Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007390.1

Orthogroup ID

OG0000308

Physical Location & Seq

Genomic Coordinates Reverse (-)

22617 .. 23003

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007390.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

atggcaattgatgcaatggcagcccgcttggcctcctccctagcgctggctgatggcaagcaaccggtggatttgcgtccatcaaaaggattgagacaacctgaagcattcatggtaggaaagctactcacggcacgggaatattctcgtcgatctttccttggcttgtttcgatctgcatggagagtcaatggcagattgaatgttgaagaactcggagaagatgatagggtcttgttcacttttacagacccttcggatgtgaatagggtttggaaaggaggaccatggggatataaccgggctcctatagccttagcaccgtacgacggtgtcagcccggcaagggagatccctgtttcgtcgacgtttcagggtggaagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

128

Amino Acids

14.11

Weight (kDa)

9.85

Isoelectric Point (pI)

55.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000308)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24891 FvH4_4g09031
rosa_multiflora	Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii	Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa	Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha	Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	365
AciI	CCGC	1 cut(s)	25
AclWI	GGATC	1 cut(s)	346
AcuI	CTGAAG	1 cut(s)	123
AfaI	GTAC	1 cut(s)	326
AfeI	AGCGCT	1 cut(s)	45
AfiI	CCNNNNNNNGG	4 cut(s)	46, 86, 329, 346
AgeI	ACCGGT	1 cut(s)	64
AgsI	TTSAA	2 cut(s)	202, 209
AluBI	AGCT	1 cut(s)	124
AluI	AGCT	1 cut(s)	124
Alw26I	GTCTC	1 cut(s)	88
AlwI	GGATC	1 cut(s)	346
Aor51HI	AGCGCT	1 cut(s)	45
AoxI	GGCC	1 cut(s)	30
ApeKI	GCWGC	1 cut(s)	20
AsiGI	ACCGGT	1 cut(s)	64
AspLEI	GCGC	1 cut(s)	46
AspS9I	GGNCC	1 cut(s)	284
AsuC2I	CCSGG	2 cut(s)	302, 341
AvaII	GGWCC	1 cut(s)	284
BanII	GRGCYC	1 cut(s)	307
BbvI	GCAGC	1 cut(s)	32
BccI	CCATC	2 cut(s)	47, 88
BceAI	ACGGC	1 cut(s)	147
BcnI	CCSGG	2 cut(s)	302, 341
BcoDI	GTCTC	1 cut(s)	88
BfaI	CTAG	1 cut(s)	41
BfmI	CTRYAG	1 cut(s)	309
BfoI	RGCGCY	1 cut(s)	47
BglI	GCCNNNNNGGC	1 cut(s)	29
BisI	GCNGC	1 cut(s)	21
BlsI	GCNGC	1 cut(s)	22
Bme1390I	CCNGG	2 cut(s)	302, 341
Bme18I	GGWCC	1 cut(s)	284
BmgT120I	GGNCC	1 cut(s)	284
BmiI	GGNNCC	1 cut(s)	306
BmrFI	CCNGG	2 cut(s)	302, 341
Bpu10I	CCTNAGC	1 cut(s)	316
BpuMI	CCSGG	2 cut(s)	302, 341
BsaJI	CCNNGG	2 cut(s)	160, 287
BsaWI	WCCGGW	1 cut(s)	64
Bsc4I	CCNNNNNNNGG	4 cut(s)	46, 86, 329, 346
Bse118I	RCCGGY	1 cut(s)	64
Bse3DI	GCAATG	1 cut(s)	21
BseDI	CCNNGG	2 cut(s)	160, 287
BseGI	GGATG	1 cut(s)	265
BseLI	CCNNNNNNNGG	4 cut(s)	46, 86, 329, 346
BseMI	GCAATG	1 cut(s)	21
BseRI	GAGGAG	1 cut(s)	25
BseXI	GCAGC	1 cut(s)	32
BshFI	GGCC	1 cut(s)	32
BshTI	ACCGGT	1 cut(s)	64
BsiSI	CCGG	3 cut(s)	65, 301, 341
BsiWI	CGTACG	1 cut(s)	324
BslI	CCNNNNNNNGG	4 cut(s)	46, 86, 329, 346
BsmAI	GTCTC	1 cut(s)	88
BsmI	GAATGC	1 cut(s)	107
BsnI	GGCC	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	307
Bsp143I	GATC	3 cut(s)	152, 173, 351
Bsp19I	CCATGG	1 cut(s)	287
BspACI	CCGC	1 cut(s)	25
BspANI	GGCC	1 cut(s)	32
BspLI	GGNNCC	1 cut(s)	306
BspPI	GGATC	1 cut(s)	346
BsrDI	GCAATG	1 cut(s)	21
BsrFI	RCCGGY	1 cut(s)	64
BssAI	RCCGGY	1 cut(s)	64
BssECI	CCNNGG	2 cut(s)	160, 287
BssMI	GATC	3 cut(s)	152, 173, 351
BssT1I	CCWWGG	2 cut(s)	160, 287
Bst4CI	ACNGT	2 cut(s)	324, 332
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstC8I	GCNNGC	3 cut(s)	25, 48, 59
BstDEI	CTNAG	1 cut(s)	316
BstDSI	CCRYGG	1 cut(s)	287
BstF5I	GGATG	1 cut(s)	265
BstH2I	RGCGCY	1 cut(s)	47
BstHHI	GCGC	1 cut(s)	46
BstKTI	GATC	3 cut(s)	155, 176, 354
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	3 cut(s)	152, 173, 351
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 20, 29, 311
BstSCI	CCNGG	2 cut(s)	300, 339
BstSFI	CTRYAG	1 cut(s)	309
BstV1I	GCAGC	1 cut(s)	32
BstX2I	RGATCY	1 cut(s)	351
BstYI	RGATCY	1 cut(s)	351
BsuRI	GGCC	1 cut(s)	32
BtgI	CCRYGG	1 cut(s)	287
BtsCI	GGATG	1 cut(s)	265
Cac8I	GCNNGC	3 cut(s)	25, 48, 59
CfoI	GCGC	1 cut(s)	46
Cfr10I	RCCGGY	1 cut(s)	64
Cfr13I	GGNCC	1 cut(s)	284
CseI	GACGC	1 cut(s)	65
Csp6I	GTAC	1 cut(s)	325
CspAI	ACCGGT	1 cut(s)	64
CviAII	CATG	3 cut(s)	112, 180, 288
CviJI	RGCY	8 cut(s)	23, 32, 50, 124, 165, 305, 314, 339
CviKI_1	RGCY	8 cut(s)	23, 32, 50, 124, 165, 305, 314, 339
CviQI	GTAC	1 cut(s)	325
DdeI	CTNAG	1 cut(s)	316
DpnI	GATC	3 cut(s)	154, 175, 353
DpnII	GATC	3 cut(s)	152, 173, 351
Eco130I	CCWWGG	2 cut(s)	160, 287
Eco24I	GRGCYC	1 cut(s)	307
Eco47I	GGWCC	1 cut(s)	284
Eco47III	AGCGCT	1 cut(s)	45
Eco57I	CTGAAG	1 cut(s)	123
EcoT14I	CCWWGG	2 cut(s)	160, 287
EcoT38I	GRGCYC	1 cut(s)	307
ErhI	CCWWGG	2 cut(s)	160, 287
FaeI	CATG	3 cut(s)	115, 183, 291
FaiI	YATR	5 cut(s)	113, 181, 289, 297, 311
FatI	CATG	3 cut(s)	111, 179, 287
FauI	CCCGC	1 cut(s)	32
FblI	GTMKAC	1 cut(s)	365
Fnu4HI	GCNGC	1 cut(s)	21
FokI	GGATG	1 cut(s)	272
FriOI	GRGCYC	1 cut(s)	307
Fsp4HI	GCNGC	1 cut(s)	21
FspBI	CTAG	1 cut(s)	41
GlaI	GCGC	1 cut(s)	45
GluI	GCNGC	1 cut(s)	21
HaeII	RGCGCY	1 cut(s)	47
HaeIII	GGCC	1 cut(s)	32
HapII	CCGG	3 cut(s)	65, 301, 341
HgaI	GACGC	1 cut(s)	65
HhaI	GCGC	1 cut(s)	46
Hin1II	CATG	3 cut(s)	115, 183, 291
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HincII	GTYRAC	1 cut(s)	366
HindII	GTYRAC	1 cut(s)	366
HinfI	GANTC	1 cut(s)	186
HpaII	CCGG	3 cut(s)	65, 301, 341
Hpy166II	GTNNAC	2 cut(s)	240, 366
Hpy188I	TCNGA	2 cut(s)	218, 259
Hpy8I	GTNNAC	2 cut(s)	240, 366
Hpy99I	CGWCG	4 cut(s)	153, 332, 367, 370
HpyAV	CCTTC	1 cut(s)	264
HpyCH4III	ACNGT	2 cut(s)	324, 332
HpyCH4IV	ACGT	1 cut(s)	368
HpyCH4V	TGCA	2 cut(s)	14, 179
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 20, 29, 311
HpyF3I	CTNAG	1 cut(s)	316
HpySE526I	ACGT	1 cut(s)	368
Hsp92II	CATG	3 cut(s)	115, 183, 291
HspAI	GCGC	1 cut(s)	44
Kzo9I	GATC	3 cut(s)	152, 173, 351
LmnI	GCTCC	1 cut(s)	310
LpnPI	CCDG	7 cut(s)	32, 78, 114, 314, 354, 359, 369
Lsp1109I	GCAGC	1 cut(s)	32
MaeI	CTAG	1 cut(s)	41
MaeII	ACGT	1 cut(s)	368
MalI	GATC	3 cut(s)	154, 175, 353
MboI	GATC	3 cut(s)	152, 173, 351
MboII	GAAGA	2 cut(s)	221, 233
MfeI	CAATTG	1 cut(s)	6
MflI	RGATCY	1 cut(s)	351
MhlI	GDGCHC	1 cut(s)	307
MluCI	AATT	1 cut(s)	6
MlyI	GAGTC	1 cut(s)	195
MnlI	CCTC	3 cut(s)	43, 46, 275
MspI	CCGG	3 cut(s)	65, 301, 341
MspR9I	CCNGG	2 cut(s)	302, 341
MunI	CAATTG	1 cut(s)	6
Mva1269I	GAATGC	1 cut(s)	107
MwoI	GCNNNNNNNGC	4 cut(s)	11, 20, 29, 311
NciI	CCSGG	2 cut(s)	302, 341
NcoI	CCATGG	1 cut(s)	287
NdeII	GATC	3 cut(s)	152, 173, 351
NlaIII	CATG	3 cut(s)	115, 183, 291
NlaIV	GGNNCC	1 cut(s)	306
PctI	GAATGC	1 cut(s)	107
Pfl23II	CGTACG	1 cut(s)	324
PflFI	GACNNNGTC	1 cut(s)	332
PinAI	ACCGGT	1 cut(s)	64
PkrI	GCNGC	1 cut(s)	22
PleI	GAGTC	1 cut(s)	194
PpsI	GAGTC	1 cut(s)	194
PspLI	CGTACG	1 cut(s)	324
PspN4I	GGNNCC	1 cut(s)	306
PspPI	GGNCC	1 cut(s)	284
PsuI	RGATCY	1 cut(s)	351
PsyI	GACNNNGTC	1 cut(s)	332
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
SalI	GTCGAC	1 cut(s)	364
SatI	GCNGC	1 cut(s)	21
Sau3AI	GATC	3 cut(s)	152, 173, 351
Sau96I	GGNCC	1 cut(s)	284
SchI	GAGTC	1 cut(s)	195
ScrFI	CCNGG	2 cut(s)	302, 341
SduI	GDGCHC	1 cut(s)	307
SetI	ASST	3 cut(s)	103, 126, 371
SfcI	CTRYAG	1 cut(s)	309
SgrDI	CGTCGACG	1 cut(s)	364
SinI	GGWCC	1 cut(s)	284
Sse9I	AATT	1 cut(s)	6
SsiI	CCGC	1 cut(s)	25
SspI	AATATT	1 cut(s)	143
SspMI	CTAG	1 cut(s)	41
StyD4I	CCNGG	2 cut(s)	300, 339
StyI	CCWWGG	2 cut(s)	160, 287
TaaI	ACNGT	2 cut(s)	324, 332
TaiI	ACGT	1 cut(s)	371
TaqI	TCGA	3 cut(s)	151, 172, 365
TasI	AATT	1 cut(s)	6
TseI	GCWGC	1 cut(s)	20
TspDTI	ATGAA	1 cut(s)	100
Tth111I	GACNNNGTC	1 cut(s)	332
VpaK11BI	GGWCC	1 cut(s)	284
XmiI	GTMKAC	1 cut(s)	365
XspI	CTAG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.