Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 461 |
| AatII | GACGTC | 1 cut(s) | 829 |
| Acc16I | TGCGCA | 1 cut(s) | 332 |
| Acc36I | ACCTGC | 1 cut(s) | 461 |
| AccB1I | GGYRCC | 1 cut(s) | 449 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 409 |
| AccI | GTMKAC | 2 cut(s) | 376, 643 |
| AciI | CCGC | 2 cut(s) | 309, 456 |
| AclWI | GGATC | 3 cut(s) | 80, 181, 504 |
| AcoI | YGGCCR | 1 cut(s) | 675 |
| AcsI | RAATTY | 2 cut(s) | 287, 296 |
| AcuI | CTGAAG | 2 cut(s) | 215, 226 |
| AcyI | GRCGYC | 1 cut(s) | 826 |
| AfaI | GTAC | 2 cut(s) | 277, 999 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 164, 315, 409, 488, 561 |
| AgsI | TTSAA | 3 cut(s) | 37, 44, 622 |
| AluBI | AGCT | 4 cut(s) | 149, 433, 850, 944 |
| AluI | AGCT | 4 cut(s) | 149, 433, 850, 944 |
| AlwI | GGATC | 3 cut(s) | 80, 181, 504 |
| Ama87I | CYCGRG | 1 cut(s) | 321 |
| AoxI | GGCC | 4 cut(s) | 237, 457, 475, 675 |
| ApeKI | GCWGC | 2 cut(s) | 850, 944 |
| ApoI | RAATTY | 2 cut(s) | 287, 296 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 310, 342, 419, 451 |
| AseI | ATTAAT | 1 cut(s) | 24 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 654 |
| AspA2I | CCTAGG | 1 cut(s) | 280 |
| AspLEI | GCGC | 1 cut(s) | 333 |
| AspS9I | GGNCC | 3 cut(s) | 119, 318, 785 |
| AsuHPI | GGTGA | 1 cut(s) | 677 |
| AvaI | CYCGRG | 1 cut(s) | 321 |
| AvaII | GGWCC | 3 cut(s) | 119, 318, 785 |
| AvrII | CCTAGG | 1 cut(s) | 280 |
| AxyI | CCTNAGG | 1 cut(s) | 981 |
| BalI | TGGCCA | 1 cut(s) | 677 |
| BanI | GGYRCC | 1 cut(s) | 449 |
| BanII | GRGCYC | 1 cut(s) | 142 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 642, 674 |
| BbsI | GAAGAC | 2 cut(s) | 513, 700 |
| BbvI | GCAGC | 2 cut(s) | 837, 931 |
| BccI | CCATC | 4 cut(s) | 130, 667, 696, 881 |
| BceAI | ACGGC | 2 cut(s) | 539, 744 |
| BclI | TGATCA | 1 cut(s) | 802 |
| BfaI | CTAG | 2 cut(s) | 281, 461 |
| BfmI | CTRYAG | 1 cut(s) | 144 |
| BfuAI | ACCTGC | 1 cut(s) | 461 |
| BglII | AGATCT | 2 cut(s) | 245, 739 |
| BisI | GCNGC | 3 cut(s) | 457, 851, 945 |
| BlnI | CCTAGG | 1 cut(s) | 280 |
| BlsI | GCNGC | 3 cut(s) | 458, 852, 946 |
| BmcAI | AGTACT | 1 cut(s) | 999 |
| Bme18I | GGWCC | 3 cut(s) | 119, 318, 785 |
| BmeT110I | CYCGRG | 1 cut(s) | 321 |
| BmgT120I | GGNCC | 3 cut(s) | 119, 318, 785 |
| BmiI | GGNNCC | 5 cut(s) | 141, 320, 451, 786, 787 |
| BmsI | GCATC | 2 cut(s) | 342, 918 |
| BpiI | GAAGAC | 2 cut(s) | 513, 700 |
| BsaHI | GRCGYC | 1 cut(s) | 826 |
| BsaJI | CCNNGG | 3 cut(s) | 280, 543, 932 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 164, 315, 409, 488, 561 |
| Bse118I | RCCGGY | 1 cut(s) | 235 |
| Bse21I | CCTNAGG | 1 cut(s) | 981 |
| BseDI | CCNNGG | 3 cut(s) | 280, 543, 932 |
| BseGI | GGATG | 3 cut(s) | 100, 219, 892 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 164, 315, 409, 488, 561 |
| BseXI | GCAGC | 2 cut(s) | 837, 931 |
| BsgI | GTGCAG | 2 cut(s) | 434, 722 |
| BshFI | GGCC | 4 cut(s) | 239, 459, 477, 677 |
| BshNI | GGYRCC | 1 cut(s) | 449 |
| BsiHKCI | CYCGRG | 1 cut(s) | 321 |
| BsiSI | CCGG | 2 cut(s) | 176, 236 |
| BslFI | GGGAC | 2 cut(s) | 579, 798 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 164, 315, 409, 488, 561 |
| BsmFI | GGGAC | 2 cut(s) | 579, 798 |
| BsnI | GGCC | 4 cut(s) | 239, 459, 477, 677 |
| BsoBI | CYCGRG | 1 cut(s) | 321 |
| Bsp1286I | GDGCHC | 1 cut(s) | 142 |
| Bsp143I | GATC | 8 cut(s) | 8, 85, 186, 245, 301, 496, 739, 802 |
| Bsp19I | CCATGG | 1 cut(s) | 543 |
| BspACI | CCGC | 2 cut(s) | 309, 456 |
| BspANI | GGCC | 4 cut(s) | 239, 459, 477, 677 |
| BspLI | GGNNCC | 5 cut(s) | 141, 320, 451, 786, 787 |
| BspMI | ACCTGC | 1 cut(s) | 461 |
| BspPI | GGATC | 3 cut(s) | 80, 181, 504 |
| BspT107I | GGYRCC | 1 cut(s) | 449 |
| BsrFI | RCCGGY | 1 cut(s) | 235 |
| BssAI | RCCGGY | 1 cut(s) | 235 |
| BssECI | CCNNGG | 3 cut(s) | 280, 543, 932 |
| BssMI | GATC | 8 cut(s) | 8, 85, 186, 245, 301, 496, 739, 802 |
| BssNAI | GTATAC | 1 cut(s) | 644 |
| BssNI | GRCGYC | 1 cut(s) | 826 |
| BssT1I | CCWWGG | 2 cut(s) | 280, 543 |
| Bst1107I | GTATAC | 1 cut(s) | 644 |
| Bst4CI | ACNGT | 4 cut(s) | 159, 167, 512, 532 |
| BstACI | GRCGYC | 1 cut(s) | 826 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 229 |
| BstDEI | CTNAG | 2 cut(s) | 810, 981 |
| BstDSI | CCRYGG | 1 cut(s) | 543 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 486 |
| BstF5I | GGATG | 3 cut(s) | 100, 219, 892 |
| BstHHI | GCGC | 1 cut(s) | 333 |
| BstKTI | GATC | 8 cut(s) | 11, 88, 189, 248, 304, 499, 742, 805 |
| BstMBI | GATC | 8 cut(s) | 8, 85, 186, 245, 301, 496, 739, 802 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 146, 229, 456 |
| BstSFI | CTRYAG | 1 cut(s) | 144 |
| BstV1I | GCAGC | 2 cut(s) | 837, 931 |
| BstV2I | GAAGAC | 2 cut(s) | 513, 700 |
| BstX2I | RGATCY | 5 cut(s) | 85, 186, 245, 496, 739 |
| BstYI | RGATCY | 5 cut(s) | 85, 186, 245, 496, 739 |
| BstZ17I | GTATAC | 1 cut(s) | 644 |
| Bsu36I | CCTNAGG | 1 cut(s) | 981 |
| BsuRI | GGCC | 4 cut(s) | 239, 459, 477, 677 |
| BtgI | CCRYGG | 1 cut(s) | 543 |
| BtsCI | GGATG | 3 cut(s) | 100, 219, 892 |
| BtsI | GCAGTG | 1 cut(s) | 218 |
| BtsIMutI | CAGTG | 2 cut(s) | 191, 218 |
| BveI | ACCTGC | 1 cut(s) | 461 |
| CfoI | GCGC | 1 cut(s) | 333 |
| Cfr10I | RCCGGY | 1 cut(s) | 235 |
| Cfr13I | GGNCC | 3 cut(s) | 119, 318, 785 |
| CseI | GACGC | 1 cut(s) | 671 |
| Csp6I | GTAC | 2 cut(s) | 276, 998 |
| CviAII | CATG | 5 cut(s) | 15, 292, 409, 544, 679 |
| CviQI | GTAC | 2 cut(s) | 276, 998 |
| DdeI | CTNAG | 2 cut(s) | 810, 981 |
| DpnI | GATC | 8 cut(s) | 10, 87, 188, 247, 303, 498, 741, 804 |
| DpnII | GATC | 8 cut(s) | 8, 85, 186, 245, 301, 496, 739, 802 |
| EaeI | YGGCCR | 1 cut(s) | 675 |
| Eco130I | CCWWGG | 2 cut(s) | 280, 543 |
| Eco24I | GRGCYC | 1 cut(s) | 142 |
| Eco47I | GGWCC | 3 cut(s) | 119, 318, 785 |
| Eco57I | CTGAAG | 2 cut(s) | 215, 226 |
| Eco81I | CCTNAGG | 1 cut(s) | 981 |
| Eco88I | CYCGRG | 1 cut(s) | 321 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 486 |
| EcoO109I | RGGNCCY | 1 cut(s) | 785 |
| EcoRI | GAATTC | 1 cut(s) | 287 |
| EcoT14I | CCWWGG | 2 cut(s) | 280, 543 |
| EcoT38I | GRGCYC | 1 cut(s) | 142 |
| ErhI | CCWWGG | 2 cut(s) | 280, 543 |
| FaeI | CATG | 5 cut(s) | 18, 295, 412, 547, 682 |
| FaqI | GGGAC | 2 cut(s) | 579, 798 |
| FatI | CATG | 5 cut(s) | 14, 291, 408, 543, 678 |
| FauI | CCCGC | 1 cut(s) | 316 |
| FauNDI | CATATG | 1 cut(s) | 856 |
| FbaI | TGATCA | 1 cut(s) | 802 |
| FblI | GTMKAC | 2 cut(s) | 376, 643 |
| Fnu4HI | GCNGC | 3 cut(s) | 457, 851, 945 |
| FokI | GGATG | 3 cut(s) | 107, 226, 899 |
| FriOI | GRGCYC | 1 cut(s) | 142 |
| Fsp4HI | GCNGC | 3 cut(s) | 457, 851, 945 |
| FspBI | CTAG | 2 cut(s) | 281, 461 |
| FspI | TGCGCA | 1 cut(s) | 332 |
| GlaI | GCGC | 1 cut(s) | 332 |
| GluI | GCNGC | 3 cut(s) | 457, 851, 945 |
| HaeIII | GGCC | 4 cut(s) | 239, 459, 477, 677 |
| HapII | CCGG | 2 cut(s) | 176, 236 |
| HgaI | GACGC | 1 cut(s) | 671 |
| HhaI | GCGC | 1 cut(s) | 333 |
| Hin1I | GRCGYC | 1 cut(s) | 826 |
| Hin1II | CATG | 5 cut(s) | 18, 295, 412, 547, 682 |
| Hin6I | GCGC | 1 cut(s) | 331 |
| HinP1I | GCGC | 1 cut(s) | 331 |
| HincII | GTYRAC | 1 cut(s) | 377 |
| HindII | GTYRAC | 1 cut(s) | 377 |
| HinfI | GANTC | 1 cut(s) | 729 |
| HpaII | CCGG | 2 cut(s) | 176, 236 |
| HphI | GGTGA | 1 cut(s) | 677 |
| Hpy166II | GTNNAC | 5 cut(s) | 75, 377, 644, 722, 844 |
| Hpy188I | TCNGA | 6 cut(s) | 53, 94, 245, 250, 318, 615 |
| Hpy188III | TCNNGA | 2 cut(s) | 126, 500 |
| Hpy8I | GTNNAC | 5 cut(s) | 75, 377, 644, 722, 844 |
| Hpy99I | CGWCG | 2 cut(s) | 378, 381 |
| HpyAV | CCTTC | 2 cut(s) | 99, 250 |
| HpyCH4III | ACNGT | 4 cut(s) | 159, 167, 512, 532 |
| HpyCH4IV | ACGT | 2 cut(s) | 379, 826 |
| HpyCH4V | TGCA | 4 cut(s) | 14, 223, 415, 703 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 146, 229, 456 |
| HpyF3I | CTNAG | 2 cut(s) | 810, 981 |
| HpySE526I | ACGT | 2 cut(s) | 379, 826 |
| Hsp92I | GRCGYC | 1 cut(s) | 826 |
| Hsp92II | CATG | 5 cut(s) | 18, 295, 412, 547, 682 |
| HspAI | GCGC | 1 cut(s) | 331 |
| KflI | GGGWCCC | 1 cut(s) | 785 |
| Ksp22I | TGATCA | 1 cut(s) | 802 |
| Kzo9I | GATC | 8 cut(s) | 8, 85, 186, 245, 301, 496, 739, 802 |
| LmnI | GCTCC | 1 cut(s) | 145 |
| Lsp1109I | GCAGC | 2 cut(s) | 837, 931 |
| LweI | GCATC | 2 cut(s) | 342, 918 |
| MaeI | CTAG | 2 cut(s) | 281, 461 |
| MaeII | ACGT | 2 cut(s) | 379, 826 |
| MaeIII | GTNAC | 5 cut(s) | 463, 512, 558, 592, 683 |
| MalI | GATC | 8 cut(s) | 10, 87, 188, 247, 303, 498, 741, 804 |
| MboI | GATC | 8 cut(s) | 8, 85, 186, 245, 301, 496, 739, 802 |
| MboII | GAAGA | 9 cut(s) | 56, 68, 208, 404, 515, 518, 705, 749, 888 |
| MflI | RGATCY | 5 cut(s) | 85, 186, 245, 496, 739 |
| MhlI | GDGCHC | 1 cut(s) | 142 |
| MlsI | TGGCCA | 1 cut(s) | 677 |
| MluCI | AATT | 5 cut(s) | 21, 287, 296, 404, 713 |
| MluNI | TGGCCA | 1 cut(s) | 677 |
| MlyI | GAGTC | 1 cut(s) | 723 |
| MmeI | TCCRAC | 2 cut(s) | 759, 814 |
| MnlI | CCTC | 7 cut(s) | 110, 372, 488, 672, 775, 815, 927 |
| Mox20I | TGGCCA | 1 cut(s) | 677 |
| MroXI | GAANNNNTTC | 1 cut(s) | 654 |
| MscI | TGGCCA | 1 cut(s) | 677 |
| MseI | TTAA | 2 cut(s) | 24, 1006 |
| Msp20I | TGGCCA | 1 cut(s) | 677 |
| MspI | CCGG | 2 cut(s) | 176, 236 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 146, 229, 456 |
| NcoI | CCATGG | 1 cut(s) | 543 |
| NdeI | CATATG | 1 cut(s) | 856 |
| NdeII | GATC | 8 cut(s) | 8, 85, 186, 245, 301, 496, 739, 802 |
| NlaIII | CATG | 5 cut(s) | 18, 295, 412, 547, 682 |
| NlaIV | GGNNCC | 5 cut(s) | 141, 320, 451, 786, 787 |
| NmeAIII | GCCGAG | 1 cut(s) | 957 |
| NmuCI | GTSAC | 2 cut(s) | 512, 683 |
| NsbI | TGCGCA | 1 cut(s) | 332 |
| PaqCI | CACCTGC | 1 cut(s) | 461 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 259 |
| PdmI | GAANNNNTTC | 1 cut(s) | 654 |
| PflFI | GACNNNGTC | 1 cut(s) | 167 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 409 |
| PkrI | GCNGC | 3 cut(s) | 458, 852, 946 |
| PleI | GAGTC | 1 cut(s) | 723 |
| PpsI | GAGTC | 1 cut(s) | 723 |
| PpuMI | RGGWCCY | 1 cut(s) | 785 |
| PshBI | ATTAAT | 1 cut(s) | 24 |
| Psp5II | RGGWCCY | 1 cut(s) | 785 |
| PspN4I | GGNNCC | 5 cut(s) | 141, 320, 451, 786, 787 |
| PspPI | GGNCC | 3 cut(s) | 119, 318, 785 |
| PspPPI | RGGWCCY | 1 cut(s) | 785 |
| PsuI | RGATCY | 5 cut(s) | 85, 186, 245, 496, 739 |
| PsyI | GACNNNGTC | 1 cut(s) | 167 |
| RsaI | GTAC | 2 cut(s) | 277, 999 |
| RsaNI | GTAC | 2 cut(s) | 276, 998 |
| SalI | GTCGAC | 1 cut(s) | 375 |
| SaqAI | TTAA | 2 cut(s) | 24, 1006 |
| SatI | GCNGC | 3 cut(s) | 457, 851, 945 |
| Sau3AI | GATC | 8 cut(s) | 8, 85, 186, 245, 301, 496, 739, 802 |
| Sau96I | GGNCC | 3 cut(s) | 119, 318, 785 |
| ScaI | AGTACT | 1 cut(s) | 999 |
| SchI | GAGTC | 1 cut(s) | 723 |
| SduI | GDGCHC | 1 cut(s) | 142 |
| SfaNI | GCATC | 2 cut(s) | 342, 918 |
| SfcI | CTRYAG | 1 cut(s) | 144 |
| SgrDI | CGTCGACG | 1 cut(s) | 375 |
| SinI | GGWCC | 3 cut(s) | 119, 318, 785 |
| Sse9I | AATT | 5 cut(s) | 21, 287, 296, 404, 713 |
| SsiI | CCGC | 2 cut(s) | 309, 456 |
| SspMI | CTAG | 2 cut(s) | 281, 461 |
| StyI | CCWWGG | 2 cut(s) | 280, 543 |
| TaaI | ACNGT | 4 cut(s) | 159, 167, 512, 532 |
| TaiI | ACGT | 2 cut(s) | 382, 829 |
| TaqI | TCGA | 4 cut(s) | 7, 376, 421, 691 |
| TasI | AATT | 5 cut(s) | 21, 287, 296, 404, 713 |
| TatI | WGTACW | 1 cut(s) | 997 |
| TauI | GCSGC | 1 cut(s) | 459 |
| Tru1I | TTAA | 2 cut(s) | 24, 1006 |
| Tru9I | TTAA | 2 cut(s) | 24, 1006 |
| TscAI | CASTG | 2 cut(s) | 198, 225 |
| TseFI | GTSAC | 2 cut(s) | 512, 683 |
| TseI | GCWGC | 2 cut(s) | 850, 944 |
| Tsp45I | GTSAC | 2 cut(s) | 512, 683 |
| TspDTI | ATGAA | 4 cut(s) | 280, 397, 411, 750 |
| TspGWI | ACGGA | 1 cut(s) | 268 |
| TspRI | CASTG | 2 cut(s) | 198, 225 |
| Tth111I | GACNNNGTC | 1 cut(s) | 167 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 409 |
| VpaK11BI | GGWCC | 3 cut(s) | 119, 318, 785 |
| VspI | ATTAAT | 1 cut(s) | 24 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 486 |
| XapI | RAATTY | 2 cut(s) | 287, 296 |
| XmaJI | CCTAGG | 1 cut(s) | 280 |
| XmiI | GTMKAC | 2 cut(s) | 376, 643 |
| XmnI | GAANNNNTTC | 1 cut(s) | 654 |
| XspI | CTAG | 2 cut(s) | 281, 461 |
| ZraI | GACGTC | 1 cut(s) | 827 |
| ZrmI | AGTACT | 1 cut(s) | 999 |