Rmu_sc0002586.1_g000034

negative regulation of oxidative stress-induced neuron death

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002586.1
OG0000308
Physical Location & Seq
Forward (+)
130646 .. 130954
309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002586.1_g000034.1.cds

Sequence Viewer

Length: 309 bp
atggcggacattgatgctatggttgcccgcttggcgtcgtctttggcactggcggaggggaaaagagcagtggatctgaggccatccaagggcaagggtctccgccaaccggaggtgtatatggttggcaagttactcacgaccagggagtataggcaacgttcttttttggggatgtttcgatctgcatggcatgttggtagagctcttcgggtggaaccagcagcaggggatccatttcttttctctttctcggatccgttggatcgctctcgtgtgtggcgtggtggcccgtggggttttaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

102

Amino Acids

11.45

Weight (kDa)

10.81

Isoelectric Point (pI)

47.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 5, 28, 53, 103
AclI AACGTT 1 cut(s) 160
AclWI GGATC 6 cut(s) 81, 227, 240, 251, 264, 273
AcyI GRCGYC 1 cut(s) 35
AfiI CCNNNNNNNGG 4 cut(s) 89, 109, 112, 227
AjnI CCWGG 1 cut(s) 143
AluBI AGCT 1 cut(s) 206
AluI AGCT 1 cut(s) 206
Alw21I GWGCWC 1 cut(s) 208
Alw26I GTCTC 1 cut(s) 104
AlwI GGATC 6 cut(s) 81, 227, 240, 251, 264, 273
AoxI GGCC 2 cut(s) 80, 289
ApeKI GCWGC 1 cut(s) 224
AspS9I GGNCC 1 cut(s) 290
BamHI GGATCC 2 cut(s) 232, 256
BanII GRGCYC 1 cut(s) 208
BauI CACGAG 1 cut(s) 273
Bbv12I GWGCWC 1 cut(s) 208
BbvI GCAGC 1 cut(s) 236
BccI CCATC 1 cut(s) 91
BciT130I CCWGG 1 cut(s) 145
BcoDI GTCTC 1 cut(s) 104
BglI GCCNNNNNGGC 1 cut(s) 32
BisI GCNGC 1 cut(s) 225
BlsI GCNGC 1 cut(s) 226
Bme1390I CCNGG 1 cut(s) 145
BmgT120I GGNCC 1 cut(s) 290
BmiI GGNNCC 3 cut(s) 219, 234, 258
BmrFI CCNGG 1 cut(s) 145
BmsI GCATC 1 cut(s) 4
BsaHI GRCGYC 1 cut(s) 35
BsaI GGTCTC 1 cut(s) 104
BsaJI CCNNGG 3 cut(s) 87, 144, 293
BsaWI WCCGGW 1 cut(s) 109
Bsc4I CCNNNNNNNGG 4 cut(s) 89, 109, 112, 227
Bse1I ACTGG 1 cut(s) 54
BseBI CCWGG 1 cut(s) 145
BseDI CCNNGG 3 cut(s) 87, 144, 293
BseGI GGATG 2 cut(s) 83, 180
BseLI CCNNNNNNNGG 4 cut(s) 89, 109, 112, 227
BseMII CTCAG 1 cut(s) 68
BseNI ACTGG 1 cut(s) 54
BseXI GCAGC 1 cut(s) 236
BshFI GGCC 2 cut(s) 82, 291
BsiHKAI GWGCWC 1 cut(s) 208
BsiSI CCGG 1 cut(s) 110
BslI CCNNNNNNNGG 4 cut(s) 89, 109, 112, 227
BsmAI GTCTC 1 cut(s) 104
BsnI GGCC 2 cut(s) 82, 291
Bso31I GGTCTC 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 208
Bsp143I GATC 5 cut(s) 73, 182, 232, 256, 265
BspACI CCGC 4 cut(s) 5, 28, 53, 103
BspANI GGCC 2 cut(s) 82, 291
BspCNI CTCAG 1 cut(s) 69
BspLI GGNNCC 3 cut(s) 219, 234, 258
BspPI GGATC 6 cut(s) 81, 227, 240, 251, 264, 273
BspQI GCTCTTC 1 cut(s) 213
BspTNI GGTCTC 1 cut(s) 104
BsrI ACTGG 1 cut(s) 54
BssECI CCNNGG 3 cut(s) 87, 144, 293
BssMI GATC 5 cut(s) 73, 182, 232, 256, 265
BssNI GRCGYC 1 cut(s) 35
BssSI CACGAG 1 cut(s) 273
BssT1I CCWWGG 1 cut(s) 87
Bst2BI CACGAG 1 cut(s) 273
Bst2UI CCWGG 1 cut(s) 145
Bst6I CTCTTC 1 cut(s) 213
BstACI GRCGYC 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 28
BstDEI CTNAG 1 cut(s) 77
BstDSI CCRYGG 1 cut(s) 293
BstF5I GGATG 2 cut(s) 83, 180
BstKTI GATC 5 cut(s) 76, 185, 235, 259, 268
BstMAI GTCTC 1 cut(s) 104
BstMBI GATC 5 cut(s) 73, 182, 232, 256, 265
BstMWI GCNNNNNNNGC 2 cut(s) 23, 32
BstNI CCWGG 1 cut(s) 145
BstNSI RCATGY 1 cut(s) 197
BstSCI CCNGG 1 cut(s) 143
BstV1I GCAGC 1 cut(s) 236
BstX2I RGATCY 3 cut(s) 73, 232, 256
BstYI RGATCY 3 cut(s) 73, 232, 256
BsuRI GGCC 2 cut(s) 82, 291
BtgI CCRYGG 1 cut(s) 293
BtsCI GGATG 2 cut(s) 83, 180
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 2 cut(s) 47, 75
Cac8I GCNNGC 1 cut(s) 28
Cfr13I GGNCC 1 cut(s) 290
CseI GACGC 1 cut(s) 24
CviAII CATG 2 cut(s) 189, 194
CviJI RGCY 3 cut(s) 82, 206, 291
CviKI_1 RGCY 3 cut(s) 82, 206, 291
DdeI CTNAG 1 cut(s) 77
DpnI GATC 5 cut(s) 75, 184, 234, 258, 267
DpnII GATC 5 cut(s) 73, 182, 232, 256, 265
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
EciI GGCGGA 3 cut(s) 20, 68, 92
Ecl136II GAGCTC 1 cut(s) 206
Eco130I CCWWGG 1 cut(s) 87
Eco24I GRGCYC 1 cut(s) 208
Eco31I GGTCTC 1 cut(s) 104
Eco53kI GAGCTC 1 cut(s) 206
EcoICRI GAGCTC 1 cut(s) 206
EcoRII CCWGG 1 cut(s) 143
EcoT14I CCWWGG 1 cut(s) 87
EcoT38I GRGCYC 1 cut(s) 208
ErhI CCWWGG 1 cut(s) 87
FaeI CATG 2 cut(s) 192, 197
FaiI YATR 6 cut(s) 20, 120, 122, 153, 190, 195
FatI CATG 2 cut(s) 188, 193
FauI CCCGC 1 cut(s) 35
Fnu4HI GCNGC 1 cut(s) 225
FokI GGATG 2 cut(s) 70, 187
FriOI GRGCYC 1 cut(s) 208
Fsp4HI GCNGC 1 cut(s) 225
GluI GCNGC 1 cut(s) 225
HaeIII GGCC 2 cut(s) 82, 291
HapII CCGG 1 cut(s) 110
HgaI GACGC 1 cut(s) 24
Hin1I GRCGYC 1 cut(s) 35
Hin1II CATG 2 cut(s) 192, 197
HpaII CCGG 1 cut(s) 110
Hpy188I TCNGA 2 cut(s) 78, 256
Hpy188III TCNNGA 1 cut(s) 139
Hpy99I CGWCG 1 cut(s) 40
HpyCH4IV ACGT 1 cut(s) 160
HpyCH4V TGCA 1 cut(s) 188
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 32
HpyF3I CTNAG 1 cut(s) 77
HpySE526I ACGT 1 cut(s) 160
Hsp92I GRCGYC 1 cut(s) 35
Hsp92II CATG 2 cut(s) 192, 197
Kzo9I GATC 5 cut(s) 73, 182, 232, 256, 265
LguI GCTCTTC 1 cut(s) 213
LpnPI CCDG 6 cut(s) 35, 123, 130, 157, 213, 234
Lsp1109I GCAGC 1 cut(s) 236
LweI GCATC 1 cut(s) 4
MaeII ACGT 1 cut(s) 160
MaeIII GTNAC 1 cut(s) 132
MalI GATC 5 cut(s) 75, 184, 234, 258, 267
MboI GATC 5 cut(s) 73, 182, 232, 256, 265
MboII GAAGA 1 cut(s) 200
MflI RGATCY 3 cut(s) 73, 232, 256
MhlI GDGCHC 1 cut(s) 208
MluCI AATT 1 cut(s) 304
MmeI TCCRAC 1 cut(s) 243
MnlI CCTC 3 cut(s) 49, 72, 106
MseI TTAA 1 cut(s) 303
MspI CCGG 1 cut(s) 110
MspR9I CCNGG 1 cut(s) 145
MvaI CCWGG 1 cut(s) 145
MwoI GCNNNNNNNGC 2 cut(s) 23, 32
NdeII GATC 5 cut(s) 73, 182, 232, 256, 265
NlaIII CATG 2 cut(s) 192, 197
NlaIV GGNNCC 3 cut(s) 219, 234, 258
NspI RCATGY 1 cut(s) 197
PciSI GCTCTTC 1 cut(s) 213
PcsI WCGNNNNNNNCGW 1 cut(s) 280
PkrI GCNGC 1 cut(s) 226
Psp124BI GAGCTC 1 cut(s) 208
Psp1406I AACGTT 1 cut(s) 160
Psp6I CCWGG 1 cut(s) 143
PspGI CCWGG 1 cut(s) 143
PspN4I GGNNCC 3 cut(s) 219, 234, 258
PspPI GGNCC 1 cut(s) 290
PsuI RGATCY 3 cut(s) 73, 232, 256
SacI GAGCTC 1 cut(s) 208
SapI GCTCTTC 1 cut(s) 213
SaqAI TTAA 1 cut(s) 303
SatI GCNGC 1 cut(s) 225
Sau3AI GATC 5 cut(s) 73, 182, 232, 256, 265
Sau96I GGNCC 1 cut(s) 290
ScrFI CCNGG 1 cut(s) 145
SduI GDGCHC 1 cut(s) 208
SetI ASST 3 cut(s) 117, 163, 208
SfaNI GCATC 1 cut(s) 4
Sse9I AATT 1 cut(s) 304
SsiI CCGC 4 cut(s) 5, 28, 53, 103
SstI GAGCTC 1 cut(s) 208
StyD4I CCNGG 1 cut(s) 143
StyI CCWWGG 1 cut(s) 87
TaiI ACGT 1 cut(s) 163
TaqI TCGA 1 cut(s) 181
TasI AATT 1 cut(s) 304
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TscAI CASTG 2 cut(s) 54, 75
TseI GCWGC 1 cut(s) 224
TspGWI ACGGA 1 cut(s) 249
TspRI CASTG 2 cut(s) 54, 75
XceI RCATGY 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.