Rmu_ssc0000100.1_g000036

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000100.1
OG0000308
Physical Location & Seq
Forward (+)
150803 .. 151635
833 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000100.1_g000036.1.cds

Sequence Viewer

Length: 600 bp
atggcatcccgcttggcctcctccctaacgctggctgatggaaagcaaccggtggacttgcctttagcaccgtatgacggtgtcagtccgacaagggatataccactgaagaaatcatcctattggatgacactgcaaggagtcccaccggccttcagatctgaacgtattatgcatctgattgggagtacactaggcgagttcatggaatttgatcgcccggcctttcggactcgattcttgcatatcagggttaagatcgattatgtcaaacctctcctgttttgtcgacgttttagggtggaagatgaagtccagttcatggtgcagtttcgatatgacaaactgtttggcaggtgcggcacctgcagcctcgttacccatgttggcctcccttgttcagggcctgatctggaggaagaccgtgacatacctgttggcacggtggagcagcccacggctttggccgtgttacgggaacaagaaaaccctaatgtcactaggataacgataaacaatcaaactctgatcttcaaggctcaaatatctaatagcatacccgaagctatcctacctcaatctgtgatggccataatgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

199

Amino Acids

22.5

Weight (kDa)

7.68

Isoelectric Point (pI)

47.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 345, 374
Acc36I ACCTGC 2 cut(s) 345, 374
AccB1I GGYRCC 1 cut(s) 362
AccB7I CCANNNNNTGG 1 cut(s) 322
AccI GTMKAC 1 cut(s) 289
AciI CCGC 2 cut(s) 10, 360
AcoI YGGCCR 2 cut(s) 465, 588
AcsI RAATTY 1 cut(s) 209
AcuI CTGAAG 2 cut(s) 128, 139
AfaI GTAC 1 cut(s) 190
AfiI CCNNNNNNNGG 5 cut(s) 31, 77, 322, 401, 474
AgeI ACCGGT 1 cut(s) 49
AgsI TTSAA 1 cut(s) 535
AluBI AGCT 1 cut(s) 566
AluI AGCT 1 cut(s) 566
AlwNI CAGNNNCTG 1 cut(s) 407
AoxI GGCC 7 cut(s) 15, 150, 222, 388, 404, 465, 588
ApeKI GCWGC 2 cut(s) 369, 451
ApoI RAATTY 1 cut(s) 209
ArsI GACNNNNNNTTYG 2 cut(s) 332, 364
AsiGI ACCGGT 1 cut(s) 49
AspS9I GGNCC 1 cut(s) 404
AsuC2I CCSGG 1 cut(s) 221
BalI TGGCCA 1 cut(s) 590
BanI GGYRCC 1 cut(s) 362
BarI GAAGNNNNNNTAC 2 cut(s) 555, 587
BbsI GAAGAC 1 cut(s) 426
BbvI GCAGC 2 cut(s) 381, 463
BccI CCATC 2 cut(s) 32, 580
BceAI ACGGC 2 cut(s) 452, 474
BcnI CCSGG 1 cut(s) 221
BfaI CTAG 2 cut(s) 194, 501
BfmI CTRYAG 1 cut(s) 367
BfuAI ACCTGC 2 cut(s) 345, 374
BglII AGATCT 1 cut(s) 158
BisI GCNGC 3 cut(s) 361, 370, 452
BlsI GCNGC 3 cut(s) 362, 371, 453
Bme1390I CCNGG 1 cut(s) 221
BmgT120I GGNCC 1 cut(s) 404
BmiI GGNNCC 1 cut(s) 364
BmrFI CCNGG 1 cut(s) 221
BmsI GCATC 2 cut(s) 14, 184
BpiI GAAGAC 1 cut(s) 426
BpmI CTGGAG 1 cut(s) 434
BpuMI CCSGG 1 cut(s) 221
Bsa29I ATCGAT 1 cut(s) 261
BsaJI CCNNGG 1 cut(s) 456
BsaWI WCCGGW 1 cut(s) 49
Bsc4I CCNNNNNNNGG 5 cut(s) 31, 77, 322, 401, 474
Bse118I RCCGGY 2 cut(s) 49, 148
Bse1I ACTGG 1 cut(s) 316
BseCI ATCGAT 1 cut(s) 261
BseDI CCNNGG 1 cut(s) 456
BseGI GGATG 3 cut(s) 5, 116, 132
BseLI CCNNNNNNNGG 5 cut(s) 31, 77, 322, 401, 474
BseNI ACTGG 1 cut(s) 316
BseRI GAGGAG 1 cut(s) 10
BseXI GCAGC 2 cut(s) 381, 463
BsgI GTGCAG 1 cut(s) 347
BshFI GGCC 7 cut(s) 17, 152, 224, 390, 406, 467, 590
BshNI GGYRCC 1 cut(s) 362
BshTI ACCGGT 1 cut(s) 49
BshVI ATCGAT 1 cut(s) 261
BsiSI CCGG 3 cut(s) 50, 149, 221
BslFI GGGAC 1 cut(s) 128
BslI CCNNNNNNNGG 5 cut(s) 31, 77, 322, 401, 474
BsmFI GGGAC 1 cut(s) 128
BsnI GGCC 7 cut(s) 17, 152, 224, 390, 406, 467, 590
Bsp143I GATC 5 cut(s) 158, 214, 258, 409, 528
BspACI CCGC 2 cut(s) 10, 360
BspANI GGCC 7 cut(s) 17, 152, 224, 390, 406, 467, 590
BspDI ATCGAT 1 cut(s) 261
BspLI GGNNCC 1 cut(s) 364
BspMAI CTGCAG 1 cut(s) 371
BspMI ACCTGC 2 cut(s) 345, 374
BspT107I GGYRCC 1 cut(s) 362
BsrFI RCCGGY 2 cut(s) 49, 148
BsrI ACTGG 1 cut(s) 316
BssAI RCCGGY 2 cut(s) 49, 148
BssECI CCNNGG 1 cut(s) 456
BssMI GATC 5 cut(s) 158, 214, 258, 409, 528
Bst4CI ACNGT 5 cut(s) 72, 80, 348, 425, 445
BstC8I GCNNGC 1 cut(s) 33
BstDSI CCRYGG 1 cut(s) 456
BstENI CCTNNNNNAGG 1 cut(s) 399
BstF5I GGATG 3 cut(s) 5, 116, 132
BstKTI GATC 5 cut(s) 161, 217, 261, 412, 531
BstMBI GATC 5 cut(s) 158, 214, 258, 409, 528
BstMWI GCNNNNNNNGC 3 cut(s) 360, 366, 369
BstSCI CCNGG 1 cut(s) 219
BstSFI CTRYAG 1 cut(s) 367
BstV1I GCAGC 2 cut(s) 381, 463
BstV2I GAAGAC 1 cut(s) 426
BstX2I RGATCY 1 cut(s) 158
BstXI CCANNNNNNTGG 1 cut(s) 463
BstYI RGATCY 1 cut(s) 158
Bsu15I ATCGAT 1 cut(s) 261
BsuRI GGCC 7 cut(s) 17, 152, 224, 390, 406, 467, 590
BsuTUI ATCGAT 1 cut(s) 261
BtgI CCRYGG 1 cut(s) 456
BtsCI GGATG 3 cut(s) 5, 116, 132
BtsI GCAGTG 1 cut(s) 131
BtsIMutI CAGTG 2 cut(s) 104, 131
BveI ACCTGC 2 cut(s) 345, 374
Cac8I GCNNGC 1 cut(s) 33
CaiI CAGNNNCTG 1 cut(s) 407
Cfr10I RCCGGY 2 cut(s) 49, 148
Cfr13I GGNCC 1 cut(s) 404
ClaI ATCGAT 1 cut(s) 261
Csp6I GTAC 1 cut(s) 189
CspAI ACCGGT 1 cut(s) 49
CviAII CATG 3 cut(s) 205, 322, 383
CviQI GTAC 1 cut(s) 189
DpnI GATC 5 cut(s) 160, 216, 260, 411, 530
DpnII GATC 5 cut(s) 158, 214, 258, 409, 528
EaeI YGGCCR 2 cut(s) 465, 588
Eco57I CTGAAG 2 cut(s) 128, 139
EcoNI CCTNNNNNAGG 1 cut(s) 399
EcoO109I RGGNCCY 1 cut(s) 404
EcoT22I ATGCAT 1 cut(s) 177
FaeI CATG 3 cut(s) 208, 325, 386
FaqI GGGAC 1 cut(s) 128
FatI CATG 3 cut(s) 204, 321, 382
FauI CCCGC 1 cut(s) 17
FblI GTMKAC 1 cut(s) 289
Fnu4HI GCNGC 3 cut(s) 361, 370, 452
FokI GGATG 2 cut(s) 103, 139
Fsp4HI GCNGC 3 cut(s) 361, 370, 452
FspBI CTAG 2 cut(s) 194, 501
GluI GCNGC 3 cut(s) 361, 370, 452
GsuI CTGGAG 1 cut(s) 434
HaeIII GGCC 7 cut(s) 17, 152, 224, 390, 406, 467, 590
HapII CCGG 3 cut(s) 50, 149, 221
Hin1II CATG 3 cut(s) 208, 325, 386
HincII GTYRAC 1 cut(s) 290
HindII GTYRAC 1 cut(s) 290
HinfI GANTC 3 cut(s) 141, 232, 237
HpaII CCGG 3 cut(s) 50, 149, 221
Hpy166II GTNNAC 3 cut(s) 55, 191, 290
Hpy188I TCNGA 6 cut(s) 90, 158, 163, 180, 231, 528
Hpy188III TCNNGA 1 cut(s) 413
Hpy8I GTNNAC 3 cut(s) 55, 191, 290
Hpy99I CGWCG 1 cut(s) 294
HpyAV CCTTC 1 cut(s) 163
HpyCH4III ACNGT 5 cut(s) 72, 80, 348, 425, 445
HpyCH4IV ACGT 2 cut(s) 166, 292
HpyCH4V TGCA 5 cut(s) 136, 175, 244, 328, 369
HpyF10VI GCNNNNNNNGC 3 cut(s) 360, 366, 369
HpySE526I ACGT 2 cut(s) 166, 292
Hsp92II CATG 3 cut(s) 208, 325, 386
Kzo9I GATC 5 cut(s) 158, 214, 258, 409, 528
LmnI GCTCC 1 cut(s) 448
Lsp1109I GCAGC 2 cut(s) 381, 463
LweI GCATC 2 cut(s) 14, 184
MaeI CTAG 2 cut(s) 194, 501
MaeII ACGT 2 cut(s) 166, 292
MaeIII GTNAC 4 cut(s) 376, 425, 471, 496
MalI GATC 5 cut(s) 160, 216, 260, 411, 530
MboI GATC 5 cut(s) 158, 214, 258, 409, 528
MboII GAAGA 4 cut(s) 121, 317, 431, 523
MflI RGATCY 1 cut(s) 158
MlsI TGGCCA 1 cut(s) 590
MluCI AATT 1 cut(s) 209
MluNI TGGCCA 1 cut(s) 590
MlyI GAGTC 2 cut(s) 150, 226
MmeI TCCRAC 1 cut(s) 113
MnlI CCTC 7 cut(s) 28, 31, 285, 383, 401, 409, 585
Mox20I TGGCCA 1 cut(s) 590
Mph1103I ATGCAT 1 cut(s) 177
MscI TGGCCA 1 cut(s) 590
MseI TTAA 1 cut(s) 255
Msp20I TGGCCA 1 cut(s) 590
MspI CCGG 3 cut(s) 50, 149, 221
MspR9I CCNGG 1 cut(s) 221
MwoI GCNNNNNNNGC 3 cut(s) 360, 366, 369
NciI CCSGG 1 cut(s) 221
NdeII GATC 5 cut(s) 158, 214, 258, 409, 528
NlaIII CATG 3 cut(s) 208, 325, 386
NlaIV GGNNCC 1 cut(s) 364
NmuCI GTSAC 2 cut(s) 425, 496
NsiI ATGCAT 1 cut(s) 177
PaqCI CACCTGC 2 cut(s) 345, 374
PfeI GAWTC 1 cut(s) 237
PflFI GACNNNGTC 1 cut(s) 80
PflMI CCANNNNNTGG 1 cut(s) 322
PinAI ACCGGT 1 cut(s) 49
PkrI GCNGC 3 cut(s) 362, 371, 453
PleI GAGTC 2 cut(s) 149, 226
PpsI GAGTC 2 cut(s) 149, 226
PspN4I GGNNCC 1 cut(s) 364
PspPI GGNCC 1 cut(s) 404
PstI CTGCAG 1 cut(s) 371
PstNI CAGNNNCTG 1 cut(s) 407
PsuI RGATCY 1 cut(s) 158
PsyI GACNNNGTC 1 cut(s) 80
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
SalI GTCGAC 1 cut(s) 288
SaqAI TTAA 1 cut(s) 255
SatI GCNGC 3 cut(s) 361, 370, 452
Sau3AI GATC 5 cut(s) 158, 214, 258, 409, 528
Sau96I GGNCC 1 cut(s) 404
SchI GAGTC 2 cut(s) 150, 226
ScrFI CCNGG 1 cut(s) 221
SetI ASST 8 cut(s) 169, 277, 295, 359, 368, 436, 568, 577
SfaNI GCATC 2 cut(s) 14, 184
SfcI CTRYAG 1 cut(s) 367
Sse9I AATT 1 cut(s) 209
SsiI CCGC 2 cut(s) 10, 360
SspMI CTAG 2 cut(s) 194, 501
StyD4I CCNGG 1 cut(s) 219
TaaI ACNGT 5 cut(s) 72, 80, 348, 425, 445
TaiI ACGT 2 cut(s) 169, 295
TaqI TCGA 4 cut(s) 235, 261, 289, 334
TasI AATT 1 cut(s) 209
TatI WGTACW 1 cut(s) 188
TauI GCSGC 1 cut(s) 363
TfiI GAWTC 1 cut(s) 237
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TscAI CASTG 2 cut(s) 111, 138
TseFI GTSAC 2 cut(s) 425, 496
TseI GCWGC 2 cut(s) 369, 451
Tsp45I GTSAC 2 cut(s) 425, 496
TspDTI ATGAA 3 cut(s) 193, 310, 324
TspRI CASTG 2 cut(s) 111, 138
Tth111I GACNNNGTC 1 cut(s) 80
Van91I CCANNNNNTGG 1 cut(s) 322
XagI CCTNNNNNAGG 1 cut(s) 399
XapI RAATTY 1 cut(s) 209
XmiI GTMKAC 1 cut(s) 289
XspI CTAG 2 cut(s) 194, 501
Zsp2I ATGCAT 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.