Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8303129.1

Orthogroup ID

OG0000308

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 307

Gene Structure 306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8303129.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

atggcaacaattgatgcaatgacagcctgcctggcctcctccttagctttggctgatgggaagaaacctgtggatttgcgtccttccaaagggttgagacaacccgaaaccttcattggaaaactgctcactgcgtcggaatactcgcgtcgatcttttctgggaatgttccggtcggcatggcggatcaatggaagactgagtgtcgatgagatcagagaagatgacagggtcttgttcaccttcactgacccatctgatgtggacagagtgtggaaaggaggaccctggggatacaatagagct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

102

Amino Acids

11.45

Weight (kDa)

9.35

Isoelectric Point (pI)

45.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000308)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24891 FvH4_4g09031
rosa_multiflora	Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii	Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa	Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha	Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	148
AciI	CCGC	1 cut(s)	184
AclWI	GGATC	1 cut(s)	194
AfiI	CCNNNNNNNGG	1 cut(s)	89
AhdI	GACNNNNNGTC	1 cut(s)	203
AjnI	CCWGG	2 cut(s)	30, 287
AjuI	GAANNNNNNNTTGG	2 cut(s)	99, 131
AluBI	AGCT	2 cut(s)	47, 305
AluI	AGCT	2 cut(s)	47, 305
Alw26I	GTCTC	1 cut(s)	91
AlwI	GGATC	1 cut(s)	194
AoxI	GGCC	1 cut(s)	33
AspS9I	GGNCC	1 cut(s)	284
AsuHPI	GGTGA	1 cut(s)	232
AvaII	GGWCC	1 cut(s)	284
BbsI	GAAGAC	1 cut(s)	202
BccI	CCATC	2 cut(s)	50, 262
BciT130I	CCWGG	2 cut(s)	32, 289
BciVI	GTATCC	1 cut(s)	287
BcoDI	GTCTC	1 cut(s)	91
BfuI	GTATCC	1 cut(s)	287
BglI	GCCNNNNNGGC	1 cut(s)	32
Bme1390I	CCNGG	2 cut(s)	32, 289
Bme18I	GGWCC	1 cut(s)	284
BmeRI	GACNNNNNGTC	1 cut(s)	203
BmgT120I	GGNCC	1 cut(s)	284
BmiI	GGNNCC	1 cut(s)	286
BmrFI	CCNGG	2 cut(s)	32, 289
BmsI	GCATC	1 cut(s)	4
BpiI	GAAGAC	1 cut(s)	202
Bpu10I	CCTNAGC	1 cut(s)	43
BsaJI	CCNNGG	2 cut(s)	287, 288
BsaWI	WCCGGW	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse3DI	GCAATG	1 cut(s)	24
BseBI	CCWGG	2 cut(s)	32, 289
BseDI	CCNNGG	2 cut(s)	287, 288
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseMI	GCAATG	1 cut(s)	24
BseMII	CTCAG	1 cut(s)	191
BseRI	GAGGAG	1 cut(s)	28
Bsh1236I	CGCG	1 cut(s)	148
Bsh1285I	CGRYCG	1 cut(s)	176
BshFI	GGCC	1 cut(s)	35
BsiEI	CGRYCG	1 cut(s)	176
BsiSI	CCGG	1 cut(s)	172
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmAI	GTCTC	1 cut(s)	91
BsnI	GGCC	1 cut(s)	35
Bsp143I	GATC	3 cut(s)	152, 186, 213
BspACI	CCGC	1 cut(s)	184
BspANI	GGCC	1 cut(s)	35
BspCNI	CTCAG	1 cut(s)	192
BspFNI	CGCG	1 cut(s)	148
BspLI	GGNNCC	1 cut(s)	286
BspPI	GGATC	1 cut(s)	194
BsrDI	GCAATG	1 cut(s)	24
BssECI	CCNNGG	2 cut(s)	287, 288
BssMI	GATC	3 cut(s)	152, 186, 213
Bst2UI	CCWGG	2 cut(s)	32, 289
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	2 cut(s)	43, 200
BstENI	CCTNNNNNAGG	1 cut(s)	87
BstFNI	CGCG	1 cut(s)	148
BstKTI	GATC	3 cut(s)	155, 189, 216
BstMAI	GTCTC	1 cut(s)	91
BstMBI	GATC	3 cut(s)	152, 186, 213
BstMCI	CGRYCG	1 cut(s)	176
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 32
BstNI	CCWGG	2 cut(s)	32, 289
BstSCI	CCNGG	2 cut(s)	30, 287
BstUI	CGCG	1 cut(s)	148
BstV2I	GAAGAC	1 cut(s)	202
BsuI	GTATCC	1 cut(s)	287
BsuRI	GGCC	1 cut(s)	35
BtsI	GCAGTG	1 cut(s)	129
BtsIMutI	CAGTG	2 cut(s)	129, 246
Cac8I	GCNNGC	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	284
CseI	GACGC	3 cut(s)	68, 123, 137
CviAII	CATG	1 cut(s)	180
CviJI	RGCY	5 cut(s)	26, 35, 47, 53, 305
CviKI_1	RGCY	5 cut(s)	26, 35, 47, 53, 305
DdeI	CTNAG	2 cut(s)	43, 200
DpnI	GATC	3 cut(s)	154, 188, 215
DpnII	GATC	3 cut(s)	152, 186, 213
DriI	GACNNNNNGTC	1 cut(s)	203
Eam1105I	GACNNNNNGTC	1 cut(s)	203
EciI	GGCGGA	1 cut(s)	199
Eco47I	GGWCC	1 cut(s)	284
EcoNI	CCTNNNNNAGG	1 cut(s)	87
EcoO109I	RGGNCCY	1 cut(s)	284
EcoRII	CCWGG	2 cut(s)	30, 287
FaeI	CATG	1 cut(s)	183
FaiI	YATR	1 cut(s)	181
FatI	CATG	1 cut(s)	179
HaeIII	GGCC	1 cut(s)	35
HapII	CCGG	1 cut(s)	172
HgaI	GACGC	3 cut(s)	68, 123, 137
Hin1II	CATG	1 cut(s)	183
HpaII	CCGG	1 cut(s)	172
HphI	GGTGA	1 cut(s)	232
Hpy166II	GTNNAC	2 cut(s)	240, 265
Hpy188I	TCNGA	3 cut(s)	139, 218, 259
Hpy8I	GTNNAC	2 cut(s)	240, 265
Hpy99I	CGWCG	2 cut(s)	139, 153
HpyAV	CCTTC	3 cut(s)	93, 121, 253
HpyCH4V	TGCA	1 cut(s)	17
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 32
HpyF3I	CTNAG	2 cut(s)	43, 200
Hsp92II	CATG	1 cut(s)	183
Kzo9I	GATC	3 cut(s)	152, 186, 213
LpnPI	CCDG	9 cut(s)	17, 40, 44, 81, 146, 185, 214, 274, 301
LweI	GCATC	1 cut(s)	4
MalI	GATC	3 cut(s)	154, 188, 215
MboI	GATC	3 cut(s)	152, 186, 213
MboII	GAAGA	3 cut(s)	73, 207, 233
MfeI	CAATTG	1 cut(s)	9
MluCI	AATT	1 cut(s)	9
MmeI	TCCRAC	1 cut(s)	117
MnlI	CCTC	3 cut(s)	46, 49, 275
MspI	CCGG	1 cut(s)	172
MspR9I	CCNGG	2 cut(s)	32, 289
MunI	CAATTG	1 cut(s)	9
MvaI	CCWGG	2 cut(s)	32, 289
MvnI	CGCG	1 cut(s)	148
MwoI	GCNNNNNNNGC	2 cut(s)	23, 32
NdeII	GATC	3 cut(s)	152, 186, 213
NlaIII	CATG	1 cut(s)	183
NlaIV	GGNNCC	1 cut(s)	286
PasI	CCCWGGG	1 cut(s)	288
PflFI	GACNNNGTC	1 cut(s)	230
PpuMI	RGGWCCY	1 cut(s)	284
Psp5II	RGGWCCY	1 cut(s)	284
Psp6I	CCWGG	2 cut(s)	30, 287
PspGI	CCWGG	2 cut(s)	30, 287
PspN4I	GGNNCC	1 cut(s)	286
PspPI	GGNCC	1 cut(s)	284
PspPPI	RGGWCCY	1 cut(s)	284
PsyI	GACNNNGTC	1 cut(s)	230
Sau3AI	GATC	3 cut(s)	152, 186, 213
Sau96I	GGNCC	1 cut(s)	284
ScrFI	CCNGG	2 cut(s)	32, 289
SetI	ASST	4 cut(s)	49, 70, 113, 245
SfaNI	GCATC	1 cut(s)	4
SinI	GGWCC	1 cut(s)	284
Sse9I	AATT	1 cut(s)	9
SsiI	CCGC	1 cut(s)	184
StyD4I	CCNGG	2 cut(s)	30, 287
TaqI	TCGA	2 cut(s)	151, 207
TasI	AATT	1 cut(s)	9
TscAI	CASTG	2 cut(s)	136, 253
TspDTI	ATGAA	1 cut(s)	103
TspRI	CASTG	2 cut(s)	136, 253
Tth111I	GACNNNGTC	1 cut(s)	230
VpaK11BI	GGWCC	1 cut(s)	284
XagI	CCTNNNNNAGG	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.