Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013801.1

Orthogroup ID

OG0000308

Physical Location & Seq

Genomic Coordinates Reverse (-)

12725 .. 13090

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013801.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

atggcctctattgatgcaatggcagcaagacttgcctcgtcccttgctattgcagaagggaaacgacctgtcgacctgcgtccatccaagggactgcgacaaccagaagttttcatgcttggaaaactattgactgcaagggagtatacacgccggtcgttcatgggaatgttcaagttcgcgtggagggttaatggcactcttcgtgtcgaggaagctagggaagatgacagagtcctgatttcatttacatatcggatggacaggactagggtttcgaagggcggcccttggggttttaatcgagctccgatcactttggcggaatatgatggtgtgagcccggtgctgtcagtaccgctgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

121

Amino Acids

13.62

Weight (kDa)

10.38

Isoelectric Point (pI)

43.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000308)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24891 FvH4_4g09031
rosa_multiflora	Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii	Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa	Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha	Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	84
AccI	GTMKAC	2 cut(s)	72, 146
AccII	CGCG	1 cut(s)	182
AciI	CCGC	3 cut(s)	285, 323, 359
AfaI	GTAC	1 cut(s)	357
AfiI	CCNNNNNNNGG	1 cut(s)	89
AgsI	TTSAA	1 cut(s)	175
AluBI	AGCT	2 cut(s)	218, 308
AluI	AGCT	2 cut(s)	218, 308
Alw21I	GWGCWC	1 cut(s)	310
AoxI	GGCC	2 cut(s)	3, 286
ApeKI	GCWGC	1 cut(s)	23
ArsI	GACNNNNNNTTYG	2 cut(s)	259, 291
AspS9I	GGNCC	1 cut(s)	287
AsuC2I	CCSGG	1 cut(s)	344
AsuII	TTCGAA	1 cut(s)	278
BanII	GRGCYC	2 cut(s)	310, 344
Bbv12I	GWGCWC	1 cut(s)	310
BbvI	GCAGC	1 cut(s)	35
BccI	CCATC	3 cut(s)	91, 253, 326
BcnI	CCSGG	1 cut(s)	344
BfaI	CTAG	2 cut(s)	219, 270
BfmI	CTRYAG	1 cut(s)	362
BfuAI	ACCTGC	1 cut(s)	84
BisI	GCNGC	2 cut(s)	24, 286
BlsI	GCNGC	2 cut(s)	25, 287
Bme1390I	CCNGG	1 cut(s)	344
BmgT120I	GGNCC	1 cut(s)	287
BmrFI	CCNGG	1 cut(s)	344
BmsI	GCATC	1 cut(s)	4
BoxI	GACNNNNGTC	1 cut(s)	78
Bpu14I	TTCGAA	1 cut(s)	278
BpuMI	CCSGG	1 cut(s)	344
BsaJI	CCNNGG	2 cut(s)	87, 290
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse118I	RCCGGY	1 cut(s)	153
Bse3DI	GCAATG	1 cut(s)	24
BseDI	CCNNGG	2 cut(s)	87, 290
BseGI	GGATG	2 cut(s)	83, 264
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseMI	GCAATG	1 cut(s)	24
BseXI	GCAGC	1 cut(s)	35
Bsh1236I	CGCG	1 cut(s)	182
Bsh1285I	CGRYCG	1 cut(s)	158
BshFI	GGCC	2 cut(s)	5, 288
BsiEI	CGRYCG	1 cut(s)	158
BsiHKAI	GWGCWC	1 cut(s)	310
BsiSI	CCGG	2 cut(s)	154, 344
BslFI	GGGAC	2 cut(s)	25, 105
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmFI	GGGAC	2 cut(s)	25, 105
BsnI	GGCC	2 cut(s)	5, 288
Bsp119I	TTCGAA	1 cut(s)	278
Bsp1286I	GDGCHC	2 cut(s)	310, 344
Bsp143I	GATC	1 cut(s)	312
BspACI	CCGC	3 cut(s)	285, 323, 359
BspANI	GGCC	2 cut(s)	5, 288
BspFNI	CGCG	1 cut(s)	182
BspMI	ACCTGC	1 cut(s)	84
BspT104I	TTCGAA	1 cut(s)	278
BsrDI	GCAATG	1 cut(s)	24
BsrFI	RCCGGY	1 cut(s)	153
BssAI	RCCGGY	1 cut(s)	153
BssECI	CCNNGG	2 cut(s)	87, 290
BssMI	GATC	1 cut(s)	312
BssNAI	GTATAC	1 cut(s)	147
BssT1I	CCWWGG	2 cut(s)	87, 290
Bst1107I	GTATAC	1 cut(s)	147
Bst6I	CTCTTC	1 cut(s)	207
BstAPI	GCANNNNNTGC	1 cut(s)	32
BstBI	TTCGAA	1 cut(s)	278
BstF5I	GGATG	2 cut(s)	83, 264
BstFNI	CGCG	1 cut(s)	182
BstKTI	GATC	1 cut(s)	315
BstMBI	GATC	1 cut(s)	312
BstMCI	CGRYCG	1 cut(s)	158
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 32
BstPAI	GACNNNNGTC	1 cut(s)	78
BstSCI	CCNGG	1 cut(s)	342
BstSFI	CTRYAG	1 cut(s)	362
BstUI	CGCG	1 cut(s)	182
BstV1I	GCAGC	1 cut(s)	35
BstZ17I	GTATAC	1 cut(s)	147
BsuRI	GGCC	2 cut(s)	5, 288
BtsCI	GGATG	2 cut(s)	83, 264
BveI	ACCTGC	1 cut(s)	84
Cfr10I	RCCGGY	1 cut(s)	153
Cfr13I	GGNCC	1 cut(s)	287
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	1 cut(s)	356
CviAII	CATG	2 cut(s)	115, 163
CviJI	RGCY	5 cut(s)	5, 218, 288, 308, 342
CviKI_1	RGCY	5 cut(s)	5, 218, 288, 308, 342
CviQI	GTAC	1 cut(s)	356
DpnI	GATC	1 cut(s)	314
DpnII	GATC	1 cut(s)	312
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
EciI	GGCGGA	1 cut(s)	338
Ecl136II	GAGCTC	1 cut(s)	308
Eco130I	CCWWGG	2 cut(s)	87, 290
Eco24I	GRGCYC	2 cut(s)	310, 344
Eco53kI	GAGCTC	1 cut(s)	308
EcoICRI	GAGCTC	1 cut(s)	308
EcoT14I	CCWWGG	2 cut(s)	87, 290
EcoT38I	GRGCYC	2 cut(s)	310, 344
ErhI	CCWWGG	2 cut(s)	87, 290
FaeI	CATG	2 cut(s)	118, 166
FaiI	YATR	5 cut(s)	116, 147, 164, 253, 330
FaqI	GGGAC	2 cut(s)	25, 105
FatI	CATG	2 cut(s)	114, 162
FblI	GTMKAC	2 cut(s)	72, 146
Fnu4HI	GCNGC	2 cut(s)	24, 286
FokI	GGATG	2 cut(s)	70, 271
FriOI	GRGCYC	2 cut(s)	310, 344
Fsp4HI	GCNGC	2 cut(s)	24, 286
FspBI	CTAG	2 cut(s)	219, 270
GluI	GCNGC	2 cut(s)	24, 286
HaeIII	GGCC	2 cut(s)	5, 288
HapII	CCGG	2 cut(s)	154, 344
HgaI	GACGC	1 cut(s)	68
Hin1II	CATG	2 cut(s)	118, 166
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HinfI	GANTC	1 cut(s)	234
HpaII	CCGG	2 cut(s)	154, 344
Hpy166II	GTNNAC	2 cut(s)	73, 147
Hpy188I	TCNGA	2 cut(s)	258, 312
Hpy188III	TCNNGA	1 cut(s)	238
Hpy8I	GTNNAC	2 cut(s)	73, 147
HpyAV	CCTTC	2 cut(s)	50, 274
HpyCH4V	TGCA	3 cut(s)	17, 53, 137
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 32
Hsp92II	CATG	2 cut(s)	118, 166
Kzo9I	GATC	1 cut(s)	312
LmnI	GCTCC	1 cut(s)	313
LpnPI	CCDG	7 cut(s)	81, 89, 117, 167, 250, 251, 357
Lsp1109I	GCAGC	1 cut(s)	35
LweI	GCATC	1 cut(s)	4
MaeI	CTAG	2 cut(s)	219, 270
MalI	GATC	1 cut(s)	314
MboI	GATC	1 cut(s)	312
MboII	GAAGA	2 cut(s)	194, 236
MhlI	GDGCHC	2 cut(s)	310, 344
MlyI	GAGTC	1 cut(s)	243
MnlI	CCTC	4 cut(s)	16, 46, 180, 205
MseI	TTAA	2 cut(s)	192, 300
MslI	CAYNNNNRTG	1 cut(s)	167
MspA1I	CMGCKG	1 cut(s)	361
MspI	CCGG	2 cut(s)	154, 344
MspR9I	CCNGG	1 cut(s)	344
MvnI	CGCG	1 cut(s)	182
MwoI	GCNNNNNNNGC	2 cut(s)	23, 32
NciI	CCSGG	1 cut(s)	344
NdeII	GATC	1 cut(s)	312
NlaIII	CATG	2 cut(s)	118, 166
NspV	TTCGAA	1 cut(s)	278
PflFI	GACNNNGTC	1 cut(s)	233
PkrI	GCNGC	2 cut(s)	25, 287
PleI	GAGTC	1 cut(s)	242
PpsI	GAGTC	1 cut(s)	242
PshAI	GACNNNNGTC	1 cut(s)	78
Psp124BI	GAGCTC	1 cut(s)	310
PspPI	GGNCC	1 cut(s)	287
PsyI	GACNNNGTC	1 cut(s)	233
RsaI	GTAC	1 cut(s)	357
RsaNI	GTAC	1 cut(s)	356
RseI	CAYNNNNRTG	1 cut(s)	167
SacI	GAGCTC	1 cut(s)	310
SalI	GTCGAC	1 cut(s)	71
SaqAI	TTAA	2 cut(s)	192, 300
SatI	GCNGC	2 cut(s)	24, 286
Sau3AI	GATC	1 cut(s)	312
Sau96I	GGNCC	1 cut(s)	287
SchI	GAGTC	1 cut(s)	243
ScrFI	CCNGG	1 cut(s)	344
SduI	GDGCHC	2 cut(s)	310, 344
SetI	ASST	4 cut(s)	70, 78, 220, 310
SfaNI	GCATC	1 cut(s)	4
SfcI	CTRYAG	1 cut(s)	362
SfuI	TTCGAA	1 cut(s)	278
SmiMI	CAYNNNNRTG	1 cut(s)	167
SsiI	CCGC	3 cut(s)	285, 323, 359
SspMI	CTAG	2 cut(s)	219, 270
SstI	GAGCTC	1 cut(s)	310
StyD4I	CCNGG	1 cut(s)	342
StyI	CCWWGG	2 cut(s)	87, 290
TaqI	TCGA	4 cut(s)	72, 210, 278, 304
TauI	GCSGC	1 cut(s)	288
Tru1I	TTAA	2 cut(s)	192, 300
Tru9I	TTAA	2 cut(s)	192, 300
TseI	GCWGC	1 cut(s)	23
TspDTI	ATGAA	3 cut(s)	103, 151, 234
Tth111I	GACNNNGTC	1 cut(s)	233
XmiI	GTMKAC	2 cut(s)	72, 146
XspI	CTAG	2 cut(s)	219, 270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.