Rmu_sc0010560.1_g000005

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010560.1
OG0000308
Physical Location & Seq
Forward (+)
23238 .. 24337
1100 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010560.1_g000005.1.cds

Sequence Viewer

Length: 708 bp
atgttccggtcggcatggcagatcaatggcagactgagtgtcgacgagatcggagatgatgacagggtcttattcaccttcattgacccatctgatgtggatagagtgtggaaaggaggaccctggggatacaatagagctccaatagccctagctctatatgatggcgtcactccggcagcagatgtgcccctgaagaaatcatcctactggatgactttgcaaggagtaccgctggtgttccgagtcgagattgattatgagaagcctctactctttcgtcagcgattcttggtagaagacaaagtccagattttggtgcaattctggtatgacaaactctttggtcgctgcggaacttgtggattagtcactcatgtcggccttccctgctcaaggccggaactggttgaagaaagtttgagtcttgctattgggaagaaaaatttggatgtagtgaatatggggttgttagagggaacttcaagcaataaggaacaaactaaaaggaagagaagatgccccattggcagtgtgaataagctaccatatggaacagctggaaaaggaaaaaatgcaaagaaagaaggagaatcagaaaaagcaaagagcaagaagaagaacctgatgccgaggttgttatctgctgatgagtctgggacaagcactagctctaaccctaaggggaaagagcaggtgcatgcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 ko04934 ko05202 map00310 map04934 map05202
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4

Protein Analysis

235

Amino Acids

26.19

Weight (kDa)

9.34

Isoelectric Point (pI)

33.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 685
Acc36I ACCTGC 1 cut(s) 685
AccB7I CCANNNNNTGG 1 cut(s) 316
AccI GTMKAC 1 cut(s) 42
AciI CCGC 2 cut(s) 233, 354
AcsI RAATTY 1 cut(s) 445
AcuI CTGAAG 1 cut(s) 215
AcyI GRCGYC 1 cut(s) 168
AfaI GTAC 1 cut(s) 231
AfiI CCNNNNNNNGG 2 cut(s) 316, 396
AgsI TTSAA 2 cut(s) 413, 486
AhdI GACNNNNNGTC 1 cut(s) 38
AjnI CCWGG 1 cut(s) 122
AjuI GAANNNNNNNTTGG 2 cut(s) 431, 463
AluBI AGCT 5 cut(s) 140, 155, 544, 560, 672
AluI AGCT 5 cut(s) 140, 155, 544, 560, 672
Alw21I GWGCWC 1 cut(s) 142
AoxI GGCC 2 cut(s) 382, 398
ApeKI GCWGC 2 cut(s) 179, 351
ApoI RAATTY 1 cut(s) 445
ArsI GACNNNNNNTTYG 2 cut(s) 326, 358
AspS9I GGNCC 1 cut(s) 119
AsuHPI GGTGA 1 cut(s) 67
AvaII GGWCC 1 cut(s) 119
AxyI CCTNAGG 1 cut(s) 681
BaeGI GKGCMC 1 cut(s) 192
BanII GRGCYC 1 cut(s) 142
BbsI GAAGAC 1 cut(s) 306
Bbv12I GWGCWC 1 cut(s) 142
BbvI GCAGC 2 cut(s) 191, 338
BccI CCATC 2 cut(s) 97, 158
BciT130I CCWGG 1 cut(s) 124
BciVI GTATCC 1 cut(s) 122
BfaI CTAG 2 cut(s) 152, 669
BfuAI ACCTGC 1 cut(s) 685
BfuI GTATCC 1 cut(s) 122
BglI GCCNNNNNGGC 1 cut(s) 528
BisI GCNGC 2 cut(s) 180, 352
BlsI GCNGC 2 cut(s) 181, 353
Bme1390I CCNGG 1 cut(s) 124
Bme18I GGWCC 1 cut(s) 119
BmeRI GACNNNNNGTC 1 cut(s) 38
BmgT120I GGNCC 1 cut(s) 119
BmiI GGNNCC 1 cut(s) 121
BmrFI CCNGG 1 cut(s) 124
BmsI GCATC 2 cut(s) 509, 618
BpiI GAAGAC 1 cut(s) 306
BpuEI CTTGAG 1 cut(s) 379
BsaHI GRCGYC 1 cut(s) 168
BsaJI CCNNGG 3 cut(s) 122, 123, 632
BsaWI WCCGGW 1 cut(s) 6
Bsc4I CCNNNNNNNGG 2 cut(s) 316, 396
Bse1I ACTGG 2 cut(s) 215, 411
Bse21I CCTNAGG 1 cut(s) 681
BseBI CCWGG 1 cut(s) 124
BseDI CCNNGG 3 cut(s) 122, 123, 632
BseGI GGATG 3 cut(s) 203, 219, 457
BseLI CCNNNNNNNGG 2 cut(s) 316, 396
BseMII CTCAG 1 cut(s) 26
BseNI ACTGG 2 cut(s) 215, 411
BseSI GKGCMC 1 cut(s) 192
BseXI GCAGC 2 cut(s) 191, 338
Bsh1285I CGRYCG 1 cut(s) 11
BshFI GGCC 2 cut(s) 384, 400
BsiEI CGRYCG 1 cut(s) 11
BsiHKAI GWGCWC 1 cut(s) 142
BsiSI CCGG 3 cut(s) 7, 176, 401
BslFI GGGAC 1 cut(s) 673
BslI CCNNNNNNNGG 2 cut(s) 316, 396
BsmFI GGGAC 1 cut(s) 673
BsnI GGCC 2 cut(s) 384, 400
Bsp1286I GDGCHC 2 cut(s) 142, 192
Bsp143I GATC 2 cut(s) 21, 48
BspACI CCGC 2 cut(s) 233, 354
BspANI GGCC 2 cut(s) 384, 400
BspCNI CTCAG 1 cut(s) 27
BspLI GGNNCC 1 cut(s) 121
BspMI ACCTGC 1 cut(s) 685
BsrI ACTGG 2 cut(s) 215, 411
BssECI CCNNGG 3 cut(s) 122, 123, 632
BssMI GATC 2 cut(s) 21, 48
BssNI GRCGYC 1 cut(s) 168
Bst2UI CCWGG 1 cut(s) 124
Bst6I CTCTTC 1 cut(s) 506
BstACI GRCGYC 1 cut(s) 168
BstC8I GCNNGC 1 cut(s) 702
BstDEI CTNAG 2 cut(s) 35, 681
BstENI CCTNNNNNAGG 1 cut(s) 394
BstF5I GGATG 3 cut(s) 203, 219, 457
BstKTI GATC 2 cut(s) 24, 51
BstMBI GATC 2 cut(s) 21, 48
BstMCI CGRYCG 1 cut(s) 11
BstMWI GCNNNNNNNGC 3 cut(s) 146, 390, 528
BstNI CCWGG 1 cut(s) 124
BstNSI RCATGY 1 cut(s) 704
BstSCI CCNGG 1 cut(s) 122
BstSLI GKGCMC 1 cut(s) 192
BstV1I GCAGC 2 cut(s) 191, 338
BstV2I GAAGAC 1 cut(s) 306
Bsu36I CCTNAGG 1 cut(s) 681
BsuI GTATCC 1 cut(s) 122
BsuRI GGCC 2 cut(s) 384, 400
BtsCI GGATG 3 cut(s) 203, 219, 457
BtsI GCAGTG 1 cut(s) 538
BtsIMutI CAGTG 1 cut(s) 538
BveI ACCTGC 1 cut(s) 685
Cac8I GCNNGC 1 cut(s) 702
Cfr13I GGNCC 1 cut(s) 119
CseI GACGC 1 cut(s) 157
Csp6I GTAC 1 cut(s) 230
CviAII CATG 3 cut(s) 15, 377, 701
CviJI RGCY 9 cut(s) 140, 149, 155, 268, 384, 400, 544, 560, 672
CviKI_1 RGCY 9 cut(s) 140, 149, 155, 268, 384, 400, 544, 560, 672
CviQI GTAC 1 cut(s) 230
DdeI CTNAG 2 cut(s) 35, 681
DpnI GATC 2 cut(s) 23, 50
DpnII GATC 2 cut(s) 21, 48
DriI GACNNNNNGTC 1 cut(s) 38
Eam1104I CTCTTC 1 cut(s) 506
Eam1105I GACNNNNNGTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 506
Ecl136II GAGCTC 1 cut(s) 140
Eco24I GRGCYC 1 cut(s) 142
Eco47I GGWCC 1 cut(s) 119
Eco53kI GAGCTC 1 cut(s) 140
Eco57I CTGAAG 1 cut(s) 215
Eco81I CCTNAGG 1 cut(s) 681
EcoICRI GAGCTC 1 cut(s) 140
EcoNI CCTNNNNNAGG 1 cut(s) 394
EcoO109I RGGNCCY 1 cut(s) 119
EcoRII CCWGG 1 cut(s) 122
EcoT38I GRGCYC 1 cut(s) 142
FaeI CATG 3 cut(s) 18, 380, 704
FaqI GGGAC 1 cut(s) 673
FatI CATG 3 cut(s) 14, 376, 700
FauNDI CATATG 1 cut(s) 550
FblI GTMKAC 1 cut(s) 42
Fnu4HI GCNGC 2 cut(s) 180, 352
FokI GGATG 3 cut(s) 190, 226, 464
FriOI GRGCYC 1 cut(s) 142
Fsp4HI GCNGC 2 cut(s) 180, 352
FspBI CTAG 2 cut(s) 152, 669
GluI GCNGC 2 cut(s) 180, 352
HaeIII GGCC 2 cut(s) 384, 400
HapII CCGG 3 cut(s) 7, 176, 401
HgaI GACGC 1 cut(s) 157
Hin1I GRCGYC 1 cut(s) 168
Hin1II CATG 3 cut(s) 18, 380, 704
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HinfI GANTC 5 cut(s) 246, 288, 424, 593, 653
HpaII CCGG 3 cut(s) 7, 176, 401
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 4 cut(s) 53, 94, 245, 598
Hpy188III TCNNGA 2 cut(s) 250, 310
Hpy8I GTNNAC 1 cut(s) 43
Hpy99I CGWCG 1 cut(s) 47
HpyAV CCTTC 3 cut(s) 88, 395, 581
HpyCH4V TGCA 4 cut(s) 223, 322, 578, 700
HpyF10VI GCNNNNNNNGC 3 cut(s) 146, 390, 528
HpyF3I CTNAG 2 cut(s) 35, 681
Hsp92I GRCGYC 1 cut(s) 168
Hsp92II CATG 3 cut(s) 18, 380, 704
Kzo9I GATC 2 cut(s) 21, 48
LmnI GCTCC 1 cut(s) 145
Lsp1109I GCAGC 2 cut(s) 191, 338
LweI GCATC 2 cut(s) 509, 618
MaeI CTAG 2 cut(s) 152, 669
MaeIII GTNAC 2 cut(s) 169, 370
MalI GATC 2 cut(s) 23, 50
MboI GATC 2 cut(s) 21, 48
MboII GAAGA 8 cut(s) 208, 311, 425, 451, 523, 528, 628, 631
MhlI GDGCHC 2 cut(s) 142, 192
MluCI AATT 2 cut(s) 323, 445
MlyI GAGTC 3 cut(s) 255, 433, 662
MnlI CCTC 4 cut(s) 110, 279, 469, 627
MseI TTAA 1 cut(s) 706
MspA1I CMGCKG 2 cut(s) 235, 560
MspI CCGG 3 cut(s) 7, 176, 401
MspR9I CCNGG 1 cut(s) 124
MvaI CCWGG 1 cut(s) 124
MwoI GCNNNNNNNGC 3 cut(s) 146, 390, 528
NdeI CATATG 1 cut(s) 550
NdeII GATC 2 cut(s) 21, 48
NlaIII CATG 3 cut(s) 18, 380, 704
NlaIV GGNNCC 1 cut(s) 121
NmeAIII GCCGAG 1 cut(s) 657
NmuCI GTSAC 2 cut(s) 169, 370
NspI RCATGY 1 cut(s) 704
PaeI GCATGC 1 cut(s) 704
PaqCI CACCTGC 1 cut(s) 685
PasI CCCWGGG 1 cut(s) 123
PfeI GAWTC 2 cut(s) 288, 593
PflFI GACNNNGTC 2 cut(s) 65, 305
PflMI CCANNNNNTGG 1 cut(s) 316
PkrI GCNGC 2 cut(s) 181, 353
PleI GAGTC 3 cut(s) 254, 432, 661
PpsI GAGTC 3 cut(s) 254, 432, 661
PpuMI RGGWCCY 1 cut(s) 119
Psp124BI GAGCTC 1 cut(s) 142
Psp5II RGGWCCY 1 cut(s) 119
Psp6I CCWGG 1 cut(s) 122
PspGI CCWGG 1 cut(s) 122
PspN4I GGNNCC 1 cut(s) 121
PspPI GGNCC 1 cut(s) 119
PspPPI RGGWCCY 1 cut(s) 119
PsyI GACNNNGTC 2 cut(s) 65, 305
PvuII CAGCTG 1 cut(s) 560
RsaI GTAC 1 cut(s) 231
RsaNI GTAC 1 cut(s) 230
SacI GAGCTC 1 cut(s) 142
SalI GTCGAC 1 cut(s) 41
SaqAI TTAA 1 cut(s) 706
SatI GCNGC 2 cut(s) 180, 352
Sau3AI GATC 2 cut(s) 21, 48
Sau96I GGNCC 1 cut(s) 119
SchI GAGTC 3 cut(s) 255, 433, 662
ScrFI CCNGG 1 cut(s) 124
SduI GDGCHC 2 cut(s) 142, 192
SetI ASST 9 cut(s) 80, 142, 157, 546, 562, 627, 638, 674, 699
SfaNI GCATC 2 cut(s) 509, 618
SinI GGWCC 1 cut(s) 119
SmlI CTYRAG 1 cut(s) 394
SmoI CTYRAG 1 cut(s) 394
SphI GCATGC 1 cut(s) 704
Sse9I AATT 2 cut(s) 323, 445
SsiI CCGC 2 cut(s) 233, 354
SspMI CTAG 2 cut(s) 152, 669
SstI GAGCTC 1 cut(s) 142
StyD4I CCNGG 1 cut(s) 122
TaqI TCGA 2 cut(s) 42, 249
TasI AATT 2 cut(s) 323, 445
TfiI GAWTC 2 cut(s) 288, 593
Tru1I TTAA 1 cut(s) 706
Tru9I TTAA 1 cut(s) 706
TscAI CASTG 1 cut(s) 538
TseFI GTSAC 2 cut(s) 169, 370
TseI GCWGC 2 cut(s) 179, 351
Tsp45I GTSAC 2 cut(s) 169, 370
TspDTI ATGAA 1 cut(s) 70
TspRI CASTG 1 cut(s) 538
Tth111I GACNNNGTC 2 cut(s) 65, 305
Van91I CCANNNNNTGG 1 cut(s) 316
VpaK11BI GGWCC 1 cut(s) 119
XagI CCTNNNNNAGG 1 cut(s) 394
XapI RAATTY 1 cut(s) 445
XceI RCATGY 1 cut(s) 704
XmiI GTMKAC 1 cut(s) 42
XspI CTAG 2 cut(s) 152, 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.