Rmu_sc0040009.1_g000002

negative regulation of oxidative stress-induced neuron death

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0040009.1
OG0000308
Physical Location & Seq
Reverse (-)
245 .. 631
387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0040009.1_g000002.1.cds

Sequence Viewer

Length: 387 bp
atgtggatactagaagccgcaaaactctgctctcctctagggttagggttttttgtgactgtgagaaactttcaacatagcatggcctccattgatgcaatggcagccaggcttgcctcttcccttgctattgcggaagggaaacgacctgtggatcttcgtccgtccaagggacttcttcagccggaagtatttatgcttggaaagctcctaactgttagggagtatacgcaccgctcttttctgggcatgtttaggtcagcgtggaggatcaatggcacgatgcgtgtcgaagaaactggggaaaatgaccatgtcctgatattgttttcagatccgatggatcgaactagggtttggaggggaggcccttggggatttaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

128

Amino Acids

14.48

Weight (kDa)

9.84

Isoelectric Point (pI)

33.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 237
AccI GTMKAC 1 cut(s) 227
AciI CCGC 3 cut(s) 18, 134, 235
AclWI GGATC 4 cut(s) 162, 278, 329, 351
AcuI CTGAAG 1 cut(s) 164
AfiI CCNNNNNNNGG 1 cut(s) 170
AgsI TTSAA 1 cut(s) 74
AjnI CCWGG 1 cut(s) 107
AjuI GAANNNNNNNTTGG 2 cut(s) 340, 372
AluBI AGCT 1 cut(s) 208
AluI AGCT 1 cut(s) 208
AlwI GGATC 4 cut(s) 162, 278, 329, 351
AoxI GGCC 2 cut(s) 84, 367
ApeKI GCWGC 1 cut(s) 104
AspS9I GGNCC 1 cut(s) 368
BbvI GCAGC 1 cut(s) 116
BccI CCATC 1 cut(s) 334
BciT130I CCWGG 1 cut(s) 109
BfaI CTAG 3 cut(s) 11, 38, 351
BisI GCNGC 2 cut(s) 18, 105
BlsI GCNGC 2 cut(s) 19, 106
Bme1390I CCNGG 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 368
BmrFI CCNGG 1 cut(s) 109
BmrI ACTGGG 1 cut(s) 309
BmsI GCATC 2 cut(s) 85, 273
BmuI ACTGGG 1 cut(s) 309
BsaJI CCNNGG 2 cut(s) 168, 371
Bsc4I CCNNNNNNNGG 1 cut(s) 170
Bse1I ACTGG 1 cut(s) 304
Bse3DI GCAATG 1 cut(s) 105
BseBI CCWGG 1 cut(s) 109
BseDI CCNNGG 2 cut(s) 168, 371
BseLI CCNNNNNNNGG 1 cut(s) 170
BseMI GCAATG 1 cut(s) 105
BseNI ACTGG 1 cut(s) 304
BseRI GAGGAG 1 cut(s) 24
BseXI GCAGC 1 cut(s) 116
BshFI GGCC 2 cut(s) 86, 369
BsiSI CCGG 1 cut(s) 185
BslFI GGGAC 1 cut(s) 186
BslI CCNNNNNNNGG 1 cut(s) 170
BsmFI GGGAC 1 cut(s) 186
BsnI GGCC 2 cut(s) 86, 369
Bsp143I GATC 4 cut(s) 154, 270, 334, 343
BspACI CCGC 3 cut(s) 18, 134, 235
BspANI GGCC 2 cut(s) 86, 369
BspPI GGATC 4 cut(s) 162, 278, 329, 351
BsrBI CCGCTC 1 cut(s) 237
BsrDI GCAATG 1 cut(s) 105
BsrI ACTGG 1 cut(s) 304
BssECI CCNNGG 2 cut(s) 168, 371
BssMI GATC 4 cut(s) 154, 270, 334, 343
BssNAI GTATAC 1 cut(s) 228
BssT1I CCWWGG 2 cut(s) 168, 371
Bst1107I GTATAC 1 cut(s) 228
Bst2UI CCWGG 1 cut(s) 109
Bst4CI ACNGT 2 cut(s) 61, 217
Bst6I CTCTTC 1 cut(s) 124
BstC8I GCNNGC 1 cut(s) 114
BstKTI GATC 4 cut(s) 157, 273, 337, 346
BstMBI GATC 4 cut(s) 154, 270, 334, 343
BstMWI GCNNNNNNNGC 3 cut(s) 104, 113, 205
BstNI CCWGG 1 cut(s) 109
BstNSI RCATGY 1 cut(s) 253
BstSCI CCNGG 1 cut(s) 107
BstV1I GCAGC 1 cut(s) 116
BstX2I RGATCY 2 cut(s) 154, 334
BstYI RGATCY 2 cut(s) 154, 334
BstZ17I GTATAC 1 cut(s) 228
BsuRI GGCC 2 cut(s) 86, 369
Cac8I GCNNGC 1 cut(s) 114
Cfr13I GGNCC 1 cut(s) 368
CviAII CATG 3 cut(s) 82, 250, 314
CviJI RGCY 7 cut(s) 17, 86, 107, 112, 184, 208, 369
CviKI_1 RGCY 7 cut(s) 17, 86, 107, 112, 184, 208, 369
DpnI GATC 4 cut(s) 156, 272, 336, 345
DpnII GATC 4 cut(s) 154, 270, 334, 343
Eam1104I CTCTTC 1 cut(s) 124
EarI CTCTTC 1 cut(s) 124
Eco130I CCWWGG 2 cut(s) 168, 371
Eco57I CTGAAG 1 cut(s) 164
EcoO109I RGGNCCY 1 cut(s) 368
EcoRII CCWGG 1 cut(s) 107
EcoT14I CCWWGG 2 cut(s) 168, 371
ErhI CCWWGG 2 cut(s) 168, 371
FaeI CATG 3 cut(s) 85, 253, 317
FaiI YATR 6 cut(s) 78, 83, 197, 228, 251, 315
FaqI GGGAC 1 cut(s) 186
FatI CATG 3 cut(s) 81, 249, 313
FblI GTMKAC 1 cut(s) 227
Fnu4HI GCNGC 2 cut(s) 18, 105
Fsp4HI GCNGC 2 cut(s) 18, 105
FspBI CTAG 3 cut(s) 11, 38, 351
GluI GCNGC 2 cut(s) 18, 105
HaeIII GGCC 2 cut(s) 86, 369
HapII CCGG 1 cut(s) 185
Hin1II CATG 3 cut(s) 85, 253, 317
HpaII CCGG 1 cut(s) 185
Hpy166II GTNNAC 1 cut(s) 228
Hpy188I TCNGA 2 cut(s) 334, 339
Hpy188III TCNNGA 1 cut(s) 319
Hpy8I GTNNAC 1 cut(s) 228
HpyAV CCTTC 1 cut(s) 131
HpyCH4III ACNGT 2 cut(s) 61, 217
HpyCH4V TGCA 1 cut(s) 98
HpyF10VI GCNNNNNNNGC 3 cut(s) 104, 113, 205
Hsp92II CATG 3 cut(s) 85, 253, 317
Kzo9I GATC 4 cut(s) 154, 270, 334, 343
LmnI GCTCC 1 cut(s) 213
LpnPI CCDG 7 cut(s) 94, 121, 162, 198, 230, 285, 332
Lsp1109I GCAGC 1 cut(s) 116
LweI GCATC 2 cut(s) 85, 273
MaeI CTAG 3 cut(s) 11, 38, 351
MaeIII GTNAC 1 cut(s) 55
MalI GATC 4 cut(s) 156, 272, 336, 345
MbiI CCGCTC 1 cut(s) 237
MboI GATC 4 cut(s) 154, 270, 334, 343
MboII GAAGA 4 cut(s) 111, 149, 170, 305
MflI RGATCY 2 cut(s) 154, 334
MluCI AATT 1 cut(s) 382
MnlI CCTC 6 cut(s) 45, 97, 127, 261, 354, 359
MseI TTAA 1 cut(s) 381
MspI CCGG 1 cut(s) 185
MspR9I CCNGG 1 cut(s) 109
MvaI CCWGG 1 cut(s) 109
MwoI GCNNNNNNNGC 3 cut(s) 104, 113, 205
NdeII GATC 4 cut(s) 154, 270, 334, 343
NlaIII CATG 3 cut(s) 85, 253, 317
NmuCI GTSAC 1 cut(s) 55
NspI RCATGY 1 cut(s) 253
PflFI GACNNNGTC 1 cut(s) 314
PkrI GCNGC 2 cut(s) 19, 106
Psp6I CCWGG 1 cut(s) 107
PspGI CCWGG 1 cut(s) 107
PspPI GGNCC 1 cut(s) 368
PsuI RGATCY 2 cut(s) 154, 334
PsyI GACNNNGTC 1 cut(s) 314
SaqAI TTAA 1 cut(s) 381
SatI GCNGC 2 cut(s) 18, 105
Sau3AI GATC 4 cut(s) 154, 270, 334, 343
Sau96I GGNCC 1 cut(s) 368
ScrFI CCNGG 1 cut(s) 109
SetI ASST 3 cut(s) 151, 210, 260
SfaNI GCATC 2 cut(s) 85, 273
Sse9I AATT 1 cut(s) 382
SsiI CCGC 3 cut(s) 18, 134, 235
SspMI CTAG 3 cut(s) 11, 38, 351
StyD4I CCNGG 1 cut(s) 107
StyI CCWWGG 2 cut(s) 168, 371
TaaI ACNGT 2 cut(s) 61, 217
TaqI TCGA 2 cut(s) 291, 346
TasI AATT 1 cut(s) 382
TauI GCSGC 1 cut(s) 20
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 1 cut(s) 104
Tsp45I GTSAC 1 cut(s) 55
TspGWI ACGGA 1 cut(s) 153
Tth111I GACNNNGTC 1 cut(s) 314
XceI RCATGY 1 cut(s) 253
XcmI CCANNNNNNNNNTGG 1 cut(s) 97
XmiI GTMKAC 1 cut(s) 227
XspI CTAG 3 cut(s) 11, 38, 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.