Rroxscaffold_7G00191310

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000308
Physical Location & Seq
Forward (+)
31829029 .. 31829454
426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00191310.1

Sequence Viewer

Length: 426 bp
ATGTTCGGGTCGGCATGGCGAAGCGATGACGGATCGAGTGTCGAAGAGATCGGAGAAGATGACAAGGTCTTGTTTACTTTCACGGACCCATCGGATGTGGACAGAGTATGGAAAGGAGGACCATGGGGCCGCAATAGAGCTCCGATAGCCCTAGCGCCATATGATGGCGCCGGTTTGCGACGACGTGCCCCTGAAGAAATCATCCTACCGGATGACGCCGCAAGGAGTACCGTCGGCGTTCGGTTTGAGCGCATCATGTGTCCGATCGGAAGTACACCGGGAGAGTTCAAAGAATATGACCGACATGCTTTCCGGACCCGAGTCCTGCGTATTAGAGTCGAGATCAATTATGAGAAGCCTTTACTCTTTCGTCGGCGTTTCTTGGTAGAAGACGAAGTTCGGATCATGGTGCATGCATTGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

16.21

Weight (kDa)

6.16

Isoelectric Point (pI)

56.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 167
AccB7I CCANNNNNTGG 1 cut(s) 164
AccIII TCCGGA 1 cut(s) 312
AciI CCGC 2 cut(s) 130, 219
AclWI GGATC 2 cut(s) 40, 410
AcuI CTGAAG 1 cut(s) 213
AcyI GRCGYC 2 cut(s) 168, 216
AfaI GTAC 2 cut(s) 229, 274
AfiI CCNNNNNNNGG 1 cut(s) 164
AgsI TTSAA 1 cut(s) 289
AjiI CACGTC 1 cut(s) 185
AluBI AGCT 1 cut(s) 140
AluI AGCT 1 cut(s) 140
Alw21I GWGCWC 1 cut(s) 142
AlwI GGATC 2 cut(s) 40, 410
Ama87I CYCGRG 1 cut(s) 318
Aor13HI TCCGGA 1 cut(s) 312
AoxI GGCC 1 cut(s) 127
AspLEI GCGC 3 cut(s) 157, 170, 252
AspS9I GGNCC 4 cut(s) 85, 119, 127, 315
AsuC2I CCSGG 1 cut(s) 279
AvaI CYCGRG 1 cut(s) 318
AvaII GGWCC 3 cut(s) 85, 119, 315
BaeGI GKGCMC 1 cut(s) 190
BanI GGYRCC 1 cut(s) 167
BanII GRGCYC 1 cut(s) 142
BbsI GAAGAC 1 cut(s) 396
Bbv12I GWGCWC 1 cut(s) 142
BccI CCATC 2 cut(s) 97, 158
BcnI CCSGG 1 cut(s) 279
BfaI CTAG 1 cut(s) 152
BfoI RGCGCY 2 cut(s) 158, 171
BisI GCNGC 2 cut(s) 130, 219
BlsI GCNGC 2 cut(s) 131, 220
Bme1390I CCNGG 1 cut(s) 279
Bme18I GGWCC 3 cut(s) 85, 119, 315
BmeT110I CYCGRG 1 cut(s) 318
BmgBI CACGTC 1 cut(s) 185
BmgT120I GGNCC 4 cut(s) 85, 119, 127, 315
BmiI GGNNCC 4 cut(s) 87, 128, 169, 317
BmrFI CCNGG 1 cut(s) 279
BmsI GCATC 1 cut(s) 261
BoxI GACNNNNGTC 1 cut(s) 320
BpiI GAAGAC 1 cut(s) 396
BpuMI CCSGG 1 cut(s) 279
BsaHI GRCGYC 2 cut(s) 168, 216
BsaJI CCNNGG 1 cut(s) 122
BsaWI WCCGGW 2 cut(s) 208, 312
Bsc4I CCNNNNNNNGG 1 cut(s) 164
Bse118I RCCGGY 1 cut(s) 170
BseAI TCCGGA 1 cut(s) 312
BseDI CCNNGG 1 cut(s) 122
BseGI GGATG 3 cut(s) 100, 201, 217
BseLI CCNNNNNNNGG 1 cut(s) 164
BseSI GKGCMC 1 cut(s) 190
Bsh1285I CGRYCG 1 cut(s) 267
BshFI GGCC 1 cut(s) 129
BshNI GGYRCC 1 cut(s) 167
BsiEI CGRYCG 1 cut(s) 267
BsiHKAI GWGCWC 1 cut(s) 142
BsiHKCI CYCGRG 1 cut(s) 318
BsiSI CCGG 4 cut(s) 171, 209, 278, 313
BslI CCNNNNNNNGG 1 cut(s) 164
BsnI GGCC 1 cut(s) 129
BsoBI CYCGRG 1 cut(s) 318
Bsp1286I GDGCHC 2 cut(s) 142, 190
Bsp13I TCCGGA 1 cut(s) 312
Bsp143I GATC 5 cut(s) 32, 48, 264, 342, 402
Bsp19I CCATGG 1 cut(s) 122
BspACI CCGC 2 cut(s) 130, 219
BspANI GGCC 1 cut(s) 129
BspEI TCCGGA 1 cut(s) 312
BspLI GGNNCC 4 cut(s) 87, 128, 169, 317
BspPI GGATC 2 cut(s) 40, 410
BspT107I GGYRCC 1 cut(s) 167
BsrFI RCCGGY 1 cut(s) 170
BssAI RCCGGY 1 cut(s) 170
BssECI CCNNGG 1 cut(s) 122
BssMI GATC 5 cut(s) 32, 48, 264, 342, 402
BssNI GRCGYC 2 cut(s) 168, 216
BssT1I CCWWGG 1 cut(s) 122
Bst4CI ACNGT 1 cut(s) 232
Bst6I CTCTTC 1 cut(s) 39
BstACI GRCGYC 2 cut(s) 168, 216
BstC8I GCNNGC 1 cut(s) 414
BstDSI CCRYGG 1 cut(s) 122
BstF5I GGATG 3 cut(s) 100, 201, 217
BstH2I RGCGCY 2 cut(s) 158, 171
BstHHI GCGC 3 cut(s) 157, 170, 252
BstKTI GATC 5 cut(s) 35, 51, 267, 345, 405
BstMBI GATC 5 cut(s) 32, 48, 264, 342, 402
BstMCI CGRYCG 1 cut(s) 267
BstMWI GCNNNNNNNGC 1 cut(s) 146
BstNSI RCATGY 2 cut(s) 308, 416
BstPAI GACNNNNGTC 1 cut(s) 320
BstSCI CCNGG 1 cut(s) 277
BstSLI GKGCMC 1 cut(s) 190
BstV2I GAAGAC 1 cut(s) 396
BsuRI GGCC 1 cut(s) 129
BtgI CCRYGG 1 cut(s) 122
BtgZI GCGATG 1 cut(s) 39
BtrI CACGTC 1 cut(s) 185
BtsCI GGATG 3 cut(s) 100, 201, 217
Cac8I GCNNGC 1 cut(s) 414
CfoI GCGC 3 cut(s) 157, 170, 252
Cfr10I RCCGGY 1 cut(s) 170
Cfr13I GGNCC 4 cut(s) 85, 119, 127, 315
CseI GACGC 1 cut(s) 224
Csp6I GTAC 2 cut(s) 228, 273
CviAII CATG 6 cut(s) 15, 123, 256, 305, 406, 413
CviJI RGCY 4 cut(s) 129, 140, 149, 358
CviKI_1 RGCY 4 cut(s) 129, 140, 149, 358
CviQI GTAC 2 cut(s) 228, 273
DinI GGCGCC 1 cut(s) 169
DpnI GATC 5 cut(s) 34, 50, 266, 344, 404
DpnII GATC 5 cut(s) 32, 48, 264, 342, 402
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
Ecl136II GAGCTC 1 cut(s) 140
Eco130I CCWWGG 1 cut(s) 122
Eco24I GRGCYC 1 cut(s) 142
Eco47I GGWCC 3 cut(s) 85, 119, 315
Eco53kI GAGCTC 1 cut(s) 140
Eco57I CTGAAG 1 cut(s) 213
Eco88I CYCGRG 1 cut(s) 318
EcoICRI GAGCTC 1 cut(s) 140
EcoT14I CCWWGG 1 cut(s) 122
EcoT22I ATGCAT 1 cut(s) 418
EcoT38I GRGCYC 1 cut(s) 142
EgeI GGCGCC 1 cut(s) 169
EheI GGCGCC 1 cut(s) 169
ErhI CCWWGG 1 cut(s) 122
FaeI CATG 6 cut(s) 18, 126, 259, 308, 409, 416
FatI CATG 6 cut(s) 14, 122, 255, 304, 405, 412
FauNDI CATATG 1 cut(s) 160
Fnu4HI GCNGC 2 cut(s) 130, 219
FokI GGATG 3 cut(s) 107, 188, 224
FriOI GRGCYC 1 cut(s) 142
Fsp4HI GCNGC 2 cut(s) 130, 219
FspBI CTAG 1 cut(s) 152
GlaI GCGC 3 cut(s) 156, 169, 251
GluI GCNGC 2 cut(s) 130, 219
HaeII RGCGCY 2 cut(s) 158, 171
HaeIII GGCC 1 cut(s) 129
HapII CCGG 4 cut(s) 171, 209, 278, 313
HgaI GACGC 1 cut(s) 224
HhaI GCGC 3 cut(s) 157, 170, 252
Hin1I GRCGYC 2 cut(s) 168, 216
Hin1II CATG 6 cut(s) 18, 126, 259, 308, 409, 416
Hin6I GCGC 3 cut(s) 155, 168, 250
HinP1I GCGC 3 cut(s) 155, 168, 250
HinfI GANTC 2 cut(s) 321, 336
HpaII CCGG 4 cut(s) 171, 209, 278, 313
Hpy166II GTNNAC 3 cut(s) 75, 100, 275
Hpy188I TCNGA 6 cut(s) 53, 94, 144, 264, 269, 402
Hpy188III TCNNGA 2 cut(s) 313, 340
Hpy8I GTNNAC 3 cut(s) 75, 100, 275
Hpy99I CGWCG 4 cut(s) 183, 186, 236, 375
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4IV ACGT 1 cut(s) 184
HpyCH4V TGCA 2 cut(s) 412, 416
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
HpySE526I ACGT 1 cut(s) 184
Hsp92I GRCGYC 2 cut(s) 168, 216
Hsp92II CATG 6 cut(s) 18, 126, 259, 308, 409, 416
HspAI GCGC 3 cut(s) 155, 168, 250
KasI GGCGCC 1 cut(s) 167
Kpn2I TCCGGA 1 cut(s) 312
Kzo9I GATC 5 cut(s) 32, 48, 264, 342, 402
LmnI GCTCC 1 cut(s) 145
LpnPI CCDG 6 cut(s) 184, 204, 222, 291, 326, 338
LweI GCATC 1 cut(s) 261
MaeI CTAG 1 cut(s) 152
MaeII ACGT 1 cut(s) 184
MalI GATC 5 cut(s) 34, 50, 266, 344, 404
MboI GATC 5 cut(s) 32, 48, 264, 342, 402
MboII GAAGA 4 cut(s) 56, 68, 206, 401
MhlI GDGCHC 2 cut(s) 142, 190
MluCI AATT 1 cut(s) 346
Mly113I GGCGCC 1 cut(s) 168
MlyI GAGTC 2 cut(s) 330, 345
MnlI CCTC 1 cut(s) 110
Mph1103I ATGCAT 1 cut(s) 418
MroI TCCGGA 1 cut(s) 312
MslI CAYNNNNRTG 1 cut(s) 421
MspI CCGG 4 cut(s) 171, 209, 278, 313
MspR9I CCNGG 1 cut(s) 279
MwoI GCNNNNNNNGC 1 cut(s) 146
NarI GGCGCC 1 cut(s) 168
NciI CCSGG 1 cut(s) 279
NcoI CCATGG 1 cut(s) 122
NdeI CATATG 1 cut(s) 160
NdeII GATC 5 cut(s) 32, 48, 264, 342, 402
NlaIII CATG 6 cut(s) 18, 126, 259, 308, 409, 416
NlaIV GGNNCC 4 cut(s) 87, 128, 169, 317
NsiI ATGCAT 1 cut(s) 418
NspI RCATGY 2 cut(s) 308, 416
PaeI GCATGC 1 cut(s) 416
PflFI GACNNNGTC 1 cut(s) 65
PflMI CCANNNNNTGG 1 cut(s) 164
PkrI GCNGC 2 cut(s) 131, 220
Ple19I CGATCG 1 cut(s) 267
PleI GAGTC 2 cut(s) 329, 344
PluTI GGCGCC 1 cut(s) 171
PpsI GAGTC 2 cut(s) 329, 344
PshAI GACNNNNGTC 1 cut(s) 320
Psp124BI GAGCTC 1 cut(s) 142
PspN4I GGNNCC 4 cut(s) 87, 128, 169, 317
PspPI GGNCC 4 cut(s) 85, 119, 127, 315
PsyI GACNNNGTC 1 cut(s) 65
PvuI CGATCG 1 cut(s) 267
RsaI GTAC 2 cut(s) 229, 274
RsaNI GTAC 2 cut(s) 228, 273
RseI CAYNNNNRTG 1 cut(s) 421
SacI GAGCTC 1 cut(s) 142
SatI GCNGC 2 cut(s) 130, 219
Sau3AI GATC 5 cut(s) 32, 48, 264, 342, 402
Sau96I GGNCC 4 cut(s) 85, 119, 127, 315
SchI GAGTC 2 cut(s) 330, 345
ScrFI CCNGG 1 cut(s) 279
SduI GDGCHC 2 cut(s) 142, 190
SetI ASST 3 cut(s) 69, 142, 187
SfaNI GCATC 1 cut(s) 261
SfoI GGCGCC 1 cut(s) 169
SinI GGWCC 3 cut(s) 85, 119, 315
SmiMI CAYNNNNRTG 1 cut(s) 421
SphI GCATGC 1 cut(s) 416
Sse9I AATT 1 cut(s) 346
SsiI CCGC 2 cut(s) 130, 219
SspDI GGCGCC 1 cut(s) 167
SspMI CTAG 1 cut(s) 152
SstI GAGCTC 1 cut(s) 142
StyD4I CCNGG 1 cut(s) 277
StyI CCWWGG 1 cut(s) 122
TaaI ACNGT 1 cut(s) 232
TaiI ACGT 1 cut(s) 187
TaqI TCGA 3 cut(s) 35, 42, 339
TaqII GACCGA 1 cut(s) 315
TasI AATT 1 cut(s) 346
TatI WGTACW 1 cut(s) 272
TauI GCSGC 2 cut(s) 132, 221
TspGWI ACGGA 2 cut(s) 45, 98
Tth111I GACNNNGTC 1 cut(s) 65
Van91I CCANNNNNTGG 1 cut(s) 164
VpaK11BI GGWCC 3 cut(s) 85, 119, 315
XceI RCATGY 2 cut(s) 308, 416
XspI CTAG 1 cut(s) 152
Zsp2I ATGCAT 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.