Rh5DG195500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000308
Physical Location & Seq
Forward (+)
21680555 .. 21680896
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG195500.1

Sequence Viewer

Length: 342 bp
ATGTCTGCATGCTCTTTCCTTCCTCAGAGGCCTCGACGTCAAGTCACCATCCGAAAAATTGAAGAAAACAATGAGCATGCATCTCCAATTACGGGGAAGAGGAGGAAAAGAACAAGTGATGTTTCGGTGTCTCCGAAGAAGCCAAGGCTGCGTTTGGCAATTGGTAAGCACAATATTGATGCTGCCACTATGGGTTTAATTGCACATGCTATGAGTAAGCCAAACAAGAAGAAGCGTGGTCGATCTGCTGGTAGTCTTAACAAGATGCCATATGGTACTGCTGGTAAGGAAAAAAAAAACTCCGAGGCAAGTAGTGAGAAGAAGAAAGGCGCCAAGGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.42

Weight (kDa)

11.13

Isoelectric Point (pI)

76.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 40
AccB1I GGYRCC 1 cut(s) 329
AcyI GRCGYC 2 cut(s) 37, 330
AfaI GTAC 1 cut(s) 277
AfiI CCNNNNNNNGG 1 cut(s) 92
AgsI TTSAA 1 cut(s) 62
AhdI GACNNNNNGTC 1 cut(s) 41
Alw26I GTCTC 1 cut(s) 135
AoxI GGCC 2 cut(s) 29, 336
ApeKI GCWGC 2 cut(s) 148, 182
AspLEI GCGC 1 cut(s) 332
AsuHPI GGTGA 1 cut(s) 37
BanI GGYRCC 1 cut(s) 329
BbvI GCAGC 2 cut(s) 135, 169
BccI CCATC 1 cut(s) 56
BcoDI GTCTC 1 cut(s) 135
BfoI RGCGCY 1 cut(s) 333
BisI GCNGC 2 cut(s) 149, 183
BlsI GCNGC 2 cut(s) 150, 184
BmeRI GACNNNNNGTC 1 cut(s) 41
BmiI GGNNCC 1 cut(s) 331
BmsI GCATC 3 cut(s) 89, 169, 255
BsaHI GRCGYC 2 cut(s) 37, 330
BsaJI CCNNGG 3 cut(s) 143, 303, 333
Bsc4I CCNNNNNNNGG 1 cut(s) 92
BseDI CCNNGG 3 cut(s) 143, 303, 333
BseGI GGATG 1 cut(s) 48
BseLI CCNNNNNNNGG 1 cut(s) 92
BseMII CTCAG 1 cut(s) 38
BseRI GAGGAG 1 cut(s) 115
BseXI GCAGC 2 cut(s) 135, 169
BshFI GGCC 2 cut(s) 31, 338
BshNI GGYRCC 1 cut(s) 329
BslI CCNNNNNNNGG 1 cut(s) 92
BsmAI GTCTC 1 cut(s) 135
BsnI GGCC 2 cut(s) 31, 338
Bsp143I GATC 1 cut(s) 242
BspANI GGCC 2 cut(s) 31, 338
BspCNI CTCAG 1 cut(s) 37
BspLI GGNNCC 1 cut(s) 331
BspT107I GGYRCC 1 cut(s) 329
BssECI CCNNGG 3 cut(s) 143, 303, 333
BssMI GATC 1 cut(s) 242
BssNI GRCGYC 2 cut(s) 37, 330
BssT1I CCWWGG 2 cut(s) 143, 333
Bst6I CTCTTC 1 cut(s) 92
BstACI GRCGYC 2 cut(s) 37, 330
BstC8I GCNNGC 2 cut(s) 10, 78
BstDEI CTNAG 1 cut(s) 24
BstF5I GGATG 1 cut(s) 48
BstH2I RGCGCY 1 cut(s) 333
BstHHI GCGC 1 cut(s) 332
BstKTI GATC 1 cut(s) 245
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 1 cut(s) 242
BstMWI GCNNNNNNNGC 1 cut(s) 148
BstNSI RCATGY 3 cut(s) 12, 80, 209
BstV1I GCAGC 2 cut(s) 135, 169
BsuRI GGCC 2 cut(s) 31, 338
BtsCI GGATG 1 cut(s) 48
Cac8I GCNNGC 2 cut(s) 10, 78
CfoI GCGC 1 cut(s) 332
Csp6I GTAC 1 cut(s) 276
CviAII CATG 3 cut(s) 9, 77, 206
CviJI RGCY 5 cut(s) 31, 142, 148, 220, 338
CviKI_1 RGCY 5 cut(s) 31, 142, 148, 220, 338
CviQI GTAC 1 cut(s) 276
DdeI CTNAG 1 cut(s) 24
DinI GGCGCC 1 cut(s) 331
DpnI GATC 1 cut(s) 244
DpnII GATC 1 cut(s) 242
DriI GACNNNNNGTC 1 cut(s) 41
Eam1104I CTCTTC 1 cut(s) 92
Eam1105I GACNNNNNGTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 92
Eco130I CCWWGG 2 cut(s) 143, 333
Eco147I AGGCCT 2 cut(s) 31, 338
EcoT14I CCWWGG 2 cut(s) 143, 333
EcoT22I ATGCAT 1 cut(s) 82
EgeI GGCGCC 1 cut(s) 331
EheI GGCGCC 1 cut(s) 331
ErhI CCWWGG 2 cut(s) 143, 333
FaeI CATG 3 cut(s) 12, 80, 209
FaiI YATR 7 cut(s) 10, 78, 191, 207, 212, 271, 273
FatI CATG 3 cut(s) 8, 76, 205
FauNDI CATATG 1 cut(s) 271
Fnu4HI GCNGC 2 cut(s) 149, 183
FokI GGATG 1 cut(s) 35
Fsp4HI GCNGC 2 cut(s) 149, 183
GlaI GCGC 1 cut(s) 331
GluI GCNGC 2 cut(s) 149, 183
HaeII RGCGCY 1 cut(s) 333
HaeIII GGCC 2 cut(s) 31, 338
HhaI GCGC 1 cut(s) 332
Hin1I GRCGYC 2 cut(s) 37, 330
Hin1II CATG 3 cut(s) 12, 80, 209
Hin6I GCGC 1 cut(s) 330
HinP1I GCGC 1 cut(s) 330
HphI GGTGA 1 cut(s) 37
Hpy188I TCNGA 4 cut(s) 27, 53, 135, 304
Hpy99I CGWCG 1 cut(s) 39
HpyAV CCTTC 1 cut(s) 29
HpyCH4IV ACGT 1 cut(s) 37
HpyCH4V TGCA 3 cut(s) 8, 80, 203
HpyF10VI GCNNNNNNNGC 1 cut(s) 148
HpyF3I CTNAG 1 cut(s) 24
HpySE526I ACGT 1 cut(s) 37
Hsp92I GRCGYC 2 cut(s) 37, 330
Hsp92II CATG 3 cut(s) 12, 80, 209
HspAI GCGC 1 cut(s) 330
KasI GGCGCC 1 cut(s) 329
Kzo9I GATC 1 cut(s) 242
LpnPI CCDG 2 cut(s) 234, 267
Lsp1109I GCAGC 2 cut(s) 135, 169
LweI GCATC 3 cut(s) 89, 169, 255
MaeII ACGT 1 cut(s) 37
MaeIII GTNAC 1 cut(s) 43
MalI GATC 1 cut(s) 244
MboI GATC 1 cut(s) 242
MboII GAAGA 6 cut(s) 74, 109, 148, 241, 331, 334
MfeI CAATTG 1 cut(s) 159
MluCI AATT 4 cut(s) 57, 87, 159, 198
Mly113I GGCGCC 1 cut(s) 330
MnlI CCTC 6 cut(s) 21, 33, 42, 93, 96, 298
Mph1103I ATGCAT 1 cut(s) 82
MseI TTAA 2 cut(s) 197, 258
MunI CAATTG 1 cut(s) 159
MwoI GCNNNNNNNGC 1 cut(s) 148
NarI GGCGCC 1 cut(s) 330
NdeI CATATG 1 cut(s) 271
NdeII GATC 1 cut(s) 242
NlaIII CATG 3 cut(s) 12, 80, 209
NlaIV GGNNCC 1 cut(s) 331
NmuCI GTSAC 1 cut(s) 43
NsiI ATGCAT 1 cut(s) 82
NspI RCATGY 3 cut(s) 12, 80, 209
PaeI GCATGC 2 cut(s) 12, 80
PceI AGGCCT 2 cut(s) 31, 338
PcsI WCGNNNNNNNCGW 1 cut(s) 131
PkrI GCNGC 2 cut(s) 150, 184
PluTI GGCGCC 1 cut(s) 333
PspN4I GGNNCC 1 cut(s) 331
RsaI GTAC 1 cut(s) 277
RsaNI GTAC 1 cut(s) 276
SaqAI TTAA 2 cut(s) 197, 258
SatI GCNGC 2 cut(s) 149, 183
Sau3AI GATC 1 cut(s) 242
SetI ASST 1 cut(s) 40
SfaNI GCATC 3 cut(s) 89, 169, 255
SfoI GGCGCC 1 cut(s) 331
SphI GCATGC 2 cut(s) 12, 80
Sse9I AATT 4 cut(s) 57, 87, 159, 198
SseBI AGGCCT 2 cut(s) 31, 338
SspDI GGCGCC 1 cut(s) 329
SspI AATATT 1 cut(s) 175
StuI AGGCCT 2 cut(s) 31, 338
StyI CCWWGG 2 cut(s) 143, 333
TaiI ACGT 1 cut(s) 40
TaqI TCGA 2 cut(s) 34, 241
TasI AATT 4 cut(s) 57, 87, 159, 198
Tru1I TTAA 2 cut(s) 197, 258
Tru9I TTAA 2 cut(s) 197, 258
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 2 cut(s) 148, 182
Tsp45I GTSAC 1 cut(s) 43
XceI RCATGY 3 cut(s) 12, 80, 209
ZraI GACGTC 1 cut(s) 38
Zsp2I ATGCAT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.