Rmu_ssc0000171.1_g000015

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000171.1
OG0000308
Physical Location & Seq
Forward (+)
36889 .. 38139
1251 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000171.1_g000015.1.cds

Sequence Viewer

Length: 1251 bp
atggaggacattgacgctatggcagccagactggcgtcgtcgttggcgctggcggaggggaaaagagcagtggatctgaggccatccaagggcaagggtctacgccaaccggaggtgtatatggttggcaagttactcatggcaagggagtataggaaacgttcttttttggggatgtttcgatctgcatggcatgttggtggagattttcgggtggagccggcagcaggagaccgagttctgttctctttctcggatccggtggaccgcgctcgtgtgtggcgtggtggcccctggggtttcaaccgagcccctgtagcactagcagactatgatgggatcgaaccagtcgaacaggtgctgctgcatcgttcttcctattgggttacgttgttggatgtgccgccggcattccgatccgaaagggtgatgcgcatgattggcagcaccattggtgatctgaaggagtgggacagaccggcttttcggcgcggtgtactgcgggtcagggtggagatcgaattttcacagcccatacttactcaacgcctatttctgttggaggatcgagtggaggtgctggtgagattcctttttgacaagctttttggcaggtgcaccagctgcgggtttgtaacccatgtggggttaccgtgttctggaccggtgctggaagatggggttggacatggcaggcctcgtccggtggagcagaatcgcggtgctgctgcaacaacagtgacagttagagcaccggaagctagggcaaattccagcggccctactttggtcttcaaggcacgagttccctctgggatggctgaaaccttggcttctatgtctgcaggctctttccttcctcagaagactcgacgtcaagtcaccatccgagaaattgaagaaaacaatgagcatgcatctccaattacggggaagaggaggaaaagaacaggtgatgtttcggtgtctccgaagaagccaaggctgagtttagcaattggtaagcacaatattgatgcagccactatgggtttaattgaaactgctatgagtaagcccaataagaagaagcgtggtcgacctgctggtagtcttaacaagctgccgtatggtactgctggtaagggaacgaaaaactcagcgacacgtagtgagaagaagaagggcgccaaggcccgaaagaatttagatggggacttggcaactgctggcgactccaaccctcaggggaaggagttggttctattttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

416

Amino Acids

45.74

Weight (kDa)

10.35

Isoelectric Point (pI)

51.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
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Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 603
AatII GACGTC 1 cut(s) 877
Acc16I TGCGCA 1 cut(s) 434
Acc36I ACCTGC 2 cut(s) 603, 1090
AccB1I GGYRCC 1 cut(s) 1166
AccI GTMKAC 2 cut(s) 100, 1078
AccII CGCG 3 cut(s) 270, 492, 720
AciI CCGC 8 cut(s) 53, 268, 404, 492, 502, 627, 720, 777
AclI AACGTT 1 cut(s) 160
AclWI GGATC 6 cut(s) 81, 251, 264, 347, 411, 573
AcsI RAATTY 3 cut(s) 521, 769, 1183
AcuI CTGAAG 1 cut(s) 482
AcyI GRCGYC 3 cut(s) 35, 874, 1167
AdeI CACNNNGTG 1 cut(s) 1151
AfaI GTAC 2 cut(s) 498, 1114
AfiI CCNNNNNNNGG 8 cut(s) 89, 112, 227, 627, 645, 659, 787, 929
AflIII ACRYGT 1 cut(s) 1145
AgeI ACCGGT 1 cut(s) 664
AgsI TTSAA 4 cut(s) 304, 796, 899, 1040
AhdI GACNNNNNGTC 2 cut(s) 873, 878
AjnI CCWGG 1 cut(s) 293
AjuI GAANNNNNNNTTGG 2 cut(s) 666, 698
AloI GAACNNNNNNTCC 2 cut(s) 222, 254
AluBI AGCT 4 cut(s) 604, 624, 761, 1102
AluI AGCT 4 cut(s) 604, 624, 761, 1102
Alw21I GWGCWC 2 cut(s) 620, 754
Alw26I GTCTC 2 cut(s) 225, 972
Alw44I GTGCAC 1 cut(s) 616
AlwI GGATC 6 cut(s) 81, 251, 264, 347, 411, 573
AlwNI CAGNNNCTG 1 cut(s) 361
AoxI GGCC 5 cut(s) 80, 289, 695, 778, 1173
ApaLI GTGCAC 1 cut(s) 616
ApoI RAATTY 3 cut(s) 521, 769, 1183
ArsI GACNNNNNNTTYG 4 cut(s) 468, 500, 590, 622
AsiGI ACCGGT 1 cut(s) 664
AspLEI GCGC 5 cut(s) 49, 272, 435, 492, 1169
AspS9I GGNCC 5 cut(s) 265, 290, 662, 779, 1174
AsuHPI GGTGA 5 cut(s) 439, 467, 595, 874, 965
AvaII GGWCC 2 cut(s) 265, 662
AxyI CCTNAGG 1 cut(s) 1224
BaeGI GKGCMC 1 cut(s) 620
BamHI GGATCC 1 cut(s) 256
BanI GGYRCC 1 cut(s) 1166
BanII GRGCYC 1 cut(s) 313
BauI CACGAG 2 cut(s) 273, 801
BbsI GAAGAC 2 cut(s) 784, 872
Bbv12I GWGCWC 2 cut(s) 620, 754
BccI CCATC 6 cut(s) 91, 329, 671, 811, 893, 1184
BceAI ACGGC 1 cut(s) 1090
BciT130I CCWGG 1 cut(s) 295
BcoDI GTCTC 2 cut(s) 225, 972
BfaI CTAG 2 cut(s) 323, 762
BfmI CTRYAG 2 cut(s) 315, 843
BfoI RGCGCY 2 cut(s) 50, 1170
BfuAI ACCTGC 2 cut(s) 603, 1090
BglI GCCNNNNNGGC 1 cut(s) 32
Bme1390I CCNGG 1 cut(s) 295
Bme18I GGWCC 2 cut(s) 265, 662
BmeRI GACNNNNNGTC 2 cut(s) 873, 878
BmgT120I GGNCC 5 cut(s) 265, 290, 662, 779, 1174
BmiI GGNNCC 4 cut(s) 219, 258, 292, 1168
BmrFI CCNGG 1 cut(s) 295
BmsI GCATC 4 cut(s) 376, 420, 926, 1006
BoxI GACNNNNGTC 1 cut(s) 34
BpiI GAAGAC 2 cut(s) 784, 872
BsaAI YACGTR 1 cut(s) 1148
BsaHI GRCGYC 3 cut(s) 35, 874, 1167
BsaI GGTCTC 1 cut(s) 225
BsaJI CCNNGG 6 cut(s) 87, 293, 294, 828, 980, 1170
BsaWI WCCGGW 5 cut(s) 109, 259, 664, 703, 754
BsaXI ACNNNNNCTCC 2 cut(s) 222, 252
Bsc4I CCNNNNNNNGG 8 cut(s) 89, 112, 227, 627, 645, 659, 787, 929
Bse118I RCCGGY 4 cut(s) 220, 406, 478, 664
Bse1I ACTGG 2 cut(s) 36, 347
Bse21I CCTNAGG 1 cut(s) 1224
BseBI CCWGG 1 cut(s) 295
BseDI CCNNGG 6 cut(s) 87, 293, 294, 828, 980, 1170
BseGI GGATG 5 cut(s) 83, 180, 403, 822, 885
BseLI CCNNNNNNNGG 8 cut(s) 89, 112, 227, 627, 645, 659, 787, 929
BseMII CTCAG 5 cut(s) 68, 875, 977, 1152, 1238
BseNI ACTGG 2 cut(s) 36, 347
BseRI GAGGAG 1 cut(s) 952
BseSI GKGCMC 1 cut(s) 620
Bsh1236I CGCG 3 cut(s) 270, 492, 720
BshFI GGCC 5 cut(s) 82, 291, 697, 780, 1175
BshNI GGYRCC 1 cut(s) 1166
BshTI ACCGGT 1 cut(s) 664
BsiHKAI GWGCWC 2 cut(s) 620, 754
BsiSI CCGG 8 cut(s) 110, 221, 260, 407, 479, 665, 704, 755
BslFI GGGAC 2 cut(s) 485, 1208
BslI CCNNNNNNNGG 8 cut(s) 89, 112, 227, 627, 645, 659, 787, 929
BsmAI GTCTC 2 cut(s) 225, 972
BsmFI GGGAC 2 cut(s) 485, 1208
BsmI GAATGC 1 cut(s) 410
BsnI GGCC 5 cut(s) 82, 291, 697, 780, 1175
Bso31I GGTCTC 1 cut(s) 225
Bsp1286I GDGCHC 3 cut(s) 313, 620, 754
Bsp143I GATC 8 cut(s) 73, 182, 256, 339, 416, 457, 516, 565
BspACI CCGC 8 cut(s) 53, 268, 404, 492, 502, 627, 720, 777
BspANI GGCC 5 cut(s) 82, 291, 697, 780, 1175
BspCNI CTCAG 5 cut(s) 69, 874, 978, 1151, 1237
BspFNI CGCG 3 cut(s) 270, 492, 720
BspLI GGNNCC 4 cut(s) 219, 258, 292, 1168
BspMAI CTGCAG 1 cut(s) 847
BspMI ACCTGC 2 cut(s) 603, 1090
BspPI GGATC 6 cut(s) 81, 251, 264, 347, 411, 573
BspT107I GGYRCC 1 cut(s) 1166
BspTNI GGTCTC 1 cut(s) 225
BsrFI RCCGGY 4 cut(s) 220, 406, 478, 664
BsrI ACTGG 2 cut(s) 36, 347
BssAI RCCGGY 4 cut(s) 220, 406, 478, 664
BssECI CCNNGG 6 cut(s) 87, 293, 294, 828, 980, 1170
BssMI GATC 8 cut(s) 73, 182, 256, 339, 416, 457, 516, 565
BssNI GRCGYC 3 cut(s) 35, 874, 1167
BssSI CACGAG 2 cut(s) 273, 801
BssT1I CCWWGG 4 cut(s) 87, 828, 980, 1170
Bst2BI CACGAG 2 cut(s) 273, 801
Bst2UI CCWGG 1 cut(s) 295
Bst4CI ACNGT 3 cut(s) 654, 739, 745
Bst6I CTCTTC 1 cut(s) 929
BstACI GRCGYC 3 cut(s) 35, 874, 1167
BstAPI GCANNNNNTGC 1 cut(s) 624
BstBAI YACGTR 1 cut(s) 1148
BstC8I GCNNGC 7 cut(s) 51, 222, 408, 695, 847, 915, 1210
BstDEI CTNAG 5 cut(s) 77, 861, 986, 1138, 1224
BstEII GGTNACC 1 cut(s) 648
BstF5I GGATG 5 cut(s) 83, 180, 403, 822, 885
BstFNI CGCG 3 cut(s) 270, 492, 720
BstH2I RGCGCY 2 cut(s) 50, 1170
BstHHI GCGC 5 cut(s) 49, 272, 435, 492, 1169
BstKTI GATC 8 cut(s) 76, 185, 259, 342, 419, 460, 519, 568
BstMAI GTCTC 2 cut(s) 225, 972
BstMBI GATC 8 cut(s) 73, 182, 256, 339, 416, 457, 516, 565
BstMWI GCNNNNNNNGC 6 cut(s) 23, 32, 317, 441, 624, 758
BstNI CCWGG 1 cut(s) 295
BstNSI RCATGY 2 cut(s) 197, 917
BstPAI GACNNNNGTC 1 cut(s) 34
BstPI GGTNACC 1 cut(s) 648
BstSCI CCNGG 1 cut(s) 293
BstSFI CTRYAG 2 cut(s) 315, 843
BstSLI GKGCMC 1 cut(s) 620
BstUI CGCG 3 cut(s) 270, 492, 720
BstV2I GAAGAC 2 cut(s) 784, 872
BstX2I RGATCY 2 cut(s) 73, 256
BstYI RGATCY 2 cut(s) 73, 256
Bsu36I CCTNAGG 1 cut(s) 1224
BsuRI GGCC 5 cut(s) 82, 291, 697, 780, 1175
BtsCI GGATG 5 cut(s) 83, 180, 403, 822, 885
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 2 cut(s) 75, 744
BveI ACCTGC 2 cut(s) 603, 1090
Cac8I GCNNGC 7 cut(s) 51, 222, 408, 695, 847, 915, 1210
CaiI CAGNNNCTG 1 cut(s) 361
CfoI GCGC 5 cut(s) 49, 272, 435, 492, 1169
Cfr10I RCCGGY 4 cut(s) 220, 406, 478, 664
Cfr13I GGNCC 5 cut(s) 265, 290, 662, 779, 1174
CseI GACGC 2 cut(s) 23, 24
Csp6I GTAC 2 cut(s) 497, 1113
CspAI ACCGGT 1 cut(s) 664
CviAII CATG 7 cut(s) 139, 189, 194, 436, 641, 689, 914
CviQI GTAC 2 cut(s) 497, 1113
DdeI CTNAG 5 cut(s) 77, 861, 986, 1138, 1224
DinI GGCGCC 1 cut(s) 1168
DpnI GATC 8 cut(s) 75, 184, 258, 341, 418, 459, 518, 567
DpnII GATC 8 cut(s) 73, 182, 256, 339, 416, 457, 516, 565
DraIII CACNNNGTG 1 cut(s) 1151
DriI GACNNNNNGTC 2 cut(s) 873, 878
Eam1104I CTCTTC 1 cut(s) 929
Eam1105I GACNNNNNGTC 2 cut(s) 873, 878
EarI CTCTTC 1 cut(s) 929
EciI GGCGGA 1 cut(s) 68
Eco130I CCWWGG 4 cut(s) 87, 828, 980, 1170
Eco147I AGGCCT 1 cut(s) 697
Eco24I GRGCYC 1 cut(s) 313
Eco31I GGTCTC 1 cut(s) 225
Eco47I GGWCC 2 cut(s) 265, 662
Eco57I CTGAAG 1 cut(s) 482
Eco81I CCTNAGG 1 cut(s) 1224
Eco91I GGTNACC 1 cut(s) 648
EcoO65I GGTNACC 1 cut(s) 648
EcoRII CCWGG 1 cut(s) 293
EcoT14I CCWWGG 4 cut(s) 87, 828, 980, 1170
EcoT22I ATGCAT 1 cut(s) 919
EcoT38I GRGCYC 1 cut(s) 313
EgeI GGCGCC 1 cut(s) 1168
EheI GGCGCC 1 cut(s) 1168
ErhI CCWWGG 4 cut(s) 87, 828, 980, 1170
FaeI CATG 7 cut(s) 142, 192, 197, 439, 644, 692, 917
FaqI GGGAC 2 cut(s) 485, 1208
FatI CATG 7 cut(s) 138, 188, 193, 435, 640, 688, 913
FauI CCCGC 2 cut(s) 495, 620
FblI GTMKAC 2 cut(s) 100, 1078
FokI GGATG 5 cut(s) 70, 187, 410, 829, 872
FriOI GRGCYC 1 cut(s) 313
FspAI RTGCGCAY 1 cut(s) 434
FspBI CTAG 2 cut(s) 323, 762
FspI TGCGCA 1 cut(s) 434
GlaI GCGC 5 cut(s) 48, 271, 434, 491, 1168
HaeII RGCGCY 2 cut(s) 50, 1170
HaeIII GGCC 5 cut(s) 82, 291, 697, 780, 1175
HapII CCGG 8 cut(s) 110, 221, 260, 407, 479, 665, 704, 755
HgaI GACGC 2 cut(s) 23, 24
HhaI GCGC 5 cut(s) 49, 272, 435, 492, 1169
Hin1I GRCGYC 3 cut(s) 35, 874, 1167
Hin1II CATG 7 cut(s) 142, 192, 197, 439, 644, 692, 917
Hin6I GCGC 5 cut(s) 47, 270, 433, 490, 1167
HinP1I GCGC 5 cut(s) 47, 270, 433, 490, 1167
HincII GTYRAC 1 cut(s) 1079
HindII GTYRAC 1 cut(s) 1079
HindIII AAGCTT 1 cut(s) 602
HinfI GANTC 4 cut(s) 588, 715, 868, 1214
HpaII CCGG 8 cut(s) 110, 221, 260, 407, 479, 665, 704, 755
HphI GGTGA 5 cut(s) 439, 467, 595, 874, 965
Hpy166II GTNNAC 5 cut(s) 101, 265, 497, 618, 1079
Hpy188I TCNGA 8 cut(s) 78, 256, 416, 421, 462, 864, 890, 972
Hpy188III TCNNGA 1 cut(s) 660
Hpy8I GTNNAC 5 cut(s) 101, 265, 497, 618, 1079
Hpy99I CGWCG 3 cut(s) 40, 43, 876
HpyAV CCTTC 4 cut(s) 457, 866, 1156, 1225
HpyCH4III ACNGT 3 cut(s) 654, 739, 745
HpyCH4IV ACGT 4 cut(s) 160, 389, 874, 1147
HpyCH4V TGCA 7 cut(s) 188, 367, 618, 731, 845, 917, 1019
HpyF10VI GCNNNNNNNGC 6 cut(s) 23, 32, 317, 441, 624, 758
HpyF3I CTNAG 5 cut(s) 77, 861, 986, 1138, 1224
HpySE526I ACGT 4 cut(s) 160, 389, 874, 1147
Hsp92I GRCGYC 3 cut(s) 35, 874, 1167
Hsp92II CATG 7 cut(s) 142, 192, 197, 439, 644, 692, 917
HspAI GCGC 5 cut(s) 47, 270, 433, 490, 1167
KasI GGCGCC 1 cut(s) 1166
KroI GCCGGC 2 cut(s) 220, 406
KroNI GCCGGC 2 cut(s) 222, 408
Kzo9I GATC 8 cut(s) 73, 182, 256, 339, 416, 457, 516, 565
LmnI GCTCC 2 cut(s) 217, 709
LweI GCATC 4 cut(s) 376, 420, 926, 1006
MaeI CTAG 2 cut(s) 323, 762
MaeII ACGT 4 cut(s) 160, 389, 874, 1147
MaeIII GTNAC 6 cut(s) 132, 385, 634, 648, 739, 880
MalI GATC 8 cut(s) 75, 184, 258, 341, 418, 459, 518, 567
MboI GATC 8 cut(s) 73, 182, 256, 339, 416, 457, 516, 565
MfeI CAATTG 1 cut(s) 996
MflI RGATCY 2 cut(s) 73, 256
MhlI GDGCHC 3 cut(s) 313, 620, 754
MluCI AATT 7 cut(s) 521, 769, 894, 924, 996, 1035, 1183
Mly113I GGCGCC 1 cut(s) 1167
MlyI GAGTC 2 cut(s) 862, 1208
MmeI TCCRAC 4 cut(s) 375, 540, 664, 1242
Mph1103I ATGCAT 1 cut(s) 919
MroNI GCCGGC 2 cut(s) 220, 406
MseI TTAA 3 cut(s) 1034, 1095, 1249
MslI CAYNNNNRTG 1 cut(s) 198
MspA1I CMGCKG 2 cut(s) 624, 777
MspI CCGG 8 cut(s) 110, 221, 260, 407, 479, 665, 704, 755
MspR9I CCNGG 1 cut(s) 295
MunI CAATTG 1 cut(s) 996
Mva1269I GAATGC 1 cut(s) 410
MvaI CCWGG 1 cut(s) 295
MvnI CGCG 3 cut(s) 270, 492, 720
MwoI GCNNNNNNNGC 6 cut(s) 23, 32, 317, 441, 624, 758
NaeI GCCGGC 2 cut(s) 222, 408
NarI GGCGCC 1 cut(s) 1167
NdeII GATC 8 cut(s) 73, 182, 256, 339, 416, 457, 516, 565
NgoMIV GCCGGC 2 cut(s) 220, 406
NlaIII CATG 7 cut(s) 142, 192, 197, 439, 644, 692, 917
NlaIV GGNNCC 4 cut(s) 219, 258, 292, 1168
NmuCI GTSAC 2 cut(s) 739, 880
NsbI TGCGCA 1 cut(s) 434
NsiI ATGCAT 1 cut(s) 919
NspI RCATGY 2 cut(s) 197, 917
PaeI GCATGC 1 cut(s) 917
PaqCI CACCTGC 1 cut(s) 603
PasI CCCWGGG 1 cut(s) 294
PceI AGGCCT 1 cut(s) 697
PcsI WCGNNNNNNNCGW 3 cut(s) 280, 348, 968
PctI GAATGC 1 cut(s) 410
PdiI GCCGGC 2 cut(s) 222, 408
PfeI GAWTC 2 cut(s) 588, 715
PinAI ACCGGT 1 cut(s) 664
PleI GAGTC 2 cut(s) 862, 1208
PluTI GGCGCC 1 cut(s) 1170
PpsI GAGTC 2 cut(s) 862, 1208
Ppu21I YACGTR 1 cut(s) 1148
PshAI GACNNNNGTC 1 cut(s) 34
Psp1406I AACGTT 1 cut(s) 160
Psp6I CCWGG 1 cut(s) 293
PspEI GGTNACC 1 cut(s) 648
PspGI CCWGG 1 cut(s) 293
PspN4I GGNNCC 4 cut(s) 219, 258, 292, 1168
PspPI GGNCC 5 cut(s) 265, 290, 662, 779, 1174
PstI CTGCAG 1 cut(s) 847
PstNI CAGNNNCTG 1 cut(s) 361
PsuI RGATCY 2 cut(s) 73, 256
PvuII CAGCTG 1 cut(s) 624
RsaI GTAC 2 cut(s) 498, 1114
RsaNI GTAC 2 cut(s) 497, 1113
RseI CAYNNNNRTG 1 cut(s) 198
SalI GTCGAC 1 cut(s) 1077
SaqAI TTAA 3 cut(s) 1034, 1095, 1249
Sau3AI GATC 8 cut(s) 73, 182, 256, 339, 416, 457, 516, 565
Sau96I GGNCC 5 cut(s) 265, 290, 662, 779, 1174
SchI GAGTC 2 cut(s) 862, 1208
ScrFI CCNGG 1 cut(s) 295
SduI GDGCHC 3 cut(s) 313, 620, 754
SfaNI GCATC 4 cut(s) 376, 420, 926, 1006
SfcI CTRYAG 2 cut(s) 315, 843
SfoI GGCGCC 1 cut(s) 1168
SinI GGWCC 2 cut(s) 265, 662
SmiMI CAYNNNNRTG 1 cut(s) 198
SphI GCATGC 1 cut(s) 917
Sse9I AATT 7 cut(s) 521, 769, 894, 924, 996, 1035, 1183
SseBI AGGCCT 1 cut(s) 697
SsiI CCGC 8 cut(s) 53, 268, 404, 492, 502, 627, 720, 777
SspDI GGCGCC 1 cut(s) 1166
SspI AATATT 1 cut(s) 1012
SspMI CTAG 2 cut(s) 323, 762
StuI AGGCCT 1 cut(s) 697
StyD4I CCNGG 1 cut(s) 293
StyI CCWWGG 4 cut(s) 87, 828, 980, 1170
TaaI ACNGT 3 cut(s) 654, 739, 745
TaiI ACGT 4 cut(s) 163, 392, 877, 1150
TaqI TCGA 7 cut(s) 181, 342, 351, 519, 568, 871, 1078
TaqII GACCGA 1 cut(s) 249
TasI AATT 7 cut(s) 521, 769, 894, 924, 996, 1035, 1183
TatI WGTACW 1 cut(s) 496
TauI GCSGC 2 cut(s) 406, 780
TfiI GAWTC 2 cut(s) 588, 715
Tru1I TTAA 3 cut(s) 1034, 1095, 1249
Tru9I TTAA 3 cut(s) 1034, 1095, 1249
TscAI CASTG 2 cut(s) 75, 744
TseFI GTSAC 2 cut(s) 739, 880
Tsp45I GTSAC 2 cut(s) 739, 880
TspRI CASTG 2 cut(s) 75, 744
VneI GTGCAC 1 cut(s) 616
VpaK11BI GGWCC 2 cut(s) 265, 662
XapI RAATTY 3 cut(s) 521, 769, 1183
XceI RCATGY 2 cut(s) 197, 917
XmiI GTMKAC 2 cut(s) 100, 1078
XspI CTAG 2 cut(s) 323, 762
ZraI GACGTC 1 cut(s) 875
Zsp2I ATGCAT 1 cut(s) 919
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.