Rmu_ssc0000451.1_g000014

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000451.1
OG0000308
Physical Location & Seq
Reverse (-)
53520 .. 54211
692 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000451.1_g000014.1.cds

Sequence Viewer

Length: 600 bp
atgctcactgcgcgagaatattccggttgctcttttcttggcatgttccaatttgcatggtggatcaatggcagactaagtgttgaagagattggagaagatgacagggttctgttcacattcacatacccttctaatgtggatagggtttggaaaggaggactatggggatacaacagggcttctatagccgtagcgcagtacgacagtgtcaatccggcaagggagataccactgaagaaatcatcctattggatgacattgcaagaagtaccaccggcgttcagagttgagatcgactatgcaaagcctctcttgtttcgttgccgtttctgggtggaagatgaagttcaattcatggtgcaatttcggtacgacaagttgtttggccggtgcgacacttgtggcctagttactcatgttggccttccttgctcagggccggatttggaggaagatagtgatgcaccagttggagcggtgaagccacccacgtctttggcagtactacggggacatgaaaaccttaatggcaatagggtggtggtgaacgatcaaaccttgatcttcaaggctcagatacctaatagcataccataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

199

Amino Acids

22.62

Weight (kDa)

5.26

Isoelectric Point (pI)

27.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 479
AccII CGCG 1 cut(s) 13
AciI CCGC 1 cut(s) 479
AclWI GGATC 1 cut(s) 71
AcoI YGGCCR 1 cut(s) 388
AcuI CTGAAG 1 cut(s) 257
AfaI GTAC 4 cut(s) 203, 273, 374, 507
AfiI CCNNNNNNNGG 2 cut(s) 334, 437
AgsI TTSAA 3 cut(s) 86, 353, 571
AjiI CACGTC 1 cut(s) 495
AlwI GGATC 1 cut(s) 71
AoxI GGCC 4 cut(s) 388, 406, 424, 440
ArsI GACNNNNNNTTYG 2 cut(s) 368, 400
AspLEI GCGC 2 cut(s) 13, 199
AspS9I GGNCC 1 cut(s) 440
AsuHPI GGTGA 2 cut(s) 493, 559
BceAI ACGGC 2 cut(s) 176, 312
BciVI GTATCC 1 cut(s) 164
BfaI CTAG 1 cut(s) 410
BfmI CTRYAG 1 cut(s) 186
BfuI GTATCC 1 cut(s) 164
BmcAI AGTACT 1 cut(s) 507
BmgBI CACGTC 1 cut(s) 495
BmgT120I GGNCC 1 cut(s) 440
BmsI GCATC 1 cut(s) 454
Bpu10I CCTNAGC 1 cut(s) 436
BsaWI WCCGGW 1 cut(s) 23
Bsc4I CCNNNNNNNGG 2 cut(s) 334, 437
Bse118I RCCGGY 2 cut(s) 277, 390
Bse1I ACTGG 1 cut(s) 470
Bse3DI GCAATG 1 cut(s) 260
BseGI GGATG 2 cut(s) 245, 261
BseLI CCNNNNNNNGG 2 cut(s) 334, 437
BseMI GCAATG 1 cut(s) 260
BseMII CTCAG 2 cut(s) 450, 590
BseNI ACTGG 1 cut(s) 470
Bsh1236I CGCG 1 cut(s) 13
BshFI GGCC 4 cut(s) 390, 408, 426, 442
BsiSI CCGG 5 cut(s) 24, 218, 278, 391, 443
BslFI GGGAC 1 cut(s) 528
BslI CCNNNNNNNGG 2 cut(s) 334, 437
BsmFI GGGAC 1 cut(s) 528
BsnI GGCC 4 cut(s) 390, 408, 426, 442
Bsp143I GATC 4 cut(s) 63, 294, 553, 564
BspACI CCGC 1 cut(s) 479
BspANI GGCC 4 cut(s) 390, 408, 426, 442
BspCNI CTCAG 2 cut(s) 449, 589
BspFNI CGCG 1 cut(s) 13
BspPI GGATC 1 cut(s) 71
BsrBI CCGCTC 1 cut(s) 479
BsrDI GCAATG 1 cut(s) 260
BsrFI RCCGGY 2 cut(s) 277, 390
BsrI ACTGG 1 cut(s) 470
BssAI RCCGGY 2 cut(s) 277, 390
BssMI GATC 4 cut(s) 63, 294, 553, 564
Bst4CI ACNGT 1 cut(s) 209
Bst6I CTCTTC 1 cut(s) 81
BstDEI CTNAG 3 cut(s) 77, 436, 576
BstENI CCTNNNNNAGG 1 cut(s) 435
BstF5I GGATG 2 cut(s) 245, 261
BstFNI CGCG 1 cut(s) 13
BstHHI GCGC 2 cut(s) 13, 199
BstKTI GATC 4 cut(s) 66, 297, 556, 567
BstMBI GATC 4 cut(s) 63, 294, 553, 564
BstMWI GCNNNNNNNGC 3 cut(s) 10, 188, 432
BstNSI RCATGY 1 cut(s) 46
BstSFI CTRYAG 1 cut(s) 186
BstUI CGCG 1 cut(s) 13
BstXI CCANNNNNNTGG 1 cut(s) 499
BsuI GTATCC 1 cut(s) 164
BsuRI GGCC 4 cut(s) 390, 408, 426, 442
BtrI CACGTC 1 cut(s) 495
BtsCI GGATG 2 cut(s) 245, 261
BtsI GCAGTG 1 cut(s) 6
BtsIMutI CAGTG 3 cut(s) 6, 214, 233
CfoI GCGC 2 cut(s) 13, 199
Cfr10I RCCGGY 2 cut(s) 277, 390
Cfr13I GGNCC 1 cut(s) 440
Csp6I GTAC 4 cut(s) 202, 272, 373, 506
CviAII CATG 5 cut(s) 43, 57, 358, 419, 518
CviJI RGCY 9 cut(s) 182, 191, 310, 390, 408, 426, 442, 487, 575
CviKI_1 RGCY 9 cut(s) 182, 191, 310, 390, 408, 426, 442, 487, 575
CviQI GTAC 4 cut(s) 202, 272, 373, 506
DdeI CTNAG 3 cut(s) 77, 436, 576
DpnI GATC 4 cut(s) 65, 296, 555, 566
DpnII GATC 4 cut(s) 63, 294, 553, 564
EaeI YGGCCR 1 cut(s) 388
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
Eco57I CTGAAG 1 cut(s) 257
EcoNI CCTNNNNNAGG 1 cut(s) 435
FaeI CATG 5 cut(s) 46, 60, 361, 422, 521
FalI AAGNNNNNCTT 2 cut(s) 299, 331
FaqI GGGAC 1 cut(s) 528
FatI CATG 5 cut(s) 42, 56, 357, 418, 517
FokI GGATG 2 cut(s) 232, 268
FspBI CTAG 1 cut(s) 410
GlaI GCGC 2 cut(s) 12, 198
HaeIII GGCC 4 cut(s) 390, 408, 426, 442
HapII CCGG 5 cut(s) 24, 218, 278, 391, 443
HhaI GCGC 2 cut(s) 13, 199
Hin1II CATG 5 cut(s) 46, 60, 361, 422, 521
Hin6I GCGC 2 cut(s) 11, 197
HinP1I GCGC 2 cut(s) 11, 197
HpaII CCGG 5 cut(s) 24, 218, 278, 391, 443
HphI GGTGA 2 cut(s) 493, 559
Hpy166II GTNNAC 2 cut(s) 117, 550
Hpy188I TCNGA 2 cut(s) 287, 579
Hpy8I GTNNAC 2 cut(s) 117, 550
HpyAV CCTTC 2 cut(s) 141, 437
HpyCH4III ACNGT 1 cut(s) 209
HpyCH4IV ACGT 1 cut(s) 494
HpyCH4V TGCA 5 cut(s) 56, 265, 305, 364, 467
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 188, 432
HpyF3I CTNAG 3 cut(s) 77, 436, 576
HpySE526I ACGT 1 cut(s) 494
Hsp92II CATG 5 cut(s) 46, 60, 361, 422, 521
HspAI GCGC 2 cut(s) 11, 197
Kzo9I GATC 4 cut(s) 63, 294, 553, 564
LmnI GCTCC 1 cut(s) 476
LweI GCATC 1 cut(s) 454
MaeI CTAG 1 cut(s) 410
MaeII ACGT 1 cut(s) 494
MaeIII GTNAC 1 cut(s) 412
MalI GATC 4 cut(s) 65, 296, 555, 566
MbiI CCGCTC 1 cut(s) 479
MboI GATC 4 cut(s) 63, 294, 553, 564
MboII GAAGA 6 cut(s) 98, 110, 250, 353, 467, 559
MluCI AATT 3 cut(s) 50, 353, 365
MmeI TCCRAC 1 cut(s) 454
MnlI CCTC 3 cut(s) 152, 321, 445
MseI TTAA 1 cut(s) 528
MspI CCGG 5 cut(s) 24, 218, 278, 391, 443
MvnI CGCG 1 cut(s) 13
MwoI GCNNNNNNNGC 3 cut(s) 10, 188, 432
NdeII GATC 4 cut(s) 63, 294, 553, 564
NlaIII CATG 5 cut(s) 46, 60, 361, 422, 521
NspI RCATGY 1 cut(s) 46
PflFI GACNNNGTC 1 cut(s) 209
PspPI GGNCC 1 cut(s) 440
PsyI GACNNNGTC 1 cut(s) 209
RsaI GTAC 4 cut(s) 203, 273, 374, 507
RsaNI GTAC 4 cut(s) 202, 272, 373, 506
SaqAI TTAA 1 cut(s) 528
Sau3AI GATC 4 cut(s) 63, 294, 553, 564
Sau96I GGNCC 1 cut(s) 440
ScaI AGTACT 1 cut(s) 507
SetI ASST 4 cut(s) 497, 528, 563, 586
SfaNI GCATC 1 cut(s) 454
SfcI CTRYAG 1 cut(s) 186
SgrAI CRCCGGYG 1 cut(s) 277
Sse9I AATT 3 cut(s) 50, 353, 365
SsiI CCGC 1 cut(s) 479
SspI AATATT 1 cut(s) 20
SspMI CTAG 1 cut(s) 410
TaaI ACNGT 1 cut(s) 209
TaiI ACGT 1 cut(s) 497
TaqI TCGA 1 cut(s) 297
TasI AATT 3 cut(s) 50, 353, 365
TatI WGTACW 1 cut(s) 505
Tru1I TTAA 1 cut(s) 528
Tru9I TTAA 1 cut(s) 528
TscAI CASTG 3 cut(s) 13, 214, 240
TspDTI ATGAA 3 cut(s) 346, 360, 534
TspRI CASTG 3 cut(s) 13, 214, 240
Tth111I GACNNNGTC 1 cut(s) 209
XagI CCTNNNNNAGG 1 cut(s) 435
XceI RCATGY 1 cut(s) 46
XspI CTAG 1 cut(s) 410
ZrmI AGTACT 1 cut(s) 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.