Rmu_sc0002586.1_g000035

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002586.1
OG0000308
Physical Location & Seq
Forward (+)
131075 .. 131896
822 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002586.1_g000035.1.cds

Sequence Viewer

Length: 822 bp
atgcgcatgattggcagcaccataggagatctgaagcaatgggacagaatggctttccggagaggtgtattgcgggtcagggtggagattgagctgtcacagcccatacatactcaacgtctatttcggttggaggatcgagtggaggtgttggtgaaattccgttttgacaaactatttggcaggtgcaacagttgtgggtttgtaacccatgtgggattaccatgttctggaccggtgttggaagacggggttgaacatgaccggcctcacctggtggagcagcgtagcggtgctgctgaagcaacattagcggttcgagcaccggaggctagggcaaaccctagcggacctactttggttttcaaggcacaagttctccctgggatagctgaaactttagcggcgctatcgacaggccctttccttcctcaaaagcctcgacgtcaagtcgccatccgagaacttaaaggaaacaatgaacatgcatctccaattacggggaagatgaggcaacgaacaggtgatgtgtcggtatctccgaagaagccaagattgagtttagcaattggtaagcacaatattgatgctgccactataggtttacttgcacctgctatgagtccgccaaataagaataagcgtggtcgccctgctggtagtcttaacaagatgccatatggtactgctggtaagggaacgaaaacctctgaggtaagtagtgagaagaaggagggtgccaagacccgcaagaacttaaatggggacttggcaaatgctggcgactccaaccctaaaaggacgaagttggttctatgttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

273

Amino Acids

29.67

Weight (kDa)

10.38

Isoelectric Point (pI)

45.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 174, 622
AatII GACGTC 1 cut(s) 448
Acc16I TGCGCA 1 cut(s) 5
Acc36I ACCTGC 2 cut(s) 174, 622
AccB1I GGYRCC 1 cut(s) 737
AccB7I CCANNNNNTGG 1 cut(s) 230
AccIII TCCGGA 1 cut(s) 57
AciI CCGC 7 cut(s) 73, 291, 314, 348, 404, 626, 748
AclWI GGATC 1 cut(s) 144
AcsI RAATTY 1 cut(s) 158
AcuI CTGAAG 2 cut(s) 53, 321
AcyI GRCGYC 1 cut(s) 445
AdeI CACNNNGTG 1 cut(s) 277
AfaI GTAC 1 cut(s) 685
AfiI CCNNNNNNNGG 2 cut(s) 230, 500
AgeI ACCGGT 1 cut(s) 235
AgsI TTSAA 2 cut(s) 257, 367
AhdI GACNNNNNGTC 1 cut(s) 449
AjnI CCWGG 2 cut(s) 273, 382
AluBI AGCT 2 cut(s) 94, 392
AluI AGCT 2 cut(s) 94, 392
Alw21I GWGCWC 1 cut(s) 325
AlwI GGATC 1 cut(s) 144
Aor13HI TCCGGA 1 cut(s) 57
AoxI GGCC 2 cut(s) 266, 418
ApeKI GCWGC 4 cut(s) 15, 283, 296, 590
ApoI RAATTY 1 cut(s) 158
ArsI GACNNNNNNTTYG 2 cut(s) 161, 193
AsiGI ACCGGT 1 cut(s) 235
AspLEI GCGC 2 cut(s) 6, 409
AspS9I GGNCC 3 cut(s) 233, 350, 419
AsuHPI GGTGA 3 cut(s) 166, 263, 536
AvaII GGWCC 2 cut(s) 233, 350
BanI GGYRCC 1 cut(s) 737
BbsI GAAGAC 1 cut(s) 252
Bbv12I GWGCWC 1 cut(s) 325
BbvI GCAGC 4 cut(s) 27, 283, 295, 577
BccI CCATC 1 cut(s) 464
BciT130I CCWGG 2 cut(s) 275, 384
BfaI CTAG 2 cut(s) 333, 345
BfmI CTRYAG 1 cut(s) 597
BfoI RGCGCY 1 cut(s) 410
BfuAI ACCTGC 2 cut(s) 174, 622
BglII AGATCT 1 cut(s) 28
BisI GCNGC 5 cut(s) 16, 284, 297, 405, 591
BlsI GCNGC 5 cut(s) 17, 285, 298, 406, 592
Bme1390I CCNGG 2 cut(s) 275, 384
Bme18I GGWCC 2 cut(s) 233, 350
BmeRI GACNNNNNGTC 1 cut(s) 449
BmgT120I GGNCC 3 cut(s) 233, 350, 419
BmiI GGNNCC 1 cut(s) 739
BmrFI CCNGG 2 cut(s) 275, 384
BmsI GCATC 3 cut(s) 497, 577, 663
BpiI GAAGAC 1 cut(s) 252
BsaHI GRCGYC 1 cut(s) 445
BsaJI CCNNGG 2 cut(s) 382, 383
BsaWI WCCGGW 3 cut(s) 57, 235, 325
BsaXI ACNNNNNCTCC 2 cut(s) 363, 393
Bsc4I CCNNNNNNNGG 2 cut(s) 230, 500
Bse118I RCCGGY 2 cut(s) 235, 264
Bse3DI GCAATG 1 cut(s) 44
BseAI TCCGGA 1 cut(s) 57
BseBI CCWGG 2 cut(s) 275, 384
BseDI CCNNGG 2 cut(s) 382, 383
BseGI GGATG 1 cut(s) 456
BseLI CCNNNNNNNGG 2 cut(s) 230, 500
BseMI GCAATG 1 cut(s) 44
BseMII CTCAG 1 cut(s) 702
BseXI GCAGC 4 cut(s) 27, 283, 295, 577
BshFI GGCC 2 cut(s) 268, 420
BshNI GGYRCC 1 cut(s) 737
BshTI ACCGGT 1 cut(s) 235
BsiHKAI GWGCWC 1 cut(s) 325
BsiSI CCGG 4 cut(s) 58, 236, 265, 326
BslFI GGGAC 2 cut(s) 56, 779
BslI CCNNNNNNNGG 2 cut(s) 230, 500
BsmFI GGGAC 2 cut(s) 56, 779
BsnI GGCC 2 cut(s) 268, 420
Bsp1286I GDGCHC 1 cut(s) 325
Bsp13I TCCGGA 1 cut(s) 57
Bsp143I GATC 2 cut(s) 28, 136
BspACI CCGC 7 cut(s) 73, 291, 314, 348, 404, 626, 748
BspANI GGCC 2 cut(s) 268, 420
BspCNI CTCAG 1 cut(s) 703
BspEI TCCGGA 1 cut(s) 57
BspLI GGNNCC 1 cut(s) 739
BspMI ACCTGC 2 cut(s) 174, 622
BspPI GGATC 1 cut(s) 144
BspT107I GGYRCC 1 cut(s) 737
BsrDI GCAATG 1 cut(s) 44
BsrFI RCCGGY 2 cut(s) 235, 264
BssAI RCCGGY 2 cut(s) 235, 264
BssECI CCNNGG 2 cut(s) 382, 383
BssMI GATC 2 cut(s) 28, 136
BssNI GRCGYC 1 cut(s) 445
Bst2UI CCWGG 2 cut(s) 275, 384
Bst4CI ACNGT 1 cut(s) 194
BstACI GRCGYC 1 cut(s) 445
BstC8I GCNNGC 1 cut(s) 781
BstDEI CTNAG 1 cut(s) 711
BstF5I GGATG 1 cut(s) 456
BstH2I RGCGCY 1 cut(s) 410
BstHHI GCGC 2 cut(s) 6, 409
BstKTI GATC 2 cut(s) 31, 139
BstMBI GATC 2 cut(s) 28, 136
BstMWI GCNNNNNNNGC 6 cut(s) 12, 100, 302, 311, 320, 329
BstNI CCWGG 2 cut(s) 275, 384
BstNSI RCATGY 1 cut(s) 488
BstSCI CCNGG 2 cut(s) 273, 382
BstSFI CTRYAG 1 cut(s) 597
BstV1I GCAGC 4 cut(s) 27, 283, 295, 577
BstV2I GAAGAC 1 cut(s) 252
BstX2I RGATCY 1 cut(s) 28
BstYI RGATCY 1 cut(s) 28
BsuRI GGCC 2 cut(s) 268, 420
BtsCI GGATG 1 cut(s) 456
BveI ACCTGC 2 cut(s) 174, 622
Cac8I GCNNGC 1 cut(s) 781
CfoI GCGC 2 cut(s) 6, 409
Cfr10I RCCGGY 2 cut(s) 235, 264
Cfr13I GGNCC 3 cut(s) 233, 350, 419
CsiI ACCWGGT 1 cut(s) 273
Csp6I GTAC 1 cut(s) 684
CspAI ACCGGT 1 cut(s) 235
CspCI CAANNNNNGTGG 2 cut(s) 178, 213
CviAII CATG 5 cut(s) 7, 212, 225, 260, 485
CviJI RGCY 9 cut(s) 53, 94, 103, 268, 332, 392, 420, 439, 550
CviKI_1 RGCY 9 cut(s) 53, 94, 103, 268, 332, 392, 420, 439, 550
CviQI GTAC 1 cut(s) 684
DdeI CTNAG 1 cut(s) 711
DpnI GATC 2 cut(s) 30, 138
DpnII GATC 2 cut(s) 28, 136
DraIII CACNNNGTG 1 cut(s) 277
DriI GACNNNNNGTC 1 cut(s) 449
Eam1105I GACNNNNNGTC 1 cut(s) 449
EciI GGCGGA 1 cut(s) 615
Eco47I GGWCC 2 cut(s) 233, 350
Eco57I CTGAAG 2 cut(s) 53, 321
EcoO109I RGGNCCY 1 cut(s) 419
EcoRII CCWGG 2 cut(s) 273, 382
EcoT22I ATGCAT 1 cut(s) 490
FaeI CATG 5 cut(s) 10, 215, 228, 263, 488
FaqI GGGAC 2 cut(s) 56, 779
FatI CATG 5 cut(s) 6, 211, 224, 259, 484
FauI CCCGC 2 cut(s) 66, 755
FauNDI CATATG 1 cut(s) 679
Fnu4HI GCNGC 5 cut(s) 16, 284, 297, 405, 591
FokI GGATG 1 cut(s) 443
Fsp4HI GCNGC 5 cut(s) 16, 284, 297, 405, 591
FspAI RTGCGCAY 1 cut(s) 5
FspBI CTAG 2 cut(s) 333, 345
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 2 cut(s) 5, 408
GluI GCNGC 5 cut(s) 16, 284, 297, 405, 591
HaeII RGCGCY 1 cut(s) 410
HaeIII GGCC 2 cut(s) 268, 420
HapII CCGG 4 cut(s) 58, 236, 265, 326
HhaI GCGC 2 cut(s) 6, 409
Hin1I GRCGYC 1 cut(s) 445
Hin1II CATG 5 cut(s) 10, 215, 228, 263, 488
Hin6I GCGC 2 cut(s) 4, 407
HinP1I GCGC 2 cut(s) 4, 407
HinfI GANTC 2 cut(s) 622, 785
HpaII CCGG 4 cut(s) 58, 236, 265, 326
HphI GGTGA 3 cut(s) 166, 263, 536
Hpy166II GTNNAC 1 cut(s) 605
Hpy188I TCNGA 4 cut(s) 33, 461, 543, 712
Hpy188III TCNNGA 2 cut(s) 58, 231
Hpy8I GTNNAC 1 cut(s) 605
Hpy99I CGWCG 1 cut(s) 447
HpyAV CCTTC 2 cut(s) 437, 724
HpyCH4III ACNGT 1 cut(s) 194
HpyCH4IV ACGT 2 cut(s) 118, 445
HpyCH4V TGCA 3 cut(s) 189, 488, 611
HpyF10VI GCNNNNNNNGC 6 cut(s) 12, 100, 302, 311, 320, 329
HpyF3I CTNAG 1 cut(s) 711
HpySE526I ACGT 2 cut(s) 118, 445
Hsp92I GRCGYC 1 cut(s) 445
Hsp92II CATG 5 cut(s) 10, 215, 228, 263, 488
HspAI GCGC 2 cut(s) 4, 407
Kpn2I TCCGGA 1 cut(s) 57
Kzo9I GATC 2 cut(s) 28, 136
LmnI GCTCC 1 cut(s) 280
Lsp1109I GCAGC 4 cut(s) 27, 283, 295, 577
LweI GCATC 3 cut(s) 497, 577, 663
MabI ACCWGGT 1 cut(s) 273
MaeI CTAG 2 cut(s) 333, 345
MaeII ACGT 2 cut(s) 118, 445
MaeIII GTNAC 2 cut(s) 96, 205
MalI GATC 2 cut(s) 30, 138
MboI GATC 2 cut(s) 28, 136
MboII GAAGA 4 cut(s) 257, 517, 556, 739
MfeI CAATTG 1 cut(s) 567
MflI RGATCY 1 cut(s) 28
MhlI GDGCHC 1 cut(s) 325
MluCI AATT 3 cut(s) 158, 495, 567
MlyI GAGTC 2 cut(s) 631, 779
MmeI TCCRAC 3 cut(s) 111, 222, 813
Mph1103I ATGCAT 1 cut(s) 490
MroI TCCGGA 1 cut(s) 57
MseI TTAA 4 cut(s) 468, 666, 758, 820
MspI CCGG 4 cut(s) 58, 236, 265, 326
MspR9I CCNGG 2 cut(s) 275, 384
MunI CAATTG 1 cut(s) 567
MvaI CCWGG 2 cut(s) 275, 384
MwoI GCNNNNNNNGC 6 cut(s) 12, 100, 302, 311, 320, 329
NdeI CATATG 1 cut(s) 679
NdeII GATC 2 cut(s) 28, 136
NlaIII CATG 5 cut(s) 10, 215, 228, 263, 488
NlaIV GGNNCC 1 cut(s) 739
NmuCI GTSAC 1 cut(s) 96
NsbI TGCGCA 1 cut(s) 5
NsiI ATGCAT 1 cut(s) 490
NspI RCATGY 1 cut(s) 488
PaqCI CACCTGC 2 cut(s) 174, 622
PasI CCCWGGG 1 cut(s) 383
PcsI WCGNNNNNNNCGW 1 cut(s) 539
PflMI CCANNNNNTGG 1 cut(s) 230
PinAI ACCGGT 1 cut(s) 235
PkrI GCNGC 5 cut(s) 17, 285, 298, 406, 592
PleI GAGTC 2 cut(s) 630, 779
PpsI GAGTC 2 cut(s) 630, 779
Psp6I CCWGG 2 cut(s) 273, 382
PspGI CCWGG 2 cut(s) 273, 382
PspN4I GGNNCC 1 cut(s) 739
PspPI GGNCC 3 cut(s) 233, 350, 419
PsuI RGATCY 1 cut(s) 28
RsaI GTAC 1 cut(s) 685
RsaNI GTAC 1 cut(s) 684
SaqAI TTAA 4 cut(s) 468, 666, 758, 820
SatI GCNGC 5 cut(s) 16, 284, 297, 405, 591
Sau3AI GATC 2 cut(s) 28, 136
Sau96I GGNCC 3 cut(s) 233, 350, 419
SchI GAGTC 2 cut(s) 631, 779
ScrFI CCNGG 2 cut(s) 275, 384
SduI GDGCHC 1 cut(s) 325
SexAI ACCWGGT 1 cut(s) 273
SfaNI GCATC 3 cut(s) 497, 577, 663
SfcI CTRYAG 1 cut(s) 597
SinI GGWCC 2 cut(s) 233, 350
Sse9I AATT 3 cut(s) 158, 495, 567
SsiI CCGC 7 cut(s) 73, 291, 314, 348, 404, 626, 748
SspI AATATT 1 cut(s) 583
SspMI CTAG 2 cut(s) 333, 345
StyD4I CCNGG 2 cut(s) 273, 382
TaaI ACNGT 1 cut(s) 194
TaiI ACGT 2 cut(s) 121, 448
TaqI TCGA 4 cut(s) 139, 319, 413, 442
TasI AATT 3 cut(s) 158, 495, 567
TauI GCSGC 1 cut(s) 407
Tru1I TTAA 4 cut(s) 468, 666, 758, 820
Tru9I TTAA 4 cut(s) 468, 666, 758, 820
TseFI GTSAC 1 cut(s) 96
TseI GCWGC 4 cut(s) 15, 283, 296, 590
Tsp45I GTSAC 1 cut(s) 96
TspDTI ATGAA 1 cut(s) 495
TspGWI ACGGA 1 cut(s) 152
Van91I CCANNNNNTGG 1 cut(s) 230
VpaK11BI GGWCC 2 cut(s) 233, 350
XapI RAATTY 1 cut(s) 158
XceI RCATGY 1 cut(s) 488
XspI CTAG 2 cut(s) 333, 345
ZraI GACGTC 1 cut(s) 446
Zsp2I ATGCAT 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.