 115, 169, 183
Hin6I GCGC 3 cut(s) 134, 299, 403
HinP1I GCGC 3 cut(s) 134, 299, 403
HindIII AAGCTT 1 cut(s) 105
HinfI GANTC 1 cut(s) 143
HpaII CCGG 3 cut(s) 65, 137, 377
HphI GGTGA 1 cut(s) 62
Hpy166II GTNNAC 2 cut(s) 70, 240
Hpy188I TCNGA 2 cut(s) 173, 259
Hpy8I GTNNAC 2 cut(s) 70, 240
Hpy99I CGWCG 1 cut(s) 153
HpyCH4III ACNGT 1 cut(s) 311
HpyCH4V TGCA 3 cut(s) 14, 179, 364
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 20, 133, 201, 290, 400
HpyF3I CTNAG 2 cut(s) 92, 200
Hsp92I GRCGYC 1 cut(s) 134
Hsp92II CATG 3 cut(s) 115, 169, 183
HspAI GCGC 3 cut(s) 134, 299, 403
KasI GGCGCC 1 cut(s) 133
KpnI GGTACC 1 cut(s) 374
KroI GCCGGC 1 cut(s) 376
KroNI GCCGGC 1 cut(s) 378
Kzo9I GATC 4 cut(s) 173, 186, 250, 408
LmnI GCTCC 1 cut(s) 20
Lsp1109I GCAGC 2 cut(s) 111, 348
MaeI CTAG 2 cut(s) 41, 296
MalI GATC 4 cut(s) 175, 188, 252, 410
MboI GATC 4 cut(s) 173, 186, 250, 408
MboII GAAGA 4 cut(s) 152, 221, 233, 349
MfeI CAATTG 1 cut(s) 6
MflI RGATCY 1 cut(s) 250
MhlI GDGCHC 2 cut(s) 25, 286
MluCI AATT 1 cut(s) 6
Mly113I GGCGCC 1 cut(s) 134
MlyI GAGTC 1 cut(s) 137
MmeI TCCRAC 1 cut(s) 196
MnlI CCTC 2 cut(s) 46, 265
MreI CGCCGGCG 1 cut(s) 376
MroNI GCCGGC 1 cut(s) 376
MspI CCGG 3 cut(s) 65, 137, 377
MunI CAATTG 1 cut(s) 6
MwoI GCNNNNNNNGC 6 cut(s) 11, 20, 133, 201, 290, 400
NaeI GCCGGC 1 cut(s) 378
NarI GGCGCC 1 cut(s) 134
NdeII GATC 4 cut(s) 173, 186, 250, 408
NgoMIV GCCGGC 1 cut(s) 376
NlaIII CATG 3 cut(s) 115, 169, 183
NlaIV GGNNCC 4 cut(s) 22, 135, 283, 372
NspI RCATGY 1 cut(s) 169
PdiI GCCGGC 1 cut(s) 378
PinAI ACCGGT 1 cut(s) 64
PkrI GCNGC 2 cut(s) 126, 363
PleI GAGTC 1 cut(s) 137
PluTI GGCGCC 1 cut(s) 137
PpsI GAGTC 1 cut(s) 137
PshAI GACNNNNGTC 2 cut(s) 75, 147
PspFI CCCAGC 1 cut(s) 421
PspN4I GGNNCC 4 cut(s) 22, 135, 283, 372
PspPI GGNCC 1 cut(s) 70
PsuI RGATCY 1 cut(s) 250
RsaI GTAC 2 cut(s) 372, 418
RsaNI GTAC 2 cut(s) 371, 417
SatI GCNGC 2 cut(s) 125, 362
Sau3AI GATC 4 cut(s) 173, 186, 250, 408
Sau96I GGNCC 1 cut(s) 70
SchI GAGTC 1 cut(s) 137
SduI GDGCHC 2 cut(s) 25, 286
SetI ASST 5 cut(s) 75, 109, 126, 283, 389
SfcI CTRYAG 1 cut(s) 288
SfoI GGCGCC 1 cut(s) 135
SgrAI CRCCGGYG 1 cut(s) 376
SinI GGWCC 1 cut(s) 70
Sse9I AATT 1 cut(s) 6
SsiI CCGC 3 cut(s) 25, 184, 374
SspDI GGCGCC 1 cut(s) 133
SspMI CTAG 2 cut(s) 41, 296
StyI CCWWGG 1 cut(s) 160
TaaI ACNGT 1 cut(s) 311
TasI AATT 1 cut(s) 6
TseI GCWGC 2 cut(s) 124, 361
TspDTI ATGAA 1 cut(s) 100
VpaK11BI GGWCC 1 cut(s) 70
XceI RCATGY 1 cut(s) 169
XspI CTAG 2 cut(s) 41, 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.