Rmu_sc0000342.1_g000003

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000342.1
OG0000308
Physical Location & Seq
Forward (+)
7789 .. 8334
546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000342.1_g000003.1.cds

Sequence Viewer

Length: 546 bp
atggcatccattgatgtaatggtcgctcgcctagcttcctctctcgccatcgcctatccagtggatctacgtccctctaagggtttacggcaaccagaagttttcatggttgggaaactcctcactgctagtgagtataatcgtcgatctctccttagcatgtttagatctgcatggaggattaatggtacgcttagggttgaagacagaggggaggatgatcatattctgttttctttctctgatcctacttaccgcaatagagtctggaagggcagaccgcggtgttttagtagggctccgattgcattagctgagtacgacagtgtgcgtcaaattgcagaggtacctctgaagacttcctcctattggatcacgttgatgggagtgctaccaacttttcgatctgaaccgattatgcggctcattgggagtacgttgggagagtttcaggaattcaacaaaatcgccttcaggactagggttttacttatccgggtggaaatcgagtatgctagctcgtcggtgttcaagcggaggttctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

181

Amino Acids

20.88

Weight (kDa)

10.25

Isoelectric Point (pI)

56.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 346
AccB1I GGYRCC 1 cut(s) 346
AccII CGCG 1 cut(s) 283
AciI CCGC 5 cut(s) 256, 281, 283, 421, 535
AclWI GGATC 3 cut(s) 72, 239, 380
AcsI RAATTY 1 cut(s) 455
AcuI CTGAAG 2 cut(s) 374, 457
AfaI GTAC 4 cut(s) 190, 320, 348, 436
AfiI CCNNNNNNNGG 2 cut(s) 80, 369
AgsI TTSAA 3 cut(s) 203, 460, 532
AluBI AGCT 3 cut(s) 35, 314, 519
AluI AGCT 3 cut(s) 35, 314, 519
AlwI GGATC 3 cut(s) 72, 239, 380
ApoI RAATTY 1 cut(s) 455
AseI ATTAAT 1 cut(s) 183
Asp718I GGTACC 1 cut(s) 346
AsuC2I CCSGG 1 cut(s) 497
AsuNHI GCTAGC 1 cut(s) 515
BanI GGYRCC 1 cut(s) 346
BanII GRGCYC 1 cut(s) 301
BbsI GAAGAC 2 cut(s) 210, 362
BccI CCATC 2 cut(s) 56, 376
BceAI ACGGC 1 cut(s) 104
BclI TGATCA 1 cut(s) 220
BcnI CCSGG 1 cut(s) 497
BfaI CTAG 5 cut(s) 32, 129, 480, 516, 544
BglII AGATCT 1 cut(s) 167
BisI GCNGC 1 cut(s) 422
BlsI GCNGC 1 cut(s) 423
Bme1390I CCNGG 1 cut(s) 497
BmiI GGNNCC 2 cut(s) 300, 348
BmrFI CCNGG 1 cut(s) 497
BmsI GCATC 1 cut(s) 14
BmtI GCTAGC 1 cut(s) 519
BpiI GAAGAC 2 cut(s) 210, 362
Bpu10I CCTNAGC 2 cut(s) 155, 194
BpuMI CCSGG 1 cut(s) 497
BsaJI CCNNGG 1 cut(s) 281
Bsc4I CCNNNNNNNGG 2 cut(s) 80, 369
Bse1I ACTGG 1 cut(s) 59
BseDI CCNNGG 1 cut(s) 281
BseGI GGATG 2 cut(s) 5, 223
BseLI CCNNNNNNNGG 2 cut(s) 80, 369
BseMII CTCAG 1 cut(s) 306
BseNI ACTGG 1 cut(s) 59
BseRI GAGGAG 1 cut(s) 110
Bsh1236I CGCG 1 cut(s) 283
BshNI GGYRCC 1 cut(s) 346
BsiSI CCGG 1 cut(s) 496
BslFI GGGAC 1 cut(s) 57
BslI CCNNNNNNNGG 2 cut(s) 80, 369
BsmFI GGGAC 1 cut(s) 57
Bsp1286I GDGCHC 1 cut(s) 301
Bsp143I GATC 7 cut(s) 64, 146, 167, 220, 244, 372, 404
BspACI CCGC 5 cut(s) 256, 281, 283, 421, 535
BspCNI CTCAG 1 cut(s) 307
BspFNI CGCG 1 cut(s) 283
BspLI GGNNCC 2 cut(s) 300, 348
BspOI GCTAGC 1 cut(s) 519
BspPI GGATC 3 cut(s) 72, 239, 380
BspT107I GGYRCC 1 cut(s) 346
BsrI ACTGG 1 cut(s) 59
BssECI CCNNGG 1 cut(s) 281
BssMI GATC 7 cut(s) 64, 146, 167, 220, 244, 372, 404
Bst4CI ACNGT 1 cut(s) 326
BstC8I GCNNGC 2 cut(s) 28, 517
BstDEI CTNAG 4 cut(s) 78, 155, 194, 315
BstDSI CCRYGG 1 cut(s) 281
BstF5I GGATG 2 cut(s) 5, 223
BstFNI CGCG 1 cut(s) 283
BstKTI GATC 7 cut(s) 67, 149, 170, 223, 247, 375, 407
BstMBI GATC 7 cut(s) 64, 146, 167, 220, 244, 372, 404
BstMWI GCNNNNNNNGC 2 cut(s) 32, 305
BstNSI RCATGY 1 cut(s) 163
BstSCI CCNGG 1 cut(s) 495
BstUI CGCG 1 cut(s) 283
BstV2I GAAGAC 2 cut(s) 210, 362
BstX2I RGATCY 2 cut(s) 64, 167
BstYI RGATCY 2 cut(s) 64, 167
BtgI CCRYGG 1 cut(s) 281
BtgZI GCGATG 1 cut(s) 34
BtsCI GGATG 2 cut(s) 5, 223
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 3 cut(s) 66, 123, 331
Cac8I GCNNGC 2 cut(s) 28, 517
Cfr42I CCGCGG 1 cut(s) 284
CseI GACGC 1 cut(s) 320
Csp6I GTAC 4 cut(s) 189, 319, 347, 435
CviAII CATG 3 cut(s) 106, 160, 174
CviJI RGCY 5 cut(s) 35, 299, 314, 424, 519
CviKI_1 RGCY 5 cut(s) 35, 299, 314, 424, 519
CviQI GTAC 4 cut(s) 189, 319, 347, 435
DdeI CTNAG 4 cut(s) 78, 155, 194, 315
DpnI GATC 7 cut(s) 66, 148, 169, 222, 246, 374, 406
DpnII GATC 7 cut(s) 64, 146, 167, 220, 244, 372, 404
Eco24I GRGCYC 1 cut(s) 301
Eco57I CTGAAG 2 cut(s) 374, 457
EcoRI GAATTC 1 cut(s) 455
EcoT38I GRGCYC 1 cut(s) 301
FaeI CATG 3 cut(s) 109, 163, 177
FaiI YATR 7 cut(s) 107, 138, 161, 175, 225, 419, 513
FaqI GGGAC 1 cut(s) 57
FatI CATG 3 cut(s) 105, 159, 173
FbaI TGATCA 1 cut(s) 220
Fnu4HI GCNGC 1 cut(s) 422
FokI GGATG 1 cut(s) 230
FriOI GRGCYC 1 cut(s) 301
Fsp4HI GCNGC 1 cut(s) 422
FspBI CTAG 5 cut(s) 32, 129, 480, 516, 544
GluI GCNGC 1 cut(s) 422
HapII CCGG 1 cut(s) 496
HgaI GACGC 1 cut(s) 320
Hin1II CATG 3 cut(s) 109, 163, 177
HinfI GANTC 1 cut(s) 264
HpaII CCGG 1 cut(s) 496
Hpy166II GTNNAC 1 cut(s) 86
Hpy188I TCNGA 4 cut(s) 244, 303, 354, 409
Hpy188III TCNNGA 3 cut(s) 268, 452, 475
Hpy8I GTNNAC 1 cut(s) 86
Hpy99I CGWCG 2 cut(s) 147, 526
HpyAV CCTTC 2 cut(s) 265, 481
HpyCH4III ACNGT 1 cut(s) 326
HpyCH4IV ACGT 3 cut(s) 70, 377, 437
HpyCH4V TGCA 3 cut(s) 173, 308, 341
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 305
HpyF3I CTNAG 4 cut(s) 78, 155, 194, 315
HpySE526I ACGT 3 cut(s) 70, 377, 437
Hsp92II CATG 3 cut(s) 109, 163, 177
KpnI GGTACC 1 cut(s) 350
Ksp22I TGATCA 1 cut(s) 220
KspI CCGCGG 1 cut(s) 284
Kzo9I GATC 7 cut(s) 64, 146, 167, 220, 244, 372, 404
LmnI GCTCC 1 cut(s) 304
LpnPI CCDG 6 cut(s) 72, 108, 253, 437, 460, 509
LweI GCATC 1 cut(s) 14
MaeI CTAG 5 cut(s) 32, 129, 480, 516, 544
MaeII ACGT 3 cut(s) 70, 377, 437
MalI GATC 7 cut(s) 66, 148, 169, 222, 246, 374, 406
MboI GATC 7 cut(s) 64, 146, 167, 220, 244, 372, 404
MboII GAAGA 2 cut(s) 215, 367
MflI RGATCY 2 cut(s) 64, 167
MhlI GDGCHC 1 cut(s) 301
MluCI AATT 2 cut(s) 336, 455
MlyI GAGTC 1 cut(s) 273
MseI TTAA 1 cut(s) 183
MslI CAYNNNNRTG 1 cut(s) 380
MspA1I CMGCKG 1 cut(s) 283
MspI CCGG 1 cut(s) 496
MspR9I CCNGG 1 cut(s) 497
MvnI CGCG 1 cut(s) 283
MwoI GCNNNNNNNGC 2 cut(s) 32, 305
NciI CCSGG 1 cut(s) 497
NdeII GATC 7 cut(s) 64, 146, 167, 220, 244, 372, 404
NheI GCTAGC 1 cut(s) 515
NlaIII CATG 3 cut(s) 109, 163, 177
NlaIV GGNNCC 2 cut(s) 300, 348
NspI RCATGY 1 cut(s) 163
PkrI GCNGC 1 cut(s) 423
PleI GAGTC 1 cut(s) 272
PpsI GAGTC 1 cut(s) 272
PshBI ATTAAT 1 cut(s) 183
PspN4I GGNNCC 2 cut(s) 300, 348
PsuI RGATCY 2 cut(s) 64, 167
RsaI GTAC 4 cut(s) 190, 320, 348, 436
RsaNI GTAC 4 cut(s) 189, 319, 347, 435
RseI CAYNNNNRTG 1 cut(s) 380
SacII CCGCGG 1 cut(s) 284
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 1 cut(s) 422
Sau3AI GATC 7 cut(s) 64, 146, 167, 220, 244, 372, 404
SchI GAGTC 1 cut(s) 273
ScrFI CCNGG 1 cut(s) 497
SduI GDGCHC 1 cut(s) 301
SetI ASST 9 cut(s) 37, 73, 316, 348, 352, 380, 440, 521, 542
SfaNI GCATC 1 cut(s) 14
Sfr303I CCGCGG 1 cut(s) 284
SgrBI CCGCGG 1 cut(s) 284
SmiMI CAYNNNNRTG 1 cut(s) 380
Sse9I AATT 2 cut(s) 336, 455
SsiI CCGC 5 cut(s) 256, 281, 283, 421, 535
SspMI CTAG 5 cut(s) 32, 129, 480, 516, 544
StyD4I CCNGG 1 cut(s) 495
TaaI ACNGT 1 cut(s) 326
TaiI ACGT 3 cut(s) 73, 380, 440
TaqI TCGA 3 cut(s) 145, 403, 507
TasI AATT 2 cut(s) 336, 455
TauI GCSGC 1 cut(s) 424
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TscAI CASTG 3 cut(s) 66, 130, 331
TspDTI ATGAA 1 cut(s) 94
TspRI CASTG 3 cut(s) 66, 130, 331
VspI ATTAAT 1 cut(s) 183
XapI RAATTY 1 cut(s) 455
XceI RCATGY 1 cut(s) 163
XcmI CCANNNNNNNNNTGG 1 cut(s) 16
XspI CTAG 5 cut(s) 32, 129, 480, 516, 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.