Rmu_sc0036546.1_g000001

Ribonuclease H protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0036546.1
Physical Location & Seq
Reverse (-)
2650 .. 3739
1090 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0036546.1_g000001.1.cds

Sequence Viewer

Length: 1008 bp
ctgtttcgatctgcatggagaattaatggcagattgaatgttgaagaactcggagaagatgatagggtcttgttcacttttacagatccttcggatgtgaatagggtttggaaaggaggaccatcgggatataacagggctcctatagctttagcaccgtatgacggtgtcagtccggcaagggagatcccactgaagaaatcatcatattggatgacactgcaaggagtgccaccggccttcagatctgaacggattatgcgactgattgggagtaccctaggcgaattcatggaatttgatcgccccgcctttcggacccgagttttgcgcatcagggttgagatagattatgctaaacctctcctgtttcgtcgacgtttcagggtggaagatgaagtccaattcatggtgcagtttcgatatgacaagctgtttggtaggtgtggcacctgcggcctagttacccaagttggcctcccttgttcagggctggatctggaagaagaccgtgacatacctgttggcacggtggaacaacccatggctttagccgtgttacggggacaggaaaaccctaatgtcaatagggtaacaataaacaatcaaactctgattttcaaggctcaaatacctaatagtatacccgaagttattctacctcaatctgtgatggccatgcgtcaccatcgaagacaagtgcagattagagaattgagtgaaccaagactcaatgaagatctaatcacaggacaacgccgtatgactatgggcttgttggagggacccccgaacaacaatgatcaacctaagagaaagagaggacgtcctgttggaagtgtgaacaagctgccatatggaacaacaggaaaaggaagaaaaaaggatggaaaacaagaaaagacaaagagcaaaaagaccaacctgatgccgaggttgttagctgctgatgagcctgaaacaagcactaactctaaccctaaggggaaagagcaagtacttgcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.

Protein Analysis

335

Amino Acids

38.08

Weight (kDa)

9.96

Isoelectric Point (pI)

44.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 461
AatII GACGTC 1 cut(s) 829
Acc16I TGCGCA 1 cut(s) 332
Acc36I ACCTGC 1 cut(s) 461
AccB1I GGYRCC 1 cut(s) 449
AccB7I CCANNNNNTGG 1 cut(s) 409
AccI GTMKAC 2 cut(s) 376, 643
AciI CCGC 2 cut(s) 309, 456
AclWI GGATC 3 cut(s) 80, 181, 504
AcoI YGGCCR 1 cut(s) 675
AcsI RAATTY 2 cut(s) 287, 296
AcuI CTGAAG 2 cut(s) 215, 226
AcyI GRCGYC 1 cut(s) 826
AfaI GTAC 2 cut(s) 277, 999
AfiI CCNNNNNNNGG 5 cut(s) 164, 315, 409, 488, 561
AgsI TTSAA 3 cut(s) 37, 44, 622
AluBI AGCT 4 cut(s) 149, 433, 850, 944
AluI AGCT 4 cut(s) 149, 433, 850, 944
AlwI GGATC 3 cut(s) 80, 181, 504
Ama87I CYCGRG 1 cut(s) 321
AoxI GGCC 4 cut(s) 237, 457, 475, 675
ApeKI GCWGC 2 cut(s) 850, 944
ApoI RAATTY 2 cut(s) 287, 296
ArsI GACNNNNNNTTYG 4 cut(s) 310, 342, 419, 451
AseI ATTAAT 1 cut(s) 24
Asp700I GAANNNNTTC 1 cut(s) 654
AspA2I CCTAGG 1 cut(s) 280
AspLEI GCGC 1 cut(s) 333
AspS9I GGNCC 3 cut(s) 119, 318, 785
AsuHPI GGTGA 1 cut(s) 677
AvaI CYCGRG 1 cut(s) 321
AvaII GGWCC 3 cut(s) 119, 318, 785
AvrII CCTAGG 1 cut(s) 280
AxyI CCTNAGG 1 cut(s) 981
BalI TGGCCA 1 cut(s) 677
BanI GGYRCC 1 cut(s) 449
BanII GRGCYC 1 cut(s) 142
BarI GAAGNNNNNNTAC 2 cut(s) 642, 674
BbsI GAAGAC 2 cut(s) 513, 700
BbvI GCAGC 2 cut(s) 837, 931
BccI CCATC 4 cut(s) 130, 667, 696, 881
BceAI ACGGC 2 cut(s) 539, 744
BclI TGATCA 1 cut(s) 802
BfaI CTAG 2 cut(s) 281, 461
BfmI CTRYAG 1 cut(s) 144
BfuAI ACCTGC 1 cut(s) 461
BglII AGATCT 2 cut(s) 245, 739
BisI GCNGC 3 cut(s) 457, 851, 945
BlnI CCTAGG 1 cut(s) 280
BlsI GCNGC 3 cut(s) 458, 852, 946
BmcAI AGTACT 1 cut(s) 999
Bme18I GGWCC 3 cut(s) 119, 318, 785
BmeT110I CYCGRG 1 cut(s) 321
BmgT120I GGNCC 3 cut(s) 119, 318, 785
BmiI GGNNCC 5 cut(s) 141, 320, 451, 786, 787
BmsI GCATC 2 cut(s) 342, 918
BpiI GAAGAC 2 cut(s) 513, 700
BsaHI GRCGYC 1 cut(s) 826
BsaJI CCNNGG 3 cut(s) 280, 543, 932
Bsc4I CCNNNNNNNGG 5 cut(s) 164, 315, 409, 488, 561
Bse118I RCCGGY 1 cut(s) 235
Bse21I CCTNAGG 1 cut(s) 981
BseDI CCNNGG 3 cut(s) 280, 543, 932
BseGI GGATG 3 cut(s) 100, 219, 892
BseLI CCNNNNNNNGG 5 cut(s) 164, 315, 409, 488, 561
BseXI GCAGC 2 cut(s) 837, 931
BsgI GTGCAG 2 cut(s) 434, 722
BshFI GGCC 4 cut(s) 239, 459, 477, 677
BshNI GGYRCC 1 cut(s) 449
BsiHKCI CYCGRG 1 cut(s) 321
BsiSI CCGG 2 cut(s) 176, 236
BslFI GGGAC 2 cut(s) 579, 798
BslI CCNNNNNNNGG 5 cut(s) 164, 315, 409, 488, 561
BsmFI GGGAC 2 cut(s) 579, 798
BsnI GGCC 4 cut(s) 239, 459, 477, 677
BsoBI CYCGRG 1 cut(s) 321
Bsp1286I GDGCHC 1 cut(s) 142
Bsp143I GATC 8 cut(s) 8, 85, 186, 245, 301, 496, 739, 802
Bsp19I CCATGG 1 cut(s) 543
BspACI CCGC 2 cut(s) 309, 456
BspANI GGCC 4 cut(s) 239, 459, 477, 677
BspLI GGNNCC 5 cut(s) 141, 320, 451, 786, 787
BspMI ACCTGC 1 cut(s) 461
BspPI GGATC 3 cut(s) 80, 181, 504
BspT107I GGYRCC 1 cut(s) 449
BsrFI RCCGGY 1 cut(s) 235
BssAI RCCGGY 1 cut(s) 235
BssECI CCNNGG 3 cut(s) 280, 543, 932
BssMI GATC 8 cut(s) 8, 85, 186, 245, 301, 496, 739, 802
BssNAI GTATAC 1 cut(s) 644
BssNI GRCGYC 1 cut(s) 826
BssT1I CCWWGG 2 cut(s) 280, 543
Bst1107I GTATAC 1 cut(s) 644
Bst4CI ACNGT 4 cut(s) 159, 167, 512, 532
BstACI GRCGYC 1 cut(s) 826
BstAPI GCANNNNNTGC 1 cut(s) 229
BstDEI CTNAG 2 cut(s) 810, 981
BstDSI CCRYGG 1 cut(s) 543
BstENI CCTNNNNNAGG 1 cut(s) 486
BstF5I GGATG 3 cut(s) 100, 219, 892
BstHHI GCGC 1 cut(s) 333
BstKTI GATC 8 cut(s) 11, 88, 189, 248, 304, 499, 742, 805
BstMBI GATC 8 cut(s) 8, 85, 186, 245, 301, 496, 739, 802
BstMWI GCNNNNNNNGC 3 cut(s) 146, 229, 456
BstSFI CTRYAG 1 cut(s) 144
BstV1I GCAGC 2 cut(s) 837, 931
BstV2I GAAGAC 2 cut(s) 513, 700
BstX2I RGATCY 5 cut(s) 85, 186, 245, 496, 739
BstYI RGATCY 5 cut(s) 85, 186, 245, 496, 739
BstZ17I GTATAC 1 cut(s) 644
Bsu36I CCTNAGG 1 cut(s) 981
BsuRI GGCC 4 cut(s) 239, 459, 477, 677
BtgI CCRYGG 1 cut(s) 543
BtsCI GGATG 3 cut(s) 100, 219, 892
BtsI GCAGTG 1 cut(s) 218
BtsIMutI CAGTG 2 cut(s) 191, 218
BveI ACCTGC 1 cut(s) 461
CfoI GCGC 1 cut(s) 333
Cfr10I RCCGGY 1 cut(s) 235
Cfr13I GGNCC 3 cut(s) 119, 318, 785
CseI GACGC 1 cut(s) 671
Csp6I GTAC 2 cut(s) 276, 998
CviAII CATG 5 cut(s) 15, 292, 409, 544, 679
CviQI GTAC 2 cut(s) 276, 998
DdeI CTNAG 2 cut(s) 810, 981
DpnI GATC 8 cut(s) 10, 87, 188, 247, 303, 498, 741, 804
DpnII GATC 8 cut(s) 8, 85, 186, 245, 301, 496, 739, 802
EaeI YGGCCR 1 cut(s) 675
Eco130I CCWWGG 2 cut(s) 280, 543
Eco24I GRGCYC 1 cut(s) 142
Eco47I GGWCC 3 cut(s) 119, 318, 785
Eco57I CTGAAG 2 cut(s) 215, 226
Eco81I CCTNAGG 1 cut(s) 981
Eco88I CYCGRG 1 cut(s) 321
EcoNI CCTNNNNNAGG 1 cut(s) 486
EcoO109I RGGNCCY 1 cut(s) 785
EcoRI GAATTC 1 cut(s) 287
EcoT14I CCWWGG 2 cut(s) 280, 543
EcoT38I GRGCYC 1 cut(s) 142
ErhI CCWWGG 2 cut(s) 280, 543
FaeI CATG 5 cut(s) 18, 295, 412, 547, 682
FaqI GGGAC 2 cut(s) 579, 798
FatI CATG 5 cut(s) 14, 291, 408, 543, 678
FauI CCCGC 1 cut(s) 316
FauNDI CATATG 1 cut(s) 856
FbaI TGATCA 1 cut(s) 802
FblI GTMKAC 2 cut(s) 376, 643
Fnu4HI GCNGC 3 cut(s) 457, 851, 945
FokI GGATG 3 cut(s) 107, 226, 899
FriOI GRGCYC 1 cut(s) 142
Fsp4HI GCNGC 3 cut(s) 457, 851, 945
FspBI CTAG 2 cut(s) 281, 461
FspI TGCGCA 1 cut(s) 332
GlaI GCGC 1 cut(s) 332
GluI GCNGC 3 cut(s) 457, 851, 945
HaeIII GGCC 4 cut(s) 239, 459, 477, 677
HapII CCGG 2 cut(s) 176, 236
HgaI GACGC 1 cut(s) 671
HhaI GCGC 1 cut(s) 333
Hin1I GRCGYC 1 cut(s) 826
Hin1II CATG 5 cut(s) 18, 295, 412, 547, 682
Hin6I GCGC 1 cut(s) 331
HinP1I GCGC 1 cut(s) 331
HincII GTYRAC 1 cut(s) 377
HindII GTYRAC 1 cut(s) 377
HinfI GANTC 1 cut(s) 729
HpaII CCGG 2 cut(s) 176, 236
HphI GGTGA 1 cut(s) 677
Hpy166II GTNNAC 5 cut(s) 75, 377, 644, 722, 844
Hpy188I TCNGA 6 cut(s) 53, 94, 245, 250, 318, 615
Hpy188III TCNNGA 2 cut(s) 126, 500
Hpy8I GTNNAC 5 cut(s) 75, 377, 644, 722, 844
Hpy99I CGWCG 2 cut(s) 378, 381
HpyAV CCTTC 2 cut(s) 99, 250
HpyCH4III ACNGT 4 cut(s) 159, 167, 512, 532
HpyCH4IV ACGT 2 cut(s) 379, 826
HpyCH4V TGCA 4 cut(s) 14, 223, 415, 703
HpyF10VI GCNNNNNNNGC 3 cut(s) 146, 229, 456
HpyF3I CTNAG 2 cut(s) 810, 981
HpySE526I ACGT 2 cut(s) 379, 826
Hsp92I GRCGYC 1 cut(s) 826
Hsp92II CATG 5 cut(s) 18, 295, 412, 547, 682
HspAI GCGC 1 cut(s) 331
KflI GGGWCCC 1 cut(s) 785
Ksp22I TGATCA 1 cut(s) 802
Kzo9I GATC 8 cut(s) 8, 85, 186, 245, 301, 496, 739, 802
LmnI GCTCC 1 cut(s) 145
Lsp1109I GCAGC 2 cut(s) 837, 931
LweI GCATC 2 cut(s) 342, 918
MaeI CTAG 2 cut(s) 281, 461
MaeII ACGT 2 cut(s) 379, 826
MaeIII GTNAC 5 cut(s) 463, 512, 558, 592, 683
MalI GATC 8 cut(s) 10, 87, 188, 247, 303, 498, 741, 804
MboI GATC 8 cut(s) 8, 85, 186, 245, 301, 496, 739, 802
MboII GAAGA 9 cut(s) 56, 68, 208, 404, 515, 518, 705, 749, 888
MflI RGATCY 5 cut(s) 85, 186, 245, 496, 739
MhlI GDGCHC 1 cut(s) 142
MlsI TGGCCA 1 cut(s) 677
MluCI AATT 5 cut(s) 21, 287, 296, 404, 713
MluNI TGGCCA 1 cut(s) 677
MlyI GAGTC 1 cut(s) 723
MmeI TCCRAC 2 cut(s) 759, 814
MnlI CCTC 7 cut(s) 110, 372, 488, 672, 775, 815, 927
Mox20I TGGCCA 1 cut(s) 677
MroXI GAANNNNTTC 1 cut(s) 654
MscI TGGCCA 1 cut(s) 677
MseI TTAA 2 cut(s) 24, 1006
Msp20I TGGCCA 1 cut(s) 677
MspI CCGG 2 cut(s) 176, 236
MwoI GCNNNNNNNGC 3 cut(s) 146, 229, 456
NcoI CCATGG 1 cut(s) 543
NdeI CATATG 1 cut(s) 856
NdeII GATC 8 cut(s) 8, 85, 186, 245, 301, 496, 739, 802
NlaIII CATG 5 cut(s) 18, 295, 412, 547, 682
NlaIV GGNNCC 5 cut(s) 141, 320, 451, 786, 787
NmeAIII GCCGAG 1 cut(s) 957
NmuCI GTSAC 2 cut(s) 512, 683
NsbI TGCGCA 1 cut(s) 332
PaqCI CACCTGC 1 cut(s) 461
PcsI WCGNNNNNNNCGW 1 cut(s) 259
PdmI GAANNNNTTC 1 cut(s) 654
PflFI GACNNNGTC 1 cut(s) 167
PflMI CCANNNNNTGG 1 cut(s) 409
PkrI GCNGC 3 cut(s) 458, 852, 946
PleI GAGTC 1 cut(s) 723
PpsI GAGTC 1 cut(s) 723
PpuMI RGGWCCY 1 cut(s) 785
PshBI ATTAAT 1 cut(s) 24
Psp5II RGGWCCY 1 cut(s) 785
PspN4I GGNNCC 5 cut(s) 141, 320, 451, 786, 787
PspPI GGNCC 3 cut(s) 119, 318, 785
PspPPI RGGWCCY 1 cut(s) 785
PsuI RGATCY 5 cut(s) 85, 186, 245, 496, 739
PsyI GACNNNGTC 1 cut(s) 167
RsaI GTAC 2 cut(s) 277, 999
RsaNI GTAC 2 cut(s) 276, 998
SalI GTCGAC 1 cut(s) 375
SaqAI TTAA 2 cut(s) 24, 1006
SatI GCNGC 3 cut(s) 457, 851, 945
Sau3AI GATC 8 cut(s) 8, 85, 186, 245, 301, 496, 739, 802
Sau96I GGNCC 3 cut(s) 119, 318, 785
ScaI AGTACT 1 cut(s) 999
SchI GAGTC 1 cut(s) 723
SduI GDGCHC 1 cut(s) 142
SfaNI GCATC 2 cut(s) 342, 918
SfcI CTRYAG 1 cut(s) 144
SgrDI CGTCGACG 1 cut(s) 375
SinI GGWCC 3 cut(s) 119, 318, 785
Sse9I AATT 5 cut(s) 21, 287, 296, 404, 713
SsiI CCGC 2 cut(s) 309, 456
SspMI CTAG 2 cut(s) 281, 461
StyI CCWWGG 2 cut(s) 280, 543
TaaI ACNGT 4 cut(s) 159, 167, 512, 532
TaiI ACGT 2 cut(s) 382, 829
TaqI TCGA 4 cut(s) 7, 376, 421, 691
TasI AATT 5 cut(s) 21, 287, 296, 404, 713
TatI WGTACW 1 cut(s) 997
TauI GCSGC 1 cut(s) 459
Tru1I TTAA 2 cut(s) 24, 1006
Tru9I TTAA 2 cut(s) 24, 1006
TscAI CASTG 2 cut(s) 198, 225
TseFI GTSAC 2 cut(s) 512, 683
TseI GCWGC 2 cut(s) 850, 944
Tsp45I GTSAC 2 cut(s) 512, 683
TspDTI ATGAA 4 cut(s) 280, 397, 411, 750
TspGWI ACGGA 1 cut(s) 268
TspRI CASTG 2 cut(s) 198, 225
Tth111I GACNNNGTC 1 cut(s) 167
Van91I CCANNNNNTGG 1 cut(s) 409
VpaK11BI GGWCC 3 cut(s) 119, 318, 785
VspI ATTAAT 1 cut(s) 24
XagI CCTNNNNNAGG 1 cut(s) 486
XapI RAATTY 2 cut(s) 287, 296
XmaJI CCTAGG 1 cut(s) 280
XmiI GTMKAC 2 cut(s) 376, 643
XmnI GAANNNNTTC 1 cut(s) 654
XspI CTAG 2 cut(s) 281, 461
ZraI GACGTC 1 cut(s) 827
ZrmI AGTACT 1 cut(s) 999
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.