Rmu_sc0000359.1_g000009

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000359.1
OG0000308
Physical Location & Seq
Reverse (-)
39419 .. 40072
654 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000359.1_g000009.1.cds

Sequence Viewer

Length: 552 bp
atggcagcgatcgacgcaatggcagaccgcttggcctcctccctagccctcgctgatgggaagaacccggtggatctgcgcccttccaaggacaaccccgaggctttcatgattggcaaattactgacagcaagggaatactcgcgcagatcattcctaggaatgttccgggctgcatggaggattaatggtaatctcagggtggaggaagttggagaagatgatagagttttcccggctgtggaggtgcccctcaagaagtcatcgtactggatgacgctgcaaggaataccacctacattccgatcggagcgcatcatgcgccgcattggaagcacgctaggaaacttcaaggaaatcgatcgtccggcgttcaggaatcggactatgcgcatccgagttgagatggattatgtgaaacctctgttattccgccgtcgtttttgggtcgaagacgaagtccagttcgtagtgcagttcgggtatgacaagatcttcggtcgttgcggcacatgtggactagttactcatgttggcctcccatgttcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

183

Amino Acids

21.03

Weight (kDa)

9.75

Isoelectric Point (pI)

40.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 392
AccB1I GGYRCC 1 cut(s) 247
AccII CGCG 1 cut(s) 145
AciI CCGC 4 cut(s) 28, 325, 433, 507
AclWI GGATC 1 cut(s) 81
AfaI GTAC 1 cut(s) 269
AfiI CCNNNNNNNGG 2 cut(s) 88, 241
AflIII ACRYGT 1 cut(s) 512
AgsI TTSAA 1 cut(s) 352
AhlI ACTAGT 1 cut(s) 520
AlwI GGATC 1 cut(s) 81
Ama87I CYCGRG 1 cut(s) 98
AoxI GGCC 2 cut(s) 33, 535
ApeKI GCWGC 3 cut(s) 5, 173, 280
ArsI GACNNNNNNTTYG 4 cut(s) 444, 476, 479, 511
AseI ATTAAT 1 cut(s) 186
AspA2I CCTAGG 1 cut(s) 157
AspLEI GCGC 5 cut(s) 81, 147, 315, 324, 393
AsuC2I CCSGG 3 cut(s) 68, 170, 236
AvaI CYCGRG 1 cut(s) 98
AvrII CCTAGG 1 cut(s) 157
BaeGI GKGCMC 1 cut(s) 252
BanI GGYRCC 1 cut(s) 247
BarI GAAGNNNNNNTAC 2 cut(s) 251, 283
BbsI GAAGAC 1 cut(s) 459
BbvI GCAGC 3 cut(s) 17, 160, 267
BccI CCATC 2 cut(s) 50, 400
BceAI ACGGC 1 cut(s) 420
BcnI CCSGG 3 cut(s) 68, 170, 236
BcuI ACTAGT 1 cut(s) 520
BfaI CTAG 4 cut(s) 44, 158, 341, 521
BglII AGATCT 1 cut(s) 492
BisI GCNGC 5 cut(s) 6, 174, 281, 325, 508
BlnI CCTAGG 1 cut(s) 157
BlsI GCNGC 5 cut(s) 7, 175, 282, 326, 509
Bme1390I CCNGG 3 cut(s) 68, 170, 236
BmeT110I CYCGRG 1 cut(s) 98
BmiI GGNNCC 1 cut(s) 249
BmrFI CCNGG 3 cut(s) 68, 170, 236
BmsI GCATC 2 cut(s) 324, 402
BpiI GAAGAC 1 cut(s) 459
BpuEI CTTGAG 1 cut(s) 239
BpuMI CCSGG 3 cut(s) 68, 170, 236
Bsa29I ATCGAT 1 cut(s) 360
BsaJI CCNNGG 3 cut(s) 87, 99, 157
Bsc4I CCNNNNNNNGG 2 cut(s) 88, 241
Bse1I ACTGG 2 cut(s) 275, 463
Bse3DI GCAATG 1 cut(s) 24
BseCI ATCGAT 1 cut(s) 360
BseDI CCNNGG 3 cut(s) 87, 99, 157
BseGI GGATG 2 cut(s) 279, 393
BseLI CCNNNNNNNGG 2 cut(s) 88, 241
BseMI GCAATG 1 cut(s) 24
BseMII CTCAG 1 cut(s) 211
BseNI ACTGG 2 cut(s) 275, 463
BseRI GAGGAG 1 cut(s) 28
BseSI GKGCMC 1 cut(s) 252
BseXI GCAGC 3 cut(s) 17, 160, 267
BsgI GTGCAG 1 cut(s) 494
Bsh1236I CGCG 1 cut(s) 145
Bsh1285I CGRYCG 4 cut(s) 12, 308, 364, 502
BshFI GGCC 2 cut(s) 35, 537
BshNI GGYRCC 1 cut(s) 247
BshVI ATCGAT 1 cut(s) 360
BsiEI CGRYCG 4 cut(s) 12, 308, 364, 502
BsiHKCI CYCGRG 1 cut(s) 98
BsiSI CCGG 4 cut(s) 68, 169, 236, 368
BslI CCNNNNNNNGG 2 cut(s) 88, 241
BsnI GGCC 2 cut(s) 35, 537
BsoBI CYCGRG 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 252
Bsp143I GATC 6 cut(s) 9, 73, 149, 305, 361, 492
BspACI CCGC 4 cut(s) 28, 325, 433, 507
BspANI GGCC 2 cut(s) 35, 537
BspCNI CTCAG 1 cut(s) 210
BspDI ATCGAT 1 cut(s) 360
BspFNI CGCG 1 cut(s) 145
BspHI TCATGA 1 cut(s) 108
BspLI GGNNCC 1 cut(s) 249
BspPI GGATC 1 cut(s) 81
BspT107I GGYRCC 1 cut(s) 247
BsrDI GCAATG 1 cut(s) 24
BsrI ACTGG 2 cut(s) 275, 463
BssECI CCNNGG 3 cut(s) 87, 99, 157
BssMI GATC 6 cut(s) 9, 73, 149, 305, 361, 492
BssT1I CCWWGG 2 cut(s) 87, 157
BstC8I GCNNGC 1 cut(s) 338
BstDEI CTNAG 1 cut(s) 197
BstF5I GGATG 2 cut(s) 279, 393
BstFNI CGCG 1 cut(s) 145
BstHHI GCGC 5 cut(s) 81, 147, 315, 324, 393
BstKTI GATC 6 cut(s) 12, 76, 152, 308, 364, 495
BstMBI GATC 6 cut(s) 9, 73, 149, 305, 361, 492
BstMCI CGRYCG 4 cut(s) 12, 308, 364, 502
BstMWI GCNNNNNNNGC 4 cut(s) 14, 319, 321, 333
BstNSI RCATGY 1 cut(s) 516
BstSCI CCNGG 3 cut(s) 66, 168, 234
BstSLI GKGCMC 1 cut(s) 252
BstUI CGCG 1 cut(s) 145
BstV1I GCAGC 3 cut(s) 17, 160, 267
BstV2I GAAGAC 1 cut(s) 459
BstX2I RGATCY 2 cut(s) 73, 492
BstYI RGATCY 2 cut(s) 73, 492
Bsu15I ATCGAT 1 cut(s) 360
BsuRI GGCC 2 cut(s) 35, 537
BsuTUI ATCGAT 1 cut(s) 360
BtsCI GGATG 2 cut(s) 279, 393
Cac8I GCNNGC 1 cut(s) 338
CciI TCATGA 1 cut(s) 108
CfoI GCGC 5 cut(s) 81, 147, 315, 324, 393
ClaI ATCGAT 1 cut(s) 360
CseI GACGC 2 cut(s) 23, 286
Csp6I GTAC 1 cut(s) 268
CviAII CATG 6 cut(s) 109, 177, 319, 513, 530, 543
CviJI RGCY 6 cut(s) 35, 47, 104, 173, 239, 537
CviKI_1 RGCY 6 cut(s) 35, 47, 104, 173, 239, 537
CviQI GTAC 1 cut(s) 268
DdeI CTNAG 1 cut(s) 197
DpnI GATC 6 cut(s) 11, 75, 151, 307, 363, 494
DpnII GATC 6 cut(s) 9, 73, 149, 305, 361, 492
EciI GGCGGA 1 cut(s) 422
Eco130I CCWWGG 2 cut(s) 87, 157
Eco88I CYCGRG 1 cut(s) 98
EcoT14I CCWWGG 2 cut(s) 87, 157
ErhI CCWWGG 2 cut(s) 87, 157
FaeI CATG 6 cut(s) 112, 180, 322, 516, 533, 546
FaiI YATR 9 cut(s) 110, 178, 320, 389, 414, 486, 514, 531, 544
FatI CATG 6 cut(s) 108, 176, 318, 512, 529, 542
Fnu4HI GCNGC 5 cut(s) 6, 174, 281, 325, 508
FokI GGATG 2 cut(s) 286, 380
Fsp4HI GCNGC 5 cut(s) 6, 174, 281, 325, 508
FspAI RTGCGCAY 1 cut(s) 392
FspBI CTAG 4 cut(s) 44, 158, 341, 521
FspI TGCGCA 1 cut(s) 392
GlaI GCGC 5 cut(s) 80, 146, 314, 323, 392
GluI GCNGC 5 cut(s) 6, 174, 281, 325, 508
HaeIII GGCC 2 cut(s) 35, 537
HapII CCGG 4 cut(s) 68, 169, 236, 368
HgaI GACGC 2 cut(s) 23, 286
HhaI GCGC 5 cut(s) 81, 147, 315, 324, 393
Hin1II CATG 6 cut(s) 112, 180, 322, 516, 533, 546
Hin6I GCGC 5 cut(s) 79, 145, 313, 322, 391
HinP1I GCGC 5 cut(s) 79, 145, 313, 322, 391
HinfI GANTC 1 cut(s) 379
HpaII CCGG 4 cut(s) 68, 169, 236, 368
Hpy166II GTNNAC 1 cut(s) 518
Hpy188I TCNGA 4 cut(s) 305, 310, 384, 398
Hpy188III TCNNGA 4 cut(s) 109, 256, 376, 549
Hpy8I GTNNAC 1 cut(s) 518
Hpy99I CGWCG 2 cut(s) 17, 441
HpyAV CCTTC 1 cut(s) 93
HpyCH4V TGCA 3 cut(s) 176, 283, 475
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 319, 321, 333
HpyF3I CTNAG 1 cut(s) 197
Hsp92II CATG 6 cut(s) 112, 180, 322, 516, 533, 546
HspAI GCGC 5 cut(s) 79, 145, 313, 322, 391
Kzo9I GATC 6 cut(s) 9, 73, 149, 305, 361, 492
LmnI GCTCC 1 cut(s) 310
LpnPI CCDG 8 cut(s) 81, 182, 184, 249, 256, 361, 381, 476
Lsp1109I GCAGC 3 cut(s) 17, 160, 267
LweI GCATC 2 cut(s) 324, 402
MaeI CTAG 4 cut(s) 44, 158, 341, 521
MaeIII GTNAC 1 cut(s) 523
MalI GATC 6 cut(s) 11, 75, 151, 307, 363, 494
MboI GATC 6 cut(s) 9, 73, 149, 305, 361, 492
MboII GAAGA 4 cut(s) 73, 230, 464, 487
MflI RGATCY 2 cut(s) 73, 492
MhlI GDGCHC 1 cut(s) 252
MluCI AATT 1 cut(s) 119
MmeI TCCRAC 1 cut(s) 193
MseI TTAA 1 cut(s) 186
MspI CCGG 4 cut(s) 68, 169, 236, 368
MspR9I CCNGG 3 cut(s) 68, 170, 236
MvnI CGCG 1 cut(s) 145
MwoI GCNNNNNNNGC 4 cut(s) 14, 319, 321, 333
NciI CCSGG 3 cut(s) 68, 170, 236
NdeII GATC 6 cut(s) 9, 73, 149, 305, 361, 492
NlaIII CATG 6 cut(s) 112, 180, 322, 516, 533, 546
NlaIV GGNNCC 1 cut(s) 249
NsbI TGCGCA 1 cut(s) 392
NspI RCATGY 1 cut(s) 516
PagI TCATGA 1 cut(s) 108
PciI ACATGT 1 cut(s) 512
PfeI GAWTC 1 cut(s) 379
PflFI GACNNNGTC 1 cut(s) 458
PkrI GCNGC 5 cut(s) 7, 175, 282, 326, 509
Ple19I CGATCG 3 cut(s) 12, 308, 364
PscI ACATGT 1 cut(s) 512
PshBI ATTAAT 1 cut(s) 186
PspN4I GGNNCC 1 cut(s) 249
PsuI RGATCY 2 cut(s) 73, 492
PsyI GACNNNGTC 1 cut(s) 458
PvuI CGATCG 3 cut(s) 12, 308, 364
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 5 cut(s) 6, 174, 281, 325, 508
Sau3AI GATC 6 cut(s) 9, 73, 149, 305, 361, 492
ScrFI CCNGG 3 cut(s) 68, 170, 236
SduI GDGCHC 1 cut(s) 252
SetI ASST 3 cut(s) 249, 298, 424
SfaNI GCATC 2 cut(s) 324, 402
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
SpeI ACTAGT 1 cut(s) 520
Sse9I AATT 1 cut(s) 119
SsiI CCGC 4 cut(s) 28, 325, 433, 507
SspMI CTAG 4 cut(s) 44, 158, 341, 521
StyD4I CCNGG 3 cut(s) 66, 168, 234
StyI CCWWGG 2 cut(s) 87, 157
TaqI TCGA 3 cut(s) 12, 360, 450
TaqII GACCGA 1 cut(s) 488
TasI AATT 1 cut(s) 119
TauI GCSGC 2 cut(s) 327, 510
TfiI GAWTC 1 cut(s) 379
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TseI GCWGC 3 cut(s) 5, 173, 280
TspDTI ATGAA 1 cut(s) 97
Tth111I GACNNNGTC 1 cut(s) 458
VspI ATTAAT 1 cut(s) 186
XceI RCATGY 1 cut(s) 516
XmaJI CCTAGG 1 cut(s) 157
XspI CTAG 4 cut(s) 44, 158, 341, 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.