Rmu_sc0000299.1_g000003

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000299.1
OG0000308
Physical Location & Seq
Forward (+)
19722 .. 20780
1059 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000299.1_g000003.1.cds

Sequence Viewer

Length: 1059 bp
atggaagataaccgtgtgttattctctttttcagatccggccgataaaggtagggtttggaagggagggccatgggggttcaataaggctccaattgcacttgcagagtacgatggcatcggacggatctcggaggtgccattgaggacgtcgtcgtactggatgacgttattgggggttcctccggcctttcgatctgaaagaattatgaggcttattggtagcaccgtgggcgagttcaaagagtttgataaaccagctttccggcaacggactctgcgcatacgggtggagatcgagtatgcgaaacctatattgttcacacagaggttctgggttgaagatgacgtccagtttctagtcaagttcaaatatgataagatttttggacggtgtggacggtgtggttttgttatccacgttggcctcccatgctccggcccggaactggaggaggctgaagaggaggttgcgggagtagtggcacaaccatctaccttaacgatccttcgtgaagaacctgggaccagctccaatgtatctagggttccggctcctggcccgactctaatcttcaaagcaacaatacctagcactattccagagttctgtctccctccagaagtagttgcttcccagcgagcaaagagacaggtacagattagggagcttacagaaccacgacaccaggtcgagtctgtccttggtcaacgccgggatagagatggtgatgaggtacttatttctcccaagaaactgaaattgagcttggctattggcaaaaagaatctggatgcagtcactatgggactgttggaagggccatcaaagcagactaaacaactgaacagaaagagaggccgacctctaggaagtgtgaataaattgccgtatggcatggcgggaaaagggaaaaatcctaagaatgagggtgactcagggaagaaggttccaaacaagagcaggaagaccaacctgatgccgaggttgttagctgctgaaagaattgaagctggtactctctccaaccctaaggggaaggagatggtgctgtcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

352

Amino Acids

39.18

Weight (kDa)

9.76

Isoelectric Point (pI)

44.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 152, 351
Acc16I TGCGCA 1 cut(s) 281
AccB1I GGYRCC 1 cut(s) 136
AciI CCGC 2 cut(s) 473, 902
AclWI GGATC 3 cut(s) 29, 134, 499
AcoI YGGCCR 1 cut(s) 39
AcuI CTGAAG 1 cut(s) 480
AcyI GRCGYC 2 cut(s) 149, 348
AfaI GTAC 5 cut(s) 110, 158, 657, 738, 1018
AfiI CCNNNNNNNGG 3 cut(s) 437, 448, 557
AgsI TTSAA 6 cut(s) 82, 241, 341, 370, 577, 1010
AhdI GACNNNNNGTC 1 cut(s) 689
AjnI CCWGG 3 cut(s) 520, 556, 687
AjuI GAANNNNNNNTTGG 2 cut(s) 752, 784
AluBI AGCT 6 cut(s) 260, 531, 670, 768, 995, 1013
AluI AGCT 6 cut(s) 260, 531, 670, 768, 995, 1013
Alw26I GTCTC 2 cut(s) 617, 643
AlwI GGATC 3 cut(s) 29, 134, 499
AoxI GGCC 8 cut(s) 39, 68, 186, 424, 439, 559, 821, 859
ApeKI GCWGC 1 cut(s) 995
AspLEI GCGC 1 cut(s) 282
AspS9I GGNCC 5 cut(s) 68, 440, 525, 560, 821
AsuC2I CCSGG 2 cut(s) 443, 716
AsuHPI GGTGA 2 cut(s) 740, 944
AvaII GGWCC 1 cut(s) 525
AxyI CCTNAGG 1 cut(s) 1032
BanI GGYRCC 1 cut(s) 136
BbsI GAAGAC 1 cut(s) 974
BbvI GCAGC 1 cut(s) 982
BccI CCATC 5 cut(s) 107, 499, 719, 832, 1039
BceAI ACGGC 1 cut(s) 874
BciT130I CCWGG 3 cut(s) 522, 558, 689
BcnI CCSGG 2 cut(s) 443, 716
BcoDI GTCTC 2 cut(s) 617, 643
BfaI CTAG 4 cut(s) 359, 543, 591, 869
BisI GCNGC 1 cut(s) 996
BlsI GCNGC 1 cut(s) 997
Bme1390I CCNGG 5 cut(s) 443, 522, 558, 689, 716
Bme18I GGWCC 1 cut(s) 525
BmeRI GACNNNNNGTC 1 cut(s) 689
BmgT120I GGNCC 5 cut(s) 68, 440, 525, 560, 821
BmiI GGNNCC 7 cut(s) 90, 138, 180, 526, 549, 555, 951
BmrFI CCNGG 5 cut(s) 443, 522, 558, 689, 716
BmsI GCATC 3 cut(s) 126, 784, 969
BpiI GAAGAC 1 cut(s) 974
BplI GAGNNNNNCTC 2 cut(s) 920, 952
BpmI CTGGAG 2 cut(s) 470, 603
BpuMI CCSGG 2 cut(s) 443, 716
BsaHI GRCGYC 2 cut(s) 149, 348
BsaJI CCNNGG 5 cut(s) 71, 228, 521, 703, 983
BsaXI ACNNNNNCTCC 2 cut(s) 284, 314
Bsc4I CCNNNNNNNGG 3 cut(s) 437, 448, 557
Bse1I ACTGG 3 cut(s) 164, 352, 453
Bse21I CCTNAGG 1 cut(s) 1032
BseBI CCWGG 3 cut(s) 522, 558, 689
BseDI CCNNGG 5 cut(s) 71, 228, 521, 703, 983
BseGI GGATG 2 cut(s) 168, 799
BseLI CCNNNNNNNGG 3 cut(s) 437, 448, 557
BseMII CTCAG 1 cut(s) 951
BseNI ACTGG 3 cut(s) 164, 352, 453
BseRI GAGGAG 2 cut(s) 467, 479
BseX3I CGGCCG 1 cut(s) 39
BseXI GCAGC 1 cut(s) 982
BseYI CCCAGC 1 cut(s) 636
Bsh1285I CGRYCG 1 cut(s) 42
BshFI GGCC 8 cut(s) 41, 70, 188, 426, 441, 561, 823, 861
BshNI GGYRCC 1 cut(s) 136
BsiEI CGRYCG 1 cut(s) 42
BsiSI CCGG 7 cut(s) 38, 185, 265, 438, 443, 551, 715
BslFI GGGAC 2 cut(s) 538, 822
BslI CCNNNNNNNGG 3 cut(s) 437, 448, 557
BsmAI GTCTC 2 cut(s) 617, 643
BsmFI GGGAC 2 cut(s) 538, 822
BsnI GGCC 8 cut(s) 41, 70, 188, 426, 441, 561, 823, 861
Bsp143I GATC 5 cut(s) 34, 126, 194, 294, 504
Bsp19I CCATGG 1 cut(s) 71
BspACI CCGC 2 cut(s) 473, 902
BspANI GGCC 8 cut(s) 41, 70, 188, 426, 441, 561, 823, 861
BspCNI CTCAG 1 cut(s) 950
BspLI GGNNCC 7 cut(s) 90, 138, 180, 526, 549, 555, 951
BspPI GGATC 3 cut(s) 29, 134, 499
BspT107I GGYRCC 1 cut(s) 136
BsrI ACTGG 3 cut(s) 164, 352, 453
BssECI CCNNGG 5 cut(s) 71, 228, 521, 703, 983
BssMI GATC 5 cut(s) 34, 126, 194, 294, 504
BssNI GRCGYC 2 cut(s) 149, 348
BssT1I CCWWGG 2 cut(s) 71, 703
Bst2UI CCWGG 3 cut(s) 522, 558, 689
Bst4CI ACNGT 5 cut(s) 14, 229, 393, 402, 813
Bst6I CTCTTC 1 cut(s) 456
BstACI GRCGYC 2 cut(s) 149, 348
BstC8I GCNNGC 1 cut(s) 642
BstDEI CTNAG 3 cut(s) 921, 937, 1032
BstDSI CCRYGG 2 cut(s) 71, 228
BstF5I GGATG 2 cut(s) 168, 799
BstHHI GCGC 1 cut(s) 282
BstKTI GATC 5 cut(s) 37, 129, 197, 297, 507
BstMAI GTCTC 2 cut(s) 617, 643
BstMBI GATC 5 cut(s) 34, 126, 194, 294, 504
BstMCI CGRYCG 1 cut(s) 42
BstMWI GCNNNNNNNGC 4 cut(s) 95, 231, 432, 829
BstNI CCWGG 3 cut(s) 522, 558, 689
BstSCI CCNGG 5 cut(s) 441, 520, 556, 687, 714
BstV1I GCAGC 1 cut(s) 982
BstV2I GAAGAC 1 cut(s) 974
BstX2I RGATCY 2 cut(s) 34, 126
BstYI RGATCY 2 cut(s) 34, 126
BstZI CGGCCG 1 cut(s) 39
Bsu36I CCTNAGG 1 cut(s) 1032
BsuRI GGCC 8 cut(s) 41, 70, 188, 426, 441, 561, 823, 861
BtgI CCRYGG 2 cut(s) 71, 228
BtsCI GGATG 2 cut(s) 168, 799
Cac8I GCNNGC 1 cut(s) 642
CfoI GCGC 1 cut(s) 282
Cfr13I GGNCC 5 cut(s) 68, 440, 525, 560, 821
CsiI ACCWGGT 1 cut(s) 687
Csp6I GTAC 5 cut(s) 109, 157, 656, 737, 1017
CviAII CATG 3 cut(s) 72, 432, 898
CviQI GTAC 5 cut(s) 109, 157, 656, 737, 1017
DdeI CTNAG 3 cut(s) 921, 937, 1032
DpnI GATC 5 cut(s) 36, 128, 196, 296, 506
DpnII GATC 5 cut(s) 34, 126, 194, 294, 504
DriI GACNNNNNGTC 1 cut(s) 689
EaeI YGGCCR 1 cut(s) 39
EagI CGGCCG 1 cut(s) 39
Eam1104I CTCTTC 1 cut(s) 456
Eam1105I GACNNNNNGTC 1 cut(s) 689
EarI CTCTTC 1 cut(s) 456
EclXI CGGCCG 1 cut(s) 39
Eco130I CCWWGG 2 cut(s) 71, 703
Eco47I GGWCC 1 cut(s) 525
Eco52I CGGCCG 1 cut(s) 39
Eco57I CTGAAG 1 cut(s) 480
Eco81I CCTNAGG 1 cut(s) 1032
EcoRII CCWGG 3 cut(s) 520, 556, 687
EcoT14I CCWWGG 2 cut(s) 71, 703
ErhI CCWWGG 2 cut(s) 71, 703
FaeI CATG 3 cut(s) 75, 435, 901
FaqI GGGAC 2 cut(s) 538, 822
FatI CATG 3 cut(s) 71, 431, 897
FauI CCCGC 2 cut(s) 466, 895
Fnu4HI GCNGC 1 cut(s) 996
FokI GGATG 2 cut(s) 175, 806
Fsp4HI GCNGC 1 cut(s) 996
FspBI CTAG 4 cut(s) 359, 543, 591, 869
FspI TGCGCA 1 cut(s) 281
GlaI GCGC 1 cut(s) 281
GluI GCNGC 1 cut(s) 996
GsaI CCCAGC 1 cut(s) 640
GsuI CTGGAG 2 cut(s) 470, 603
HaeIII GGCC 8 cut(s) 41, 70, 188, 426, 441, 561, 823, 861
HapII CCGG 7 cut(s) 38, 185, 265, 438, 443, 551, 715
HhaI GCGC 1 cut(s) 282
Hin1I GRCGYC 2 cut(s) 149, 348
Hin1II CATG 3 cut(s) 75, 435, 901
Hin6I GCGC 1 cut(s) 280
HinP1I GCGC 1 cut(s) 280
HincII GTYRAC 1 cut(s) 710
HindII GTYRAC 1 cut(s) 710
HinfI GANTC 5 cut(s) 274, 565, 695, 787, 935
HpaII CCGG 7 cut(s) 38, 185, 265, 438, 443, 551, 715
HphI GGTGA 2 cut(s) 740, 944
Hpy166II GTNNAC 3 cut(s) 321, 398, 710
Hpy188I TCNGA 4 cut(s) 34, 122, 133, 199
Hpy188III TCNNGA 4 cut(s) 512, 602, 620, 791
Hpy8I GTNNAC 3 cut(s) 321, 398, 710
Hpy99I CGWCG 2 cut(s) 154, 157
HpyAV CCTTC 5 cut(s) 55, 518, 812, 940, 1033
HpyCH4III ACNGT 5 cut(s) 14, 229, 393, 402, 813
HpyCH4IV ACGT 4 cut(s) 149, 167, 348, 420
HpyCH4V TGCA 3 cut(s) 98, 104, 797
HpyF10VI GCNNNNNNNGC 4 cut(s) 95, 231, 432, 829
HpyF3I CTNAG 3 cut(s) 921, 937, 1032
HpySE526I ACGT 4 cut(s) 149, 167, 348, 420
Hsp92I GRCGYC 2 cut(s) 149, 348
Hsp92II CATG 3 cut(s) 75, 435, 901
HspAI GCGC 1 cut(s) 280
Kzo9I GATC 5 cut(s) 34, 126, 194, 294, 504
LmnI GCTCC 5 cut(s) 94, 440, 536, 559, 667
Lsp1109I GCAGC 1 cut(s) 982
LweI GCATC 3 cut(s) 126, 784, 969
MabI ACCWGGT 1 cut(s) 687
MaeI CTAG 4 cut(s) 359, 543, 591, 869
MaeII ACGT 4 cut(s) 149, 167, 348, 420
MaeIII GTNAC 2 cut(s) 799, 932
MalI GATC 5 cut(s) 36, 128, 196, 296, 506
MboI GATC 5 cut(s) 34, 126, 194, 294, 504
MboII GAAGA 7 cut(s) 17, 353, 473, 527, 565, 955, 979
MfeI CAATTG 1 cut(s) 93
MflI RGATCY 2 cut(s) 34, 126
MluCI AATT 5 cut(s) 93, 204, 761, 884, 1005
MlyI GAGTC 4 cut(s) 268, 559, 704, 929
MmeI TCCRAC 2 cut(s) 795, 1050
MseI TTAA 2 cut(s) 500, 1057
MslI CAYNNNNRTG 1 cut(s) 287
MspI CCGG 7 cut(s) 38, 185, 265, 438, 443, 551, 715
MspR9I CCNGG 5 cut(s) 443, 522, 558, 689, 716
MunI CAATTG 1 cut(s) 93
MvaI CCWGG 3 cut(s) 522, 558, 689
MwoI GCNNNNNNNGC 4 cut(s) 95, 231, 432, 829
NciI CCSGG 2 cut(s) 443, 716
NcoI CCATGG 1 cut(s) 71
NdeII GATC 5 cut(s) 34, 126, 194, 294, 504
NlaIII CATG 3 cut(s) 75, 435, 901
NlaIV GGNNCC 7 cut(s) 90, 138, 180, 526, 549, 555, 951
NmeAIII GCCGAG 1 cut(s) 1008
NmuCI GTSAC 2 cut(s) 799, 932
NsbI TGCGCA 1 cut(s) 281
PfeI GAWTC 1 cut(s) 787
PflFI GACNNNGTC 1 cut(s) 151
PkrI GCNGC 1 cut(s) 997
PleI GAGTC 4 cut(s) 268, 559, 703, 929
PpsI GAGTC 4 cut(s) 268, 559, 703, 929
Psp6I CCWGG 3 cut(s) 520, 556, 687
PspFI CCCAGC 1 cut(s) 636
PspGI CCWGG 3 cut(s) 520, 556, 687
PspN4I GGNNCC 7 cut(s) 90, 138, 180, 526, 549, 555, 951
PspPI GGNCC 5 cut(s) 68, 440, 525, 560, 821
PsrI GAACNNNNNNTAC 2 cut(s) 531, 563
PsuI RGATCY 2 cut(s) 34, 126
PsyI GACNNNGTC 1 cut(s) 151
RsaI GTAC 5 cut(s) 110, 158, 657, 738, 1018
RsaNI GTAC 5 cut(s) 109, 157, 656, 737, 1017
RseI CAYNNNNRTG 1 cut(s) 287
SaqAI TTAA 2 cut(s) 500, 1057
SatI GCNGC 1 cut(s) 996
Sau3AI GATC 5 cut(s) 34, 126, 194, 294, 504
Sau96I GGNCC 5 cut(s) 68, 440, 525, 560, 821
SchI GAGTC 4 cut(s) 268, 559, 704, 929
ScrFI CCNGG 5 cut(s) 443, 522, 558, 689, 716
SexAI ACCWGGT 1 cut(s) 687
SfaNI GCATC 3 cut(s) 126, 784, 969
SinI GGWCC 1 cut(s) 525
SmiMI CAYNNNNRTG 1 cut(s) 287
Sse9I AATT 5 cut(s) 93, 204, 761, 884, 1005
SsiI CCGC 2 cut(s) 473, 902
SspMI CTAG 4 cut(s) 359, 543, 591, 869
StyD4I CCNGG 5 cut(s) 441, 520, 556, 687, 714
StyI CCWWGG 2 cut(s) 71, 703
TaaI ACNGT 5 cut(s) 14, 229, 393, 402, 813
TaiI ACGT 4 cut(s) 152, 170, 351, 423
TaqI TCGA 3 cut(s) 193, 297, 693
TasI AATT 5 cut(s) 93, 204, 761, 884, 1005
TfiI GAWTC 1 cut(s) 787
Tru1I TTAA 2 cut(s) 500, 1057
Tru9I TTAA 2 cut(s) 500, 1057
TseFI GTSAC 2 cut(s) 799, 932
TseI GCWGC 1 cut(s) 995
Tsp45I GTSAC 2 cut(s) 799, 932
TspGWI ACGGA 2 cut(s) 139, 286
Tth111I GACNNNGTC 1 cut(s) 151
VpaK11BI GGWCC 1 cut(s) 525
XspI CTAG 4 cut(s) 359, 543, 591, 869
ZraI GACGTC 2 cut(s) 150, 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.