Rmu_sc0006168.1_g000026

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006168.1
OG0000308
Physical Location & Seq
Reverse (-)
81520 .. 82824
1305 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006168.1_g000026.1.cds

Sequence Viewer

Length: 867 bp
atgtcaatggcaattgatgcaatggcagctcgcttggcctcctccctagcgttggctgatggcaagaaatcggtggacctgcgtccatccaaaggactgagacaacccgaagctttcatgggctcctgtagcactagtgtcatacgacggtatcagttcagcgagcgagatgccactgaagaaatcatcctactggatgacgctgcaagtggtacagccggtgttcagatcgactatgcaatgcctctcttgtttcgtcgccgcttctgggtggaagatgaagttcaattcatggtgcagtttcggtatgataagttgtttggtagatgtggtacctgtggcctagttacccacgttggccttccttgttcagggttggatctggaaaaagatagtgctacaccagttagagtggtggcgcagcccacggccttggcaatactacggggacaggaaaaccctaataacaatacggtggtggtaaacaatcaaaccttgatcttcaaggctcagacaccaaatagcataccagaagctttacttccccaatctgtggtggccatgctgaatatgggtttattggagggaccttccaacaatagtgatcaaccaaatagaaaaagaggacgccctgttggaagtgtgaataagctgccttatggaacagcaggaaatggaaaaaagaaagatggtgaacctgaaaagacaaagagcaaaaagaccaacctgatgccgaggttgttagctgctgaggagcctgaaactagtactagctctaaccctagtacttgcttaaggtacaaaatttcaagacattctgaacttcaagccttctcaagtgggagtaatctctatatactttcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 ko04934 ko05202 map00310 map04934 map05202
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4

Protein Analysis

288

Amino Acids

31.38

Weight (kDa)

9.07

Isoelectric Point (pI)

47.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 87
Acc65I GGTACC 1 cut(s) 332
AccB1I GGYRCC 1 cut(s) 332
AccB7I CCANNNNNTGG 1 cut(s) 553
AciI CCGC 1 cut(s) 262
AclWI GGATC 1 cut(s) 387
AcoI YGGCCR 1 cut(s) 558
AcsI RAATTY 1 cut(s) 804
AcuI CTGAAG 1 cut(s) 198
AcyI GRCGYC 1 cut(s) 628
AfaI GTAC 5 cut(s) 214, 334, 769, 787, 800
AfiI CCNNNNNNNGG 5 cut(s) 52, 92, 268, 371, 553
AflII CTTAAG 1 cut(s) 793
AgsI TTSAA 4 cut(s) 287, 505, 810, 827
AhlI ACTAGT 2 cut(s) 134, 764
AluBI AGCT 6 cut(s) 29, 113, 536, 652, 746, 774
AluI AGCT 6 cut(s) 29, 113, 536, 652, 746, 774
Alw26I GTCTC 1 cut(s) 94
AlwI GGATC 1 cut(s) 387
AoxI GGCC 5 cut(s) 36, 340, 358, 429, 558
ApeKI GCWGC 5 cut(s) 26, 203, 421, 652, 746
ApoI RAATTY 1 cut(s) 804
Asp718I GGTACC 1 cut(s) 332
AspLEI GCGC 1 cut(s) 421
AspS9I GGNCC 2 cut(s) 76, 587
AsuHPI GGTGA 1 cut(s) 704
AvaII GGWCC 2 cut(s) 76, 587
BaeI ACNNNNGTAYC 2 cut(s) 134, 167
BalI TGGCCA 1 cut(s) 560
BanI GGYRCC 1 cut(s) 332
BanII GRGCYC 1 cut(s) 125
BbvCI CCTCAGC 1 cut(s) 750
BbvI GCAGC 5 cut(s) 38, 190, 433, 639, 733
BccI CCATC 3 cut(s) 53, 94, 683
BceAI ACGGC 1 cut(s) 444
BcgI CGANNNNNNTGC 2 cut(s) 152, 186
BclI TGATCA 1 cut(s) 604
BcoDI GTCTC 1 cut(s) 94
BcuI ACTAGT 2 cut(s) 134, 764
BfaI CTAG 6 cut(s) 47, 135, 344, 765, 771, 783
BfmI CTRYAG 1 cut(s) 127
BfrI CTTAAG 1 cut(s) 793
BfuAI ACCTGC 1 cut(s) 87
BisI GCNGC 6 cut(s) 27, 204, 262, 422, 653, 747
BlsI GCNGC 6 cut(s) 28, 205, 263, 423, 654, 748
BmcAI AGTACT 2 cut(s) 769, 787
Bme18I GGWCC 2 cut(s) 76, 587
BmgT120I GGNCC 2 cut(s) 76, 587
BmiI GGNNCC 4 cut(s) 124, 334, 588, 756
BmsI GCATC 3 cut(s) 7, 160, 720
BoxI GACNNNNGTC 1 cut(s) 81
Bpu10I CCTNAGC 1 cut(s) 750
BpuEI CTTGAG 1 cut(s) 820
BsaHI GRCGYC 1 cut(s) 628
BsaJI CCNNGG 3 cut(s) 426, 432, 734
Bsc4I CCNNNNNNNGG 5 cut(s) 52, 92, 268, 371, 553
Bse118I RCCGGY 1 cut(s) 218
Bse1I ACTGG 2 cut(s) 198, 404
Bse3DI GCAATG 2 cut(s) 27, 246
BseDI CCNNGG 3 cut(s) 426, 432, 734
BseGI GGATG 3 cut(s) 86, 186, 202
BseLI CCNNNNNNNGG 5 cut(s) 52, 92, 268, 371, 553
BseMI GCAATG 2 cut(s) 27, 246
BseMII CTCAG 3 cut(s) 89, 524, 741
BseNI ACTGG 2 cut(s) 198, 404
BseRI GAGGAG 2 cut(s) 31, 767
BseXI GCAGC 5 cut(s) 38, 190, 433, 639, 733
BsgI GTGCAG 1 cut(s) 317
BshFI GGCC 5 cut(s) 38, 342, 360, 431, 560
BshNI GGYRCC 1 cut(s) 332
BsiSI CCGG 1 cut(s) 219
BslFI GGGAC 2 cut(s) 462, 600
BslI CCNNNNNNNGG 5 cut(s) 52, 92, 268, 371, 553
BsmAI GTCTC 1 cut(s) 94
BsmFI GGGAC 2 cut(s) 462, 600
BsnI GGCC 5 cut(s) 38, 342, 360, 431, 560
Bsp1286I GDGCHC 1 cut(s) 125
Bsp143I GATC 4 cut(s) 228, 379, 498, 604
BspACI CCGC 1 cut(s) 262
BspANI GGCC 5 cut(s) 38, 342, 360, 431, 560
BspCNI CTCAG 3 cut(s) 90, 523, 742
BspLI GGNNCC 4 cut(s) 124, 334, 588, 756
BspMI ACCTGC 1 cut(s) 87
BspPI GGATC 1 cut(s) 387
BspT107I GGYRCC 1 cut(s) 332
BspTI CTTAAG 1 cut(s) 793
BsrDI GCAATG 2 cut(s) 27, 246
BsrFI RCCGGY 1 cut(s) 218
BsrI ACTGG 2 cut(s) 198, 404
BssAI RCCGGY 1 cut(s) 218
BssECI CCNNGG 3 cut(s) 426, 432, 734
BssMI GATC 4 cut(s) 228, 379, 498, 604
BssNI GRCGYC 1 cut(s) 628
BssT1I CCWWGG 1 cut(s) 432
Bst4CI ACNGT 2 cut(s) 150, 475
BstACI GRCGYC 1 cut(s) 628
BstAFI CTTAAG 1 cut(s) 793
BstAPI GCANNNNNTGC 1 cut(s) 17
BstC8I GCNNGC 2 cut(s) 31, 164
BstDEI CTNAG 4 cut(s) 98, 510, 750, 864
BstDSI CCRYGG 1 cut(s) 426
BstENI CCTNNNNNAGG 1 cut(s) 369
BstF5I GGATG 3 cut(s) 86, 186, 202
BstHHI GCGC 1 cut(s) 421
BstKTI GATC 4 cut(s) 231, 382, 501, 607
BstMAI GTCTC 1 cut(s) 94
BstMBI GATC 4 cut(s) 228, 379, 498, 604
BstMWI GCNNNNNNNGC 4 cut(s) 17, 26, 35, 129
BstPAI GACNNNNGTC 1 cut(s) 81
BstSFI CTRYAG 1 cut(s) 127
BstV1I GCAGC 5 cut(s) 38, 190, 433, 639, 733
BstX2I RGATCY 1 cut(s) 379
BstXI CCANNNNNNTGG 1 cut(s) 433
BstYI RGATCY 1 cut(s) 379
BsuRI GGCC 5 cut(s) 38, 342, 360, 431, 560
BtgI CCRYGG 1 cut(s) 426
BtsCI GGATG 3 cut(s) 86, 186, 202
BtsIMutI CAGTG 1 cut(s) 174
BveI ACCTGC 1 cut(s) 87
Cac8I GCNNGC 2 cut(s) 31, 164
CfoI GCGC 1 cut(s) 421
Cfr10I RCCGGY 1 cut(s) 218
Cfr13I GGNCC 2 cut(s) 76, 587
CseI GACGC 3 cut(s) 71, 209, 636
Csp6I GTAC 5 cut(s) 213, 333, 768, 786, 799
CviAII CATG 3 cut(s) 118, 292, 562
CviQI GTAC 5 cut(s) 213, 333, 768, 786, 799
DdeI CTNAG 4 cut(s) 98, 510, 750, 864
DpnI GATC 4 cut(s) 230, 381, 500, 606
DpnII GATC 4 cut(s) 228, 379, 498, 604
EaeI YGGCCR 1 cut(s) 558
Eco130I CCWWGG 1 cut(s) 432
Eco24I GRGCYC 1 cut(s) 125
Eco47I GGWCC 2 cut(s) 76, 587
Eco57I CTGAAG 1 cut(s) 198
EcoNI CCTNNNNNAGG 1 cut(s) 369
EcoO109I RGGNCCY 1 cut(s) 587
EcoT14I CCWWGG 1 cut(s) 432
EcoT38I GRGCYC 1 cut(s) 125
ErhI CCWWGG 1 cut(s) 432
FaeI CATG 3 cut(s) 121, 295, 565
FalI AAGNNNNNCTT 2 cut(s) 525, 557
FaqI GGGAC 2 cut(s) 462, 600
FatI CATG 3 cut(s) 117, 291, 561
FbaI TGATCA 1 cut(s) 604
Fnu4HI GCNGC 6 cut(s) 27, 204, 262, 422, 653, 747
FokI GGATG 3 cut(s) 73, 173, 209
FriOI GRGCYC 1 cut(s) 125
Fsp4HI GCNGC 6 cut(s) 27, 204, 262, 422, 653, 747
FspBI CTAG 6 cut(s) 47, 135, 344, 765, 771, 783
GlaI GCGC 1 cut(s) 420
GluI GCNGC 6 cut(s) 27, 204, 262, 422, 653, 747
HaeIII GGCC 5 cut(s) 38, 342, 360, 431, 560
HapII CCGG 1 cut(s) 219
HgaI GACGC 3 cut(s) 71, 209, 636
HhaI GCGC 1 cut(s) 421
Hin1I GRCGYC 1 cut(s) 628
Hin1II CATG 3 cut(s) 121, 295, 565
Hin6I GCGC 1 cut(s) 419
HinP1I GCGC 1 cut(s) 419
HindIII AAGCTT 2 cut(s) 111, 534
HpaII CCGG 1 cut(s) 219
HphI GGTGA 1 cut(s) 704
Hpy166II GTNNAC 3 cut(s) 76, 484, 695
Hpy188I TCNGA 3 cut(s) 228, 513, 820
Hpy188III TCNNGA 2 cut(s) 383, 810
Hpy8I GTNNAC 3 cut(s) 76, 484, 695
Hpy99I CGWCG 2 cut(s) 150, 261
HpyAV CCTTC 3 cut(s) 371, 600, 841
HpyCH4III ACNGT 2 cut(s) 150, 475
HpyCH4IV ACGT 1 cut(s) 354
HpyCH4V TGCA 4 cut(s) 20, 206, 239, 298
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 26, 35, 129
HpyF3I CTNAG 4 cut(s) 98, 510, 750, 864
HpySE526I ACGT 1 cut(s) 354
Hsp92I GRCGYC 1 cut(s) 628
Hsp92II CATG 3 cut(s) 121, 295, 565
HspAI GCGC 1 cut(s) 419
KpnI GGTACC 1 cut(s) 336
Ksp22I TGATCA 1 cut(s) 604
Kzo9I GATC 4 cut(s) 228, 379, 498, 604
LmnI GCTCC 2 cut(s) 128, 754
Lsp1109I GCAGC 5 cut(s) 38, 190, 433, 639, 733
LweI GCATC 3 cut(s) 7, 160, 720
MaeI CTAG 6 cut(s) 47, 135, 344, 765, 771, 783
MaeII ACGT 1 cut(s) 354
MaeIII GTNAC 1 cut(s) 346
MalI GATC 4 cut(s) 230, 381, 500, 606
MboI GATC 4 cut(s) 228, 379, 498, 604
MboII GAAGA 3 cut(s) 191, 287, 493
MfeI CAATTG 1 cut(s) 12
MflI RGATCY 1 cut(s) 379
MhlI GDGCHC 1 cut(s) 125
MlsI TGGCCA 1 cut(s) 560
MluCI AATT 3 cut(s) 12, 287, 804
MluNI TGGCCA 1 cut(s) 560
MmeI TCCRAC 3 cut(s) 357, 616, 618
MnlI CCTC 7 cut(s) 49, 52, 255, 577, 617, 729, 745
Mox20I TGGCCA 1 cut(s) 560
MscI TGGCCA 1 cut(s) 560
MseI TTAA 1 cut(s) 794
Msp20I TGGCCA 1 cut(s) 560
MspCI CTTAAG 1 cut(s) 793
MspI CCGG 1 cut(s) 219
MunI CAATTG 1 cut(s) 12
MwoI GCNNNNNNNGC 4 cut(s) 17, 26, 35, 129
NdeII GATC 4 cut(s) 228, 379, 498, 604
NlaIII CATG 3 cut(s) 121, 295, 565
NlaIV GGNNCC 4 cut(s) 124, 334, 588, 756
NmeAIII GCCGAG 1 cut(s) 759
PflMI CCANNNNNTGG 1 cut(s) 553
PkrI GCNGC 6 cut(s) 28, 205, 263, 423, 654, 748
PpuMI RGGWCCY 1 cut(s) 587
PshAI GACNNNNGTC 1 cut(s) 81
Psp5II RGGWCCY 1 cut(s) 587
PspN4I GGNNCC 4 cut(s) 124, 334, 588, 756
PspPI GGNCC 2 cut(s) 76, 587
PspPPI RGGWCCY 1 cut(s) 587
PsuI RGATCY 1 cut(s) 379
RsaI GTAC 5 cut(s) 214, 334, 769, 787, 800
RsaNI GTAC 5 cut(s) 213, 333, 768, 786, 799
SaqAI TTAA 1 cut(s) 794
SatI GCNGC 6 cut(s) 27, 204, 262, 422, 653, 747
Sau3AI GATC 4 cut(s) 228, 379, 498, 604
Sau96I GGNCC 2 cut(s) 76, 587
ScaI AGTACT 2 cut(s) 769, 787
SduI GDGCHC 1 cut(s) 125
SfaNI GCATC 3 cut(s) 7, 160, 720
SfcI CTRYAG 1 cut(s) 127
SinI GGWCC 2 cut(s) 76, 587
SmlI CTYRAG 2 cut(s) 793, 835
SmoI CTYRAG 2 cut(s) 793, 835
SpeI ACTAGT 2 cut(s) 134, 764
Sse9I AATT 3 cut(s) 12, 287, 804
SsiI CCGC 1 cut(s) 262
SspMI CTAG 6 cut(s) 47, 135, 344, 765, 771, 783
StyI CCWWGG 1 cut(s) 432
TaaI ACNGT 2 cut(s) 150, 475
TaiI ACGT 1 cut(s) 357
TaqI TCGA 1 cut(s) 231
TasI AATT 3 cut(s) 12, 287, 804
TatI WGTACW 2 cut(s) 767, 785
TauI GCSGC 1 cut(s) 264
Tru1I TTAA 1 cut(s) 794
Tru9I TTAA 1 cut(s) 794
TscAI CASTG 1 cut(s) 181
TseI GCWGC 5 cut(s) 26, 203, 421, 652, 746
TspDTI ATGAA 3 cut(s) 106, 280, 294
TspRI CASTG 1 cut(s) 181
Van91I CCANNNNNTGG 1 cut(s) 553
Vha464I CTTAAG 1 cut(s) 793
VpaK11BI GGWCC 2 cut(s) 76, 587
XagI CCTNNNNNAGG 1 cut(s) 369
XapI RAATTY 1 cut(s) 804
XcmI CCANNNNNNNNNTGG 1 cut(s) 568
XspI CTAG 6 cut(s) 47, 135, 344, 765, 771, 783
ZrmI AGTACT 2 cut(s) 769, 787
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.