Rmu_sc0004927.1_g000020

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004927.1
OG0000308
Physical Location & Seq
Reverse (-)
99929 .. 100617
689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004927.1_g000020.1.cds

Sequence Viewer

Length: 588 bp
atggcagcccgcttggcctcctccctagcgctggctgatggaaagcaaccggtggacttgccatggagaatcaatggcaaattgaatgttgaagaactcggagaagatgatagggtcttgttcactttcacagatccttctgatgtggataggatttggaaaggaagaccacagggatataatcgggctcctatagctttagcaccgtatgacggtgtcagtccgacaagggatataccactgaagaaatcatcctattggatgacactgcaaggagtcccaccggccttcagatctgaacgtattatgcgtctgattgggagtacacgaggcgagttcatggaatttgatcgcccggcctttcggactcgattcttgcatatcagggttgcgatcgattatgtcaaacctctcctgttttgtcgacgttttagggtggaagatgaagtccagttcatggtgcagtttcgatatgacaagctgtttggcaggtgcggcacctgcagcctcgttacccatgttggcctcccttgttcagggccggatatggaggaagaccgtgacatacctgttggcacggtggagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

195

Amino Acids

22.3

Weight (kDa)

7.66

Isoelectric Point (pI)

37.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
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Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 480, 509
Acc36I ACCTGC 2 cut(s) 480, 509
AccB1I GGYRCC 1 cut(s) 497
AccB7I CCANNNNNTGG 1 cut(s) 457
AccI GTMKAC 1 cut(s) 424
AciI CCGC 2 cut(s) 10, 495
AclWI GGATC 1 cut(s) 128
AcsI RAATTY 1 cut(s) 344
AcuI CTGAAG 2 cut(s) 263, 274
AfaI GTAC 1 cut(s) 325
AfeI AGCGCT 1 cut(s) 30
AfiI CCNNNNNNNGG 4 cut(s) 31, 212, 457, 536
AgeI ACCGGT 1 cut(s) 49
AgsI TTSAA 2 cut(s) 85, 92
AluBI AGCT 2 cut(s) 197, 481
AluI AGCT 2 cut(s) 197, 481
AlwI GGATC 1 cut(s) 128
Aor51HI AGCGCT 1 cut(s) 30
AoxI GGCC 5 cut(s) 15, 285, 357, 523, 539
ApeKI GCWGC 2 cut(s) 5, 504
ApoI RAATTY 1 cut(s) 344
ArsI GACNNNNNNTTYG 2 cut(s) 467, 499
AsiGI ACCGGT 1 cut(s) 49
AspLEI GCGC 1 cut(s) 31
AspS9I GGNCC 1 cut(s) 539
AsuC2I CCSGG 1 cut(s) 356
BanI GGYRCC 1 cut(s) 497
BanII GRGCYC 1 cut(s) 190
BauI CACGAG 1 cut(s) 327
BbsI GAAGAC 2 cut(s) 172, 561
BbvI GCAGC 2 cut(s) 17, 516
BccI CCATC 1 cut(s) 32
BcnI CCSGG 1 cut(s) 356
BfaI CTAG 1 cut(s) 26
BfmI CTRYAG 2 cut(s) 192, 502
BfoI RGCGCY 1 cut(s) 32
BfuAI ACCTGC 2 cut(s) 480, 509
BglI GCCNNNNNGGC 1 cut(s) 14
BglII AGATCT 1 cut(s) 293
BisI GCNGC 3 cut(s) 6, 496, 505
BlsI GCNGC 3 cut(s) 7, 497, 506
Bme1390I CCNGG 1 cut(s) 356
BmgT120I GGNCC 1 cut(s) 539
BmiI GGNNCC 2 cut(s) 189, 499
BmrFI CCNGG 1 cut(s) 356
BpiI GAAGAC 2 cut(s) 172, 561
BpuMI CCSGG 1 cut(s) 356
Bsa29I ATCGAT 1 cut(s) 396
BsaJI CCNNGG 1 cut(s) 62
BsaWI WCCGGW 1 cut(s) 49
Bsc4I CCNNNNNNNGG 4 cut(s) 31, 212, 457, 536
Bse118I RCCGGY 2 cut(s) 49, 283
Bse1I ACTGG 1 cut(s) 451
BseCI ATCGAT 1 cut(s) 396
BseDI CCNNGG 1 cut(s) 62
BseGI GGATG 2 cut(s) 251, 267
BseLI CCNNNNNNNGG 4 cut(s) 31, 212, 457, 536
BseNI ACTGG 1 cut(s) 451
BseRI GAGGAG 1 cut(s) 10
BseXI GCAGC 2 cut(s) 17, 516
BsgI GTGCAG 1 cut(s) 482
Bsh1285I CGRYCG 1 cut(s) 396
BshFI GGCC 5 cut(s) 17, 287, 359, 525, 541
BshNI GGYRCC 1 cut(s) 497
BshTI ACCGGT 1 cut(s) 49
BshVI ATCGAT 1 cut(s) 396
BsiEI CGRYCG 1 cut(s) 396
BsiSI CCGG 4 cut(s) 50, 284, 356, 542
BslFI GGGAC 1 cut(s) 263
BslI CCNNNNNNNGG 4 cut(s) 31, 212, 457, 536
BsmFI GGGAC 1 cut(s) 263
BsnI GGCC 5 cut(s) 17, 287, 359, 525, 541
Bsp1286I GDGCHC 1 cut(s) 190
Bsp143I GATC 4 cut(s) 133, 293, 349, 393
Bsp19I CCATGG 1 cut(s) 62
BspACI CCGC 2 cut(s) 10, 495
BspANI GGCC 5 cut(s) 17, 287, 359, 525, 541
BspDI ATCGAT 1 cut(s) 396
BspLI GGNNCC 2 cut(s) 189, 499
BspMAI CTGCAG 1 cut(s) 506
BspMI ACCTGC 2 cut(s) 480, 509
BspPI GGATC 1 cut(s) 128
BspT107I GGYRCC 1 cut(s) 497
BsrFI RCCGGY 2 cut(s) 49, 283
BsrI ACTGG 1 cut(s) 451
BssAI RCCGGY 2 cut(s) 49, 283
BssECI CCNNGG 1 cut(s) 62
BssMI GATC 4 cut(s) 133, 293, 349, 393
BssSI CACGAG 1 cut(s) 327
BssT1I CCWWGG 1 cut(s) 62
Bst2BI CACGAG 1 cut(s) 327
Bst4CI ACNGT 4 cut(s) 207, 215, 560, 580
BstC8I GCNNGC 2 cut(s) 10, 33
BstDSI CCRYGG 1 cut(s) 62
BstENI CCTNNNNNAGG 1 cut(s) 534
BstF5I GGATG 2 cut(s) 251, 267
BstH2I RGCGCY 1 cut(s) 32
BstHHI GCGC 1 cut(s) 31
BstKTI GATC 4 cut(s) 136, 296, 352, 396
BstMBI GATC 4 cut(s) 133, 293, 349, 393
BstMCI CGRYCG 1 cut(s) 396
BstMWI GCNNNNNNNGC 5 cut(s) 14, 194, 495, 501, 504
BstSCI CCNGG 1 cut(s) 354
BstSFI CTRYAG 2 cut(s) 192, 502
BstV1I GCAGC 2 cut(s) 17, 516
BstV2I GAAGAC 2 cut(s) 172, 561
BstX2I RGATCY 2 cut(s) 133, 293
BstYI RGATCY 2 cut(s) 133, 293
Bsu15I ATCGAT 1 cut(s) 396
BsuRI GGCC 5 cut(s) 17, 287, 359, 525, 541
BsuTUI ATCGAT 1 cut(s) 396
BtgI CCRYGG 1 cut(s) 62
BtsCI GGATG 2 cut(s) 251, 267
BtsI GCAGTG 1 cut(s) 266
BtsIMutI CAGTG 2 cut(s) 239, 266
BveI ACCTGC 2 cut(s) 480, 509
Cac8I GCNNGC 2 cut(s) 10, 33
CfoI GCGC 1 cut(s) 31
Cfr10I RCCGGY 2 cut(s) 49, 283
Cfr13I GGNCC 1 cut(s) 539
ClaI ATCGAT 1 cut(s) 396
CseI GACGC 1 cut(s) 299
Csp6I GTAC 1 cut(s) 324
CspAI ACCGGT 1 cut(s) 49
CviAII CATG 4 cut(s) 63, 340, 457, 518
CviQI GTAC 1 cut(s) 324
DpnI GATC 4 cut(s) 135, 295, 351, 395
DpnII GATC 4 cut(s) 133, 293, 349, 393
Eco130I CCWWGG 1 cut(s) 62
Eco24I GRGCYC 1 cut(s) 190
Eco47III AGCGCT 1 cut(s) 30
Eco57I CTGAAG 2 cut(s) 263, 274
EcoNI CCTNNNNNAGG 1 cut(s) 534
EcoT14I CCWWGG 1 cut(s) 62
EcoT38I GRGCYC 1 cut(s) 190
ErhI CCWWGG 1 cut(s) 62
FaeI CATG 4 cut(s) 66, 343, 460, 521
FaqI GGGAC 1 cut(s) 263
FatI CATG 4 cut(s) 62, 339, 456, 517
FauI CCCGC 1 cut(s) 17
FblI GTMKAC 1 cut(s) 424
Fnu4HI GCNGC 3 cut(s) 6, 496, 505
FokI GGATG 2 cut(s) 238, 274
FriOI GRGCYC 1 cut(s) 190
Fsp4HI GCNGC 3 cut(s) 6, 496, 505
FspBI CTAG 1 cut(s) 26
GlaI GCGC 1 cut(s) 30
GluI GCNGC 3 cut(s) 6, 496, 505
HaeII RGCGCY 1 cut(s) 32
HaeIII GGCC 5 cut(s) 17, 287, 359, 525, 541
HapII CCGG 4 cut(s) 50, 284, 356, 542
HgaI GACGC 1 cut(s) 299
HhaI GCGC 1 cut(s) 31
Hin1II CATG 4 cut(s) 66, 343, 460, 521
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
HincII GTYRAC 1 cut(s) 425
HindII GTYRAC 1 cut(s) 425
HinfI GANTC 4 cut(s) 69, 276, 367, 372
HpaII CCGG 4 cut(s) 50, 284, 356, 542
Hpy166II GTNNAC 4 cut(s) 55, 123, 326, 425
Hpy188I TCNGA 7 cut(s) 101, 142, 225, 293, 298, 315, 366
Hpy8I GTNNAC 4 cut(s) 55, 123, 326, 425
Hpy99I CGWCG 1 cut(s) 429
HpyAV CCTTC 2 cut(s) 147, 298
HpyCH4III ACNGT 4 cut(s) 207, 215, 560, 580
HpyCH4IV ACGT 2 cut(s) 301, 427
HpyCH4V TGCA 4 cut(s) 271, 379, 463, 504
HpyF10VI GCNNNNNNNGC 5 cut(s) 14, 194, 495, 501, 504
HpySE526I ACGT 2 cut(s) 301, 427
Hsp92II CATG 4 cut(s) 66, 343, 460, 521
HspAI GCGC 1 cut(s) 29
Kzo9I GATC 4 cut(s) 133, 293, 349, 393
LmnI GCTCC 1 cut(s) 193
Lsp1109I GCAGC 2 cut(s) 17, 516
MaeI CTAG 1 cut(s) 26
MaeII ACGT 2 cut(s) 301, 427
MaeIII GTNAC 2 cut(s) 511, 560
MalI GATC 4 cut(s) 135, 295, 351, 395
MboI GATC 4 cut(s) 133, 293, 349, 393
MboII GAAGA 6 cut(s) 104, 116, 177, 256, 452, 566
MflI RGATCY 2 cut(s) 133, 293
MhlI GDGCHC 1 cut(s) 190
MluCI AATT 2 cut(s) 80, 344
MlyI GAGTC 2 cut(s) 285, 361
MmeI TCCRAC 1 cut(s) 248
MnlI CCTC 7 cut(s) 28, 31, 323, 420, 518, 536, 544
MspI CCGG 4 cut(s) 50, 284, 356, 542
MspR9I CCNGG 1 cut(s) 356
MwoI GCNNNNNNNGC 5 cut(s) 14, 194, 495, 501, 504
NciI CCSGG 1 cut(s) 356
NcoI CCATGG 1 cut(s) 62
NdeII GATC 4 cut(s) 133, 293, 349, 393
NlaIII CATG 4 cut(s) 66, 343, 460, 521
NlaIV GGNNCC 2 cut(s) 189, 499
NmuCI GTSAC 1 cut(s) 560
PaqCI CACCTGC 2 cut(s) 480, 509
PcsI WCGNNNNNNNCGW 1 cut(s) 307
PfeI GAWTC 2 cut(s) 69, 372
PflFI GACNNNGTC 1 cut(s) 215
PflMI CCANNNNNTGG 1 cut(s) 457
PinAI ACCGGT 1 cut(s) 49
PkrI GCNGC 3 cut(s) 7, 497, 506
Ple19I CGATCG 1 cut(s) 396
PleI GAGTC 2 cut(s) 284, 361
PpsI GAGTC 2 cut(s) 284, 361
PspN4I GGNNCC 2 cut(s) 189, 499
PspPI GGNCC 1 cut(s) 539
PstI CTGCAG 1 cut(s) 506
PsuI RGATCY 2 cut(s) 133, 293
PsyI GACNNNGTC 1 cut(s) 215
PvuI CGATCG 1 cut(s) 396
RsaI GTAC 1 cut(s) 325
RsaNI GTAC 1 cut(s) 324
SalI GTCGAC 1 cut(s) 423
SatI GCNGC 3 cut(s) 6, 496, 505
Sau3AI GATC 4 cut(s) 133, 293, 349, 393
Sau96I GGNCC 1 cut(s) 539
SchI GAGTC 2 cut(s) 285, 361
ScrFI CCNGG 1 cut(s) 356
SduI GDGCHC 1 cut(s) 190
SetI ASST 8 cut(s) 199, 304, 412, 430, 483, 494, 503, 571
SfcI CTRYAG 2 cut(s) 192, 502
Sse9I AATT 2 cut(s) 80, 344
SsiI CCGC 2 cut(s) 10, 495
SspMI CTAG 1 cut(s) 26
StyD4I CCNGG 1 cut(s) 354
StyI CCWWGG 1 cut(s) 62
TaaI ACNGT 4 cut(s) 207, 215, 560, 580
TaiI ACGT 2 cut(s) 304, 430
TaqI TCGA 4 cut(s) 370, 396, 424, 469
TasI AATT 2 cut(s) 80, 344
TatI WGTACW 1 cut(s) 323
TauI GCSGC 1 cut(s) 498
TfiI GAWTC 2 cut(s) 69, 372
TscAI CASTG 2 cut(s) 246, 273
TseFI GTSAC 1 cut(s) 560
TseI GCWGC 2 cut(s) 5, 504
Tsp45I GTSAC 1 cut(s) 560
TspDTI ATGAA 3 cut(s) 328, 445, 459
TspRI CASTG 2 cut(s) 246, 273
Tth111I GACNNNGTC 1 cut(s) 215
Van91I CCANNNNNTGG 1 cut(s) 457
XagI CCTNNNNNAGG 1 cut(s) 534
XapI RAATTY 1 cut(s) 344
XmiI GTMKAC 1 cut(s) 424
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.