Rmu_co8326579.1_g000001

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8326579.1
OG0000308
Physical Location & Seq
Reverse (-)
2 .. 773
772 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8326579.1_g000001.1.cds

Sequence Viewer

Length: 478 bp
atgcgcctcattggcagcacgattagcgaactcaaggaaatcgatcgtccgacattcagaaatcgagtcatgcgtattctggttgagatcgactatgtgaaacctttgttgttccgtcgtcaattctgggtagaaggtgaagtccagttcatagtgcagttcaggtatgacaagattttcggttgctgcggcacttgtggattggttactcatgttggcctcccctgctctgggccggaactagttgaagacaatgatacaccgatgggggcagtagcaccacccacagccttagctgtcatgcgggaacaacctgtaccgaaccctcattctactagggtgcctaagaggaagaggagacgcccaattggcagtgtcaacaaactaccatatgggatagcaggaaaagggaagaatgcaaagaaagatggagaatctgacaagacgaagagcaagaagaccaacctgatgccgaggt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

159

Amino Acids

17.92

Weight (kDa)

9.97

Isoelectric Point (pI)

37.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 340
AciI CCGC 2 cut(s) 189, 304
AcyI GRCGYC 1 cut(s) 361
AfaI GTAC 1 cut(s) 318
AfiI CCNNNNNNNGG 2 cut(s) 230, 231
AgsI TTSAA 1 cut(s) 248
AhlI ACTAGT 1 cut(s) 241
AluBI AGCT 1 cut(s) 296
AluI AGCT 1 cut(s) 296
Alw26I GTCTC 1 cut(s) 352
AoxI GGCC 2 cut(s) 217, 233
ApeKI GCWGC 2 cut(s) 15, 186
ArsI GACNNNNNNTTYG 2 cut(s) 161, 193
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 1 cut(s) 233
AsuHPI GGTGA 1 cut(s) 149
BanI GGYRCC 1 cut(s) 340
BbsI GAAGAC 2 cut(s) 255, 464
BbvI GCAGC 2 cut(s) 27, 173
BccI CCATC 2 cut(s) 259, 422
BcoDI GTCTC 1 cut(s) 352
BcuI ACTAGT 1 cut(s) 241
BfaI CTAG 2 cut(s) 242, 336
BglI GCCNNNNNGGC 2 cut(s) 12, 369
BisI GCNGC 3 cut(s) 16, 187, 190
BlsI GCNGC 3 cut(s) 17, 188, 191
BmgT120I GGNCC 1 cut(s) 233
BmiI GGNNCC 1 cut(s) 342
BmsI GCATC 1 cut(s) 459
BpiI GAAGAC 2 cut(s) 255, 464
Bpu10I CCTNAGC 1 cut(s) 292
BpuEI CTTGAG 1 cut(s) 17
Bsa29I ATCGAT 1 cut(s) 42
BsaHI GRCGYC 1 cut(s) 361
BsaJI CCNNGG 1 cut(s) 473
Bsc4I CCNNNNNNNGG 2 cut(s) 230, 231
Bse1I ACTGG 1 cut(s) 145
BseCI ATCGAT 1 cut(s) 42
BseDI CCNNGG 1 cut(s) 473
BseLI CCNNNNNNNGG 2 cut(s) 230, 231
BseNI ACTGG 1 cut(s) 145
BseRI GAGGAG 1 cut(s) 370
BseXI GCAGC 2 cut(s) 27, 173
BsgI GTGCAG 1 cut(s) 176
Bsh1285I CGRYCG 1 cut(s) 46
BshFI GGCC 2 cut(s) 219, 235
BshNI GGYRCC 1 cut(s) 340
BshVI ATCGAT 1 cut(s) 42
BsiEI CGRYCG 1 cut(s) 46
BsiSI CCGG 1 cut(s) 236
BslI CCNNNNNNNGG 2 cut(s) 230, 231
BsmAI GTCTC 1 cut(s) 352
BsmBI CGTCTC 1 cut(s) 352
BsmI GAATGC 1 cut(s) 421
BsnI GGCC 2 cut(s) 219, 235
Bsp143I GATC 2 cut(s) 43, 87
BspACI CCGC 2 cut(s) 189, 304
BspANI GGCC 2 cut(s) 219, 235
BspDI ATCGAT 1 cut(s) 42
BspLI GGNNCC 1 cut(s) 342
BspQI GCTCTTC 1 cut(s) 443
BspT107I GGYRCC 1 cut(s) 340
BsrI ACTGG 1 cut(s) 145
BssECI CCNNGG 1 cut(s) 473
BssMI GATC 2 cut(s) 43, 87
BssNI GRCGYC 1 cut(s) 361
Bst6I CTCTTC 2 cut(s) 347, 443
BstACI GRCGYC 1 cut(s) 361
BstDEI CTNAG 2 cut(s) 292, 345
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 2 cut(s) 46, 90
BstMAI GTCTC 1 cut(s) 352
BstMBI GATC 2 cut(s) 43, 87
BstMCI CGRYCG 1 cut(s) 46
BstMWI GCNNNNNNNGC 4 cut(s) 12, 24, 225, 369
BstV1I GCAGC 2 cut(s) 27, 173
BstV2I GAAGAC 2 cut(s) 255, 464
Bsu15I ATCGAT 1 cut(s) 42
BsuRI GGCC 2 cut(s) 219, 235
BsuTUI ATCGAT 1 cut(s) 42
BtsI GCAGTG 1 cut(s) 379
BtsIMutI CAGTG 1 cut(s) 379
CfoI GCGC 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 233
ClaI ATCGAT 1 cut(s) 42
CseI GACGC 1 cut(s) 369
Csp6I GTAC 1 cut(s) 317
CviAII CATG 3 cut(s) 70, 212, 301
CviJI RGCY 4 cut(s) 219, 235, 290, 296
CviKI_1 RGCY 4 cut(s) 219, 235, 290, 296
CviQI GTAC 1 cut(s) 317
DdeI CTNAG 2 cut(s) 292, 345
DpnI GATC 2 cut(s) 45, 89
DpnII GATC 2 cut(s) 43, 87
Eam1104I CTCTTC 2 cut(s) 347, 443
EarI CTCTTC 2 cut(s) 347, 443
Esp3I CGTCTC 1 cut(s) 352
FaeI CATG 3 cut(s) 73, 215, 304
FaiI YATR 8 cut(s) 71, 96, 152, 168, 213, 302, 391, 393
FatI CATG 3 cut(s) 69, 211, 300
FauI CCCGC 1 cut(s) 297
FauNDI CATATG 1 cut(s) 391
Fnu4HI GCNGC 3 cut(s) 16, 187, 190
Fsp4HI GCNGC 3 cut(s) 16, 187, 190
FspBI CTAG 2 cut(s) 242, 336
GlaI GCGC 1 cut(s) 5
GluI GCNGC 3 cut(s) 16, 187, 190
HaeIII GGCC 2 cut(s) 219, 235
HapII CCGG 1 cut(s) 236
HgaI GACGC 1 cut(s) 369
HhaI GCGC 1 cut(s) 6
Hin1I GRCGYC 1 cut(s) 361
Hin1II CATG 3 cut(s) 73, 215, 304
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HincII GTYRAC 1 cut(s) 379
HindII GTYRAC 1 cut(s) 379
HinfI GANTC 2 cut(s) 66, 434
HpaII CCGG 1 cut(s) 236
HphI GGTGA 1 cut(s) 149
Hpy166II GTNNAC 1 cut(s) 379
Hpy188I TCNGA 3 cut(s) 51, 59, 439
Hpy8I GTNNAC 1 cut(s) 379
Hpy99I CGWCG 1 cut(s) 120
HpyAV CCTTC 1 cut(s) 128
HpyCH4V TGCA 2 cut(s) 157, 419
HpyF10VI GCNNNNNNNGC 4 cut(s) 12, 24, 225, 369
HpyF3I CTNAG 2 cut(s) 292, 345
Hsp92I GRCGYC 1 cut(s) 361
Hsp92II CATG 3 cut(s) 73, 215, 304
HspAI GCGC 1 cut(s) 4
Kzo9I GATC 2 cut(s) 43, 87
LguI GCTCTTC 1 cut(s) 443
LpnPI CCDG 9 cut(s) 65, 112, 148, 158, 216, 238, 249, 327, 387
Lsp1109I GCAGC 2 cut(s) 27, 173
LweI GCATC 1 cut(s) 459
MaeI CTAG 2 cut(s) 242, 336
MaeIII GTNAC 1 cut(s) 205
MalI GATC 2 cut(s) 45, 89
MboI GATC 2 cut(s) 43, 87
MboII GAAGA 5 cut(s) 260, 364, 424, 460, 469
MfeI CAATTG 1 cut(s) 366
MluCI AATT 2 cut(s) 122, 366
MlyI GAGTC 1 cut(s) 75
MmeI TCCRAC 1 cut(s) 74
MnlI CCTC 6 cut(s) 17, 230, 336, 342, 348, 468
MspI CCGG 1 cut(s) 236
MunI CAATTG 1 cut(s) 366
Mva1269I GAATGC 1 cut(s) 421
MwoI GCNNNNNNNGC 4 cut(s) 12, 24, 225, 369
NdeI CATATG 1 cut(s) 391
NdeII GATC 2 cut(s) 43, 87
NlaIII CATG 3 cut(s) 73, 215, 304
NlaIV GGNNCC 1 cut(s) 342
PciSI GCTCTTC 1 cut(s) 443
PcsI WCGNNNNNNNCGW 1 cut(s) 70
PctI GAATGC 1 cut(s) 421
PfeI GAWTC 1 cut(s) 434
PkrI GCNGC 3 cut(s) 17, 188, 191
Ple19I CGATCG 1 cut(s) 46
PleI GAGTC 1 cut(s) 74
PpsI GAGTC 1 cut(s) 74
PspN4I GGNNCC 1 cut(s) 342
PspPI GGNCC 1 cut(s) 233
PsrI GAACNNNNNNTAC 2 cut(s) 300, 332
PvuI CGATCG 1 cut(s) 46
RsaI GTAC 1 cut(s) 318
RsaNI GTAC 1 cut(s) 317
SapI GCTCTTC 1 cut(s) 443
SatI GCNGC 3 cut(s) 16, 187, 190
Sau3AI GATC 2 cut(s) 43, 87
Sau96I GGNCC 1 cut(s) 233
SchI GAGTC 1 cut(s) 75
SetI ASST 6 cut(s) 106, 139, 167, 298, 316, 468
SfaNI GCATC 1 cut(s) 459
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
SpeI ACTAGT 1 cut(s) 241
Sse9I AATT 2 cut(s) 122, 366
SsiI CCGC 2 cut(s) 189, 304
SspMI CTAG 2 cut(s) 242, 336
TaqI TCGA 3 cut(s) 42, 64, 90
TasI AATT 2 cut(s) 122, 366
TauI GCSGC 1 cut(s) 192
TfiI GAWTC 1 cut(s) 434
TscAI CASTG 1 cut(s) 379
TseI GCWGC 2 cut(s) 15, 186
TspDTI ATGAA 1 cut(s) 139
TspGWI ACGGA 1 cut(s) 104
TspRI CASTG 1 cut(s) 379
XspI CTAG 2 cut(s) 242, 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.