Rmu_sc0008044.1_g000001

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008044.1
OG0000308
Physical Location & Seq
Forward (+)
1269 .. 2702
1434 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008044.1_g000001.1.cds

Sequence Viewer

Length: 906 bp
atggcaattgatgcaatggcagtccgcttggcctcctccctagcgttggctgatggcaagcaaccggtggatttgcgtccatcaaaaggattgagacaacctgaagcattcatggtaggaaagctactcacggcacgggaatattctcgtcgctctttccttggcctgtttcgatctgcatggagaatcaatggcagattgaatgttgaagaactcggagaagatgatagggtcttgttcacttttacagacccttcggatgtgaatagggtttggaaaggaggaccatggggatataaccgggctcttatagccttagcaccgtatgacagtgtcagtccggcaagggagatcccactgaagaaatcatcatattggatgacactgcaaggagtgccaccggccttcagatcccaacggattatgcgactgattgggagtaccctaggcgagttcatggcatggaagttgatcgccccgcctttcggacgcgagttttgctcattagggtcgagatcgattatgtcaaacctctcctgtttcgtcaacgtttcagggtggaagatgaagtccagtcatgggccggatctggaagaagaccgtgacatacctgttggcacggtggagcaacccacggctttagccgtattacggggactggaaaaccctaatgtcaataggggacctccgaacaataatgatcaacttaagagaaagagaggacgtcctgttggaagtgtgaacaagctgccatatggaacagcaggaaaaggaagaaaaaaggatggagaacaagaaaagataaagagcaaaaagaccaacctgatgccgaggttgttagctgctgatgaacctgaaacaagcaccaactctaaccctaaggggaaagagcaagtgcttgcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

301

Amino Acids

33.35

Weight (kDa)

10.0

Isoelectric Point (pI)

47.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 727
AccII CGCG 1 cut(s) 492
AciI CCGC 2 cut(s) 25, 479
AclI AACGTT 1 cut(s) 549
AclWI GGATC 3 cut(s) 346, 405, 594
AcuI CTGAAG 3 cut(s) 123, 380, 391
AcyI GRCGYC 1 cut(s) 724
AfaI GTAC 1 cut(s) 442
AfiI CCNNNNNNNGG 5 cut(s) 46, 86, 485, 579, 651
AflII CTTAAG 1 cut(s) 707
AgeI ACCGGT 1 cut(s) 64
AgsI TTSAA 2 cut(s) 202, 209
AluBI AGCT 3 cut(s) 124, 748, 842
AluI AGCT 3 cut(s) 124, 748, 842
Alw26I GTCTC 1 cut(s) 88
AlwI GGATC 3 cut(s) 346, 405, 594
AoxI GGCC 4 cut(s) 30, 163, 402, 581
ApeKI GCWGC 2 cut(s) 748, 842
ArsI GACNNNNNNTTYG 2 cut(s) 480, 512
AsiGI ACCGGT 1 cut(s) 64
AspA2I CCTAGG 1 cut(s) 445
AspS9I GGNCC 3 cut(s) 284, 581, 683
AsuC2I CCSGG 1 cut(s) 302
AvaII GGWCC 2 cut(s) 284, 683
AvrII CCTAGG 1 cut(s) 445
AxyI CCTNAGG 1 cut(s) 879
BanII GRGCYC 1 cut(s) 307
BbsI GAAGAC 1 cut(s) 603
BbvI GCAGC 2 cut(s) 735, 829
BccI CCATC 3 cut(s) 47, 88, 779
BceAI ACGGC 3 cut(s) 147, 629, 651
BclI TGATCA 1 cut(s) 700
BcnI CCSGG 1 cut(s) 302
BcoDI GTCTC 1 cut(s) 88
BfaI CTAG 2 cut(s) 41, 446
BfrI CTTAAG 1 cut(s) 707
BisI GCNGC 2 cut(s) 749, 843
BlnI CCTAGG 1 cut(s) 445
BlsI GCNGC 2 cut(s) 750, 844
Bme1390I CCNGG 1 cut(s) 302
Bme18I GGWCC 2 cut(s) 284, 683
BmgT120I GGNCC 3 cut(s) 284, 581, 683
BmiI GGNNCC 1 cut(s) 684
BmrFI CCNGG 1 cut(s) 302
BmsI GCATC 1 cut(s) 816
BpiI GAAGAC 1 cut(s) 603
BplI GAGNNNNNCTC 2 cut(s) 485, 517
Bpu10I CCTNAGC 1 cut(s) 316
BpuMI CCSGG 1 cut(s) 302
Bsa29I ATCGAT 1 cut(s) 518
BsaHI GRCGYC 1 cut(s) 724
BsaJI CCNNGG 5 cut(s) 160, 287, 445, 633, 830
BsaWI WCCGGW 1 cut(s) 64
Bsc4I CCNNNNNNNGG 5 cut(s) 46, 86, 485, 579, 651
Bse118I RCCGGY 2 cut(s) 64, 400
Bse1I ACTGG 2 cut(s) 573, 663
Bse21I CCTNAGG 1 cut(s) 879
Bse3DI GCAATG 1 cut(s) 21
BseCI ATCGAT 1 cut(s) 518
BseDI CCNNGG 5 cut(s) 160, 287, 445, 633, 830
BseGI GGATG 3 cut(s) 265, 384, 790
BseLI CCNNNNNNNGG 5 cut(s) 46, 86, 485, 579, 651
BseMI GCAATG 1 cut(s) 21
BseNI ACTGG 2 cut(s) 573, 663
BseRI GAGGAG 1 cut(s) 25
BseXI GCAGC 2 cut(s) 735, 829
Bsh1236I CGCG 1 cut(s) 492
BshFI GGCC 4 cut(s) 32, 165, 404, 583
BshTI ACCGGT 1 cut(s) 64
BshVI ATCGAT 1 cut(s) 518
BsiSI CCGG 5 cut(s) 65, 301, 341, 401, 584
BslFI GGGAC 2 cut(s) 669, 696
BslI CCNNNNNNNGG 5 cut(s) 46, 86, 485, 579, 651
BsmAI GTCTC 1 cut(s) 88
BsmFI GGGAC 2 cut(s) 669, 696
BsmI GAATGC 1 cut(s) 107
BsnI GGCC 4 cut(s) 32, 165, 404, 583
Bsp1286I GDGCHC 1 cut(s) 307
Bsp143I GATC 7 cut(s) 173, 351, 410, 471, 515, 586, 700
Bsp19I CCATGG 1 cut(s) 287
BspACI CCGC 2 cut(s) 25, 479
BspANI GGCC 4 cut(s) 32, 165, 404, 583
BspDI ATCGAT 1 cut(s) 518
BspFNI CGCG 1 cut(s) 492
BspLI GGNNCC 1 cut(s) 684
BspPI GGATC 3 cut(s) 346, 405, 594
BspTI CTTAAG 1 cut(s) 707
BsrDI GCAATG 1 cut(s) 21
BsrFI RCCGGY 2 cut(s) 64, 400
BsrI ACTGG 2 cut(s) 573, 663
BssAI RCCGGY 2 cut(s) 64, 400
BssECI CCNNGG 5 cut(s) 160, 287, 445, 633, 830
BssMI GATC 7 cut(s) 173, 351, 410, 471, 515, 586, 700
BssNI GRCGYC 1 cut(s) 724
BssT1I CCWWGG 3 cut(s) 160, 287, 445
Bst4CI ACNGT 4 cut(s) 324, 332, 602, 622
BstACI GRCGYC 1 cut(s) 724
BstAFI CTTAAG 1 cut(s) 707
BstAPI GCANNNNNTGC 2 cut(s) 11, 394
BstC8I GCNNGC 2 cut(s) 59, 900
BstDEI CTNAG 2 cut(s) 316, 879
BstDSI CCRYGG 2 cut(s) 287, 633
BstF5I GGATG 3 cut(s) 265, 384, 790
BstFNI CGCG 1 cut(s) 492
BstKTI GATC 7 cut(s) 176, 354, 413, 474, 518, 589, 703
BstMAI GTCTC 1 cut(s) 88
BstMBI GATC 7 cut(s) 173, 351, 410, 471, 515, 586, 700
BstMWI GCNNNNNNNGC 4 cut(s) 11, 311, 394, 498
BstSCI CCNGG 1 cut(s) 300
BstUI CGCG 1 cut(s) 492
BstV1I GCAGC 2 cut(s) 735, 829
BstV2I GAAGAC 1 cut(s) 603
BstX2I RGATCY 3 cut(s) 351, 410, 586
BstYI RGATCY 3 cut(s) 351, 410, 586
Bsu15I ATCGAT 1 cut(s) 518
Bsu36I CCTNAGG 1 cut(s) 879
BsuRI GGCC 4 cut(s) 32, 165, 404, 583
BsuTUI ATCGAT 1 cut(s) 518
BtgI CCRYGG 2 cut(s) 287, 633
BtsCI GGATG 3 cut(s) 265, 384, 790
BtsI GCAGTG 1 cut(s) 383
BtsIMutI CAGTG 3 cut(s) 337, 356, 383
Cac8I GCNNGC 2 cut(s) 59, 900
Cfr10I RCCGGY 2 cut(s) 64, 400
Cfr13I GGNCC 3 cut(s) 284, 581, 683
ClaI ATCGAT 1 cut(s) 518
CseI GACGC 2 cut(s) 65, 498
Csp6I GTAC 1 cut(s) 441
CspAI ACCGGT 1 cut(s) 64
CviAII CATG 6 cut(s) 112, 180, 288, 457, 462, 578
CviQI GTAC 1 cut(s) 441
DdeI CTNAG 2 cut(s) 316, 879
DpnI GATC 7 cut(s) 175, 353, 412, 473, 517, 588, 702
DpnII GATC 7 cut(s) 173, 351, 410, 471, 515, 586, 700
Eco130I CCWWGG 3 cut(s) 160, 287, 445
Eco24I GRGCYC 1 cut(s) 307
Eco47I GGWCC 2 cut(s) 284, 683
Eco57I CTGAAG 3 cut(s) 123, 380, 391
Eco81I CCTNAGG 1 cut(s) 879
EcoO109I RGGNCCY 1 cut(s) 683
EcoT14I CCWWGG 3 cut(s) 160, 287, 445
EcoT38I GRGCYC 1 cut(s) 307
ErhI CCWWGG 3 cut(s) 160, 287, 445
FaeI CATG 6 cut(s) 115, 183, 291, 460, 465, 581
FaqI GGGAC 2 cut(s) 669, 696
FatI CATG 6 cut(s) 111, 179, 287, 456, 461, 577
FauI CCCGC 1 cut(s) 486
FauNDI CATATG 1 cut(s) 754
FbaI TGATCA 1 cut(s) 700
Fnu4HI GCNGC 2 cut(s) 749, 843
FokI GGATG 3 cut(s) 272, 391, 797
FriOI GRGCYC 1 cut(s) 307
Fsp4HI GCNGC 2 cut(s) 749, 843
FspBI CTAG 2 cut(s) 41, 446
GluI GCNGC 2 cut(s) 749, 843
HaeIII GGCC 4 cut(s) 32, 165, 404, 583
HapII CCGG 5 cut(s) 65, 301, 341, 401, 584
HgaI GACGC 2 cut(s) 65, 498
Hin1I GRCGYC 1 cut(s) 724
Hin1II CATG 6 cut(s) 115, 183, 291, 460, 465, 581
HincII GTYRAC 1 cut(s) 547
HindII GTYRAC 1 cut(s) 547
HinfI GANTC 1 cut(s) 186
HpaII CCGG 5 cut(s) 65, 301, 341, 401, 584
Hpy166II GTNNAC 3 cut(s) 240, 547, 742
Hpy188I TCNGA 5 cut(s) 218, 259, 410, 488, 690
Hpy188III TCNNGA 2 cut(s) 513, 590
Hpy8I GTNNAC 3 cut(s) 240, 547, 742
Hpy99I CGWCG 1 cut(s) 153
HpyAV CCTTC 2 cut(s) 264, 415
HpyCH4III ACNGT 4 cut(s) 324, 332, 602, 622
HpyCH4IV ACGT 2 cut(s) 549, 724
HpyCH4V TGCA 3 cut(s) 14, 179, 388
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 311, 394, 498
HpyF3I CTNAG 2 cut(s) 316, 879
HpySE526I ACGT 2 cut(s) 549, 724
Hsp92I GRCGYC 1 cut(s) 724
Hsp92II CATG 6 cut(s) 115, 183, 291, 460, 465, 581
Ksp22I TGATCA 1 cut(s) 700
Kzo9I GATC 7 cut(s) 173, 351, 410, 471, 515, 586, 700
LmnI GCTCC 1 cut(s) 625
Lsp1109I GCAGC 2 cut(s) 735, 829
LweI GCATC 1 cut(s) 816
MaeI CTAG 2 cut(s) 41, 446
MaeII ACGT 2 cut(s) 549, 724
MaeIII GTNAC 1 cut(s) 602
MalI GATC 7 cut(s) 175, 353, 412, 473, 517, 588, 702
MboI GATC 7 cut(s) 173, 351, 410, 471, 515, 586, 700
MboII GAAGA 7 cut(s) 221, 233, 373, 574, 605, 608, 786
MfeI CAATTG 1 cut(s) 6
MflI RGATCY 3 cut(s) 351, 410, 586
MhlI GDGCHC 1 cut(s) 307
MluCI AATT 1 cut(s) 6
MmeI TCCRAC 1 cut(s) 712
MnlI CCTC 7 cut(s) 43, 46, 275, 542, 696, 713, 825
MseI TTAA 2 cut(s) 708, 904
MspCI CTTAAG 1 cut(s) 707
MspI CCGG 5 cut(s) 65, 301, 341, 401, 584
MspR9I CCNGG 1 cut(s) 302
MunI CAATTG 1 cut(s) 6
Mva1269I GAATGC 1 cut(s) 107
MvnI CGCG 1 cut(s) 492
MwoI GCNNNNNNNGC 4 cut(s) 11, 311, 394, 498
NciI CCSGG 1 cut(s) 302
NcoI CCATGG 1 cut(s) 287
NdeI CATATG 1 cut(s) 754
NdeII GATC 7 cut(s) 173, 351, 410, 471, 515, 586, 700
NlaIII CATG 6 cut(s) 115, 183, 291, 460, 465, 581
NlaIV GGNNCC 1 cut(s) 684
NmeAIII GCCGAG 1 cut(s) 855
NmuCI GTSAC 1 cut(s) 602
PcsI WCGNNNNNNNCGW 1 cut(s) 424
PctI GAATGC 1 cut(s) 107
PfeI GAWTC 1 cut(s) 186
PflFI GACNNNGTC 1 cut(s) 332
PinAI ACCGGT 1 cut(s) 64
PkrI GCNGC 2 cut(s) 750, 844
PpuMI RGGWCCY 1 cut(s) 683
Psp1406I AACGTT 1 cut(s) 549
Psp5II RGGWCCY 1 cut(s) 683
PspN4I GGNNCC 1 cut(s) 684
PspPI GGNCC 3 cut(s) 284, 581, 683
PspPPI RGGWCCY 1 cut(s) 683
PsuI RGATCY 3 cut(s) 351, 410, 586
PsyI GACNNNGTC 1 cut(s) 332
RsaI GTAC 1 cut(s) 442
RsaNI GTAC 1 cut(s) 441
SaqAI TTAA 2 cut(s) 708, 904
SatI GCNGC 2 cut(s) 749, 843
Sau3AI GATC 7 cut(s) 173, 351, 410, 471, 515, 586, 700
Sau96I GGNCC 3 cut(s) 284, 581, 683
ScrFI CCNGG 1 cut(s) 302
SduI GDGCHC 1 cut(s) 307
SfaNI GCATC 1 cut(s) 816
SinI GGWCC 2 cut(s) 284, 683
SmlI CTYRAG 1 cut(s) 707
SmoI CTYRAG 1 cut(s) 707
Sse9I AATT 1 cut(s) 6
SsiI CCGC 2 cut(s) 25, 479
SspI AATATT 1 cut(s) 143
SspMI CTAG 2 cut(s) 41, 446
StyD4I CCNGG 1 cut(s) 300
StyI CCWWGG 3 cut(s) 160, 287, 445
TaaI ACNGT 4 cut(s) 324, 332, 602, 622
TaiI ACGT 2 cut(s) 552, 727
TaqI TCGA 3 cut(s) 172, 512, 518
TasI AATT 1 cut(s) 6
TfiI GAWTC 1 cut(s) 186
Tru1I TTAA 2 cut(s) 708, 904
Tru9I TTAA 2 cut(s) 708, 904
TscAI CASTG 3 cut(s) 337, 363, 390
TseFI GTSAC 1 cut(s) 602
TseI GCWGC 2 cut(s) 748, 842
Tsp45I GTSAC 1 cut(s) 602
TspDTI ATGAA 4 cut(s) 100, 445, 581, 864
TspGWI ACGGA 1 cut(s) 433
TspRI CASTG 3 cut(s) 337, 363, 390
Tth111I GACNNNGTC 1 cut(s) 332
Vha464I CTTAAG 1 cut(s) 707
VpaK11BI GGWCC 2 cut(s) 284, 683
XmaJI CCTAGG 1 cut(s) 445
XspI CTAG 2 cut(s) 41, 446
ZraI GACGTC 1 cut(s) 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.