Rmu_sc0008714.1_g000004

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008714.1
OG0000308
Physical Location & Seq
Reverse (-)
26651 .. 27193
543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008714.1_g000004.1.cds

Sequence Viewer

Length: 543 bp
atggcaattgatgcaatggtagccagcttggcctcctccctagcgctggctgatggaaagaaactagtgggcctacgtccatcaaaaggattgagacaacttgaagcattcatggtagggaagctacttacggtgtgggaatattctcgtcactctttccttggtatgttcagatctgcatggagaatcaatggtagattgaatgttgaagagctcagagaagatgaaagggtcttgttcactttcacatatcttcatgatgtggatagggtttggaaaggaggaccatggggatacaaccgagctcctatagctctcgcaccatatgacggtgttagtcgggcaagggagatatcactgaagaaatcatcctattggatgacactgcaaggagtgccaccggccttcagatatgaacatattatgggcttgattgggagtacgctaggcgagttcatggagtttgatcgctcgaccttccggactcgagtcttgcgcatcagggtcgagattgattatgccaagcctctcatgtttcattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

180

Amino Acids

20.72

Weight (kDa)

9.81

Isoelectric Point (pI)

38.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 497
AccIII TCCGGA 1 cut(s) 480
AcuI CTGAAG 2 cut(s) 380, 391
AfaI GTAC 1 cut(s) 442
AfeI AGCGCT 1 cut(s) 45
AfiI CCNNNNNNNGG 3 cut(s) 46, 86, 329
AgsI TTSAA 3 cut(s) 104, 202, 209
AhlI ACTAGT 1 cut(s) 64
AluBI AGCT 5 cut(s) 27, 124, 214, 305, 314
AluI AGCT 5 cut(s) 27, 124, 214, 305, 314
Alw21I GWGCWC 2 cut(s) 216, 307
Alw26I GTCTC 1 cut(s) 88
Ama87I CYCGRG 1 cut(s) 486
Aor13HI TCCGGA 1 cut(s) 480
Aor51HI AGCGCT 1 cut(s) 45
AoxI GGCC 3 cut(s) 30, 70, 402
AspLEI GCGC 2 cut(s) 46, 498
AspS9I GGNCC 2 cut(s) 70, 284
AvaI CYCGRG 1 cut(s) 486
AvaII GGWCC 1 cut(s) 284
BanII GRGCYC 2 cut(s) 216, 307
Bbv12I GWGCWC 2 cut(s) 216, 307
BccI CCATC 2 cut(s) 47, 88
BcgI CGANNNNNNTGC 2 cut(s) 487, 521
BciVI GTATCC 1 cut(s) 287
BcoDI GTCTC 1 cut(s) 88
BcuI ACTAGT 1 cut(s) 64
BfaI CTAG 3 cut(s) 41, 65, 446
BfmI CTRYAG 1 cut(s) 309
BfoI RGCGCY 1 cut(s) 47
BfuI GTATCC 1 cut(s) 287
BglI GCCNNNNNGGC 1 cut(s) 29
BglII AGATCT 1 cut(s) 173
Bme18I GGWCC 1 cut(s) 284
BmeT110I CYCGRG 1 cut(s) 486
BmgT120I GGNCC 2 cut(s) 70, 284
BmsI GCATC 1 cut(s) 507
BoxI GACNNNNGTC 1 cut(s) 488
BsaJI CCNNGG 2 cut(s) 160, 287
BsaWI WCCGGW 1 cut(s) 480
Bsc4I CCNNNNNNNGG 3 cut(s) 46, 86, 329
Bse118I RCCGGY 1 cut(s) 400
Bse3DI GCAATG 1 cut(s) 21
BseAI TCCGGA 1 cut(s) 480
BseDI CCNNGG 2 cut(s) 160, 287
BseGI GGATG 2 cut(s) 368, 384
BseLI CCNNNNNNNGG 3 cut(s) 46, 86, 329
BseMI GCAATG 1 cut(s) 21
BseMII CTCAG 1 cut(s) 229
BseRI GAGGAG 1 cut(s) 25
BshFI GGCC 3 cut(s) 32, 72, 404
BsiHKAI GWGCWC 2 cut(s) 216, 307
BsiHKCI CYCGRG 1 cut(s) 486
BsiSI CCGG 2 cut(s) 401, 481
BslI CCNNNNNNNGG 3 cut(s) 46, 86, 329
BsmAI GTCTC 1 cut(s) 88
BsmI GAATGC 1 cut(s) 107
BsnI GGCC 3 cut(s) 32, 72, 404
BsoBI CYCGRG 1 cut(s) 486
Bsp1286I GDGCHC 2 cut(s) 216, 307
Bsp13I TCCGGA 1 cut(s) 480
Bsp143I GATC 2 cut(s) 173, 466
Bsp19I CCATGG 1 cut(s) 287
BspANI GGCC 3 cut(s) 32, 72, 404
BspCNI CTCAG 1 cut(s) 228
BspEI TCCGGA 1 cut(s) 480
BspHI TCATGA 1 cut(s) 256
BspQI GCTCTTC 1 cut(s) 204
BsrDI GCAATG 1 cut(s) 21
BsrFI RCCGGY 1 cut(s) 400
BssAI RCCGGY 1 cut(s) 400
BssECI CCNNGG 2 cut(s) 160, 287
BssMI GATC 2 cut(s) 173, 466
BssT1I CCWWGG 2 cut(s) 160, 287
Bst4CI ACNGT 2 cut(s) 133, 332
Bst6I CTCTTC 1 cut(s) 204
BstAPI GCANNNNNTGC 2 cut(s) 11, 394
BstC8I GCNNGC 2 cut(s) 25, 48
BstDEI CTNAG 1 cut(s) 215
BstDSI CCRYGG 1 cut(s) 287
BstF5I GGATG 2 cut(s) 368, 384
BstH2I RGCGCY 1 cut(s) 47
BstHHI GCGC 2 cut(s) 46, 498
BstKTI GATC 2 cut(s) 176, 469
BstMAI GTCTC 1 cut(s) 88
BstMBI GATC 2 cut(s) 173, 466
BstMWI GCNNNNNNNGC 5 cut(s) 11, 20, 29, 311, 394
BstPAI GACNNNNGTC 1 cut(s) 488
BstSFI CTRYAG 1 cut(s) 309
BstX2I RGATCY 1 cut(s) 173
BstYI RGATCY 1 cut(s) 173
BsuI GTATCC 1 cut(s) 287
BsuRI GGCC 3 cut(s) 32, 72, 404
BtgI CCRYGG 1 cut(s) 287
BtsCI GGATG 2 cut(s) 368, 384
BtsI GCAGTG 1 cut(s) 383
BtsIMutI CAGTG 2 cut(s) 356, 383
Cac8I GCNNGC 2 cut(s) 25, 48
CciI TCATGA 1 cut(s) 256
CfoI GCGC 2 cut(s) 46, 498
Cfr10I RCCGGY 1 cut(s) 400
Cfr13I GGNCC 2 cut(s) 70, 284
Csp6I GTAC 1 cut(s) 441
CviAII CATG 6 cut(s) 112, 180, 257, 288, 457, 532
CviQI GTAC 1 cut(s) 441
DdeI CTNAG 1 cut(s) 215
DpnI GATC 2 cut(s) 175, 468
DpnII GATC 2 cut(s) 173, 466
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
Ecl136II GAGCTC 2 cut(s) 214, 305
Eco130I CCWWGG 2 cut(s) 160, 287
Eco24I GRGCYC 2 cut(s) 216, 307
Eco32I GATATC 1 cut(s) 354
Eco47I GGWCC 1 cut(s) 284
Eco47III AGCGCT 1 cut(s) 45
Eco53kI GAGCTC 2 cut(s) 214, 305
Eco57I CTGAAG 2 cut(s) 380, 391
Eco88I CYCGRG 1 cut(s) 486
EcoICRI GAGCTC 2 cut(s) 214, 305
EcoRV GATATC 1 cut(s) 354
EcoT14I CCWWGG 2 cut(s) 160, 287
EcoT38I GRGCYC 2 cut(s) 216, 307
ErhI CCWWGG 2 cut(s) 160, 287
FaeI CATG 6 cut(s) 115, 183, 260, 291, 460, 535
FatI CATG 6 cut(s) 111, 179, 256, 287, 456, 531
FauNDI CATATG 1 cut(s) 325
FokI GGATG 2 cut(s) 355, 391
FriOI GRGCYC 2 cut(s) 216, 307
FspBI CTAG 3 cut(s) 41, 65, 446
FspI TGCGCA 1 cut(s) 497
GlaI GCGC 2 cut(s) 45, 497
HaeII RGCGCY 1 cut(s) 47
HaeIII GGCC 3 cut(s) 32, 72, 404
HapII CCGG 2 cut(s) 401, 481
HhaI GCGC 2 cut(s) 46, 498
Hin1II CATG 6 cut(s) 115, 183, 260, 291, 460, 535
Hin6I GCGC 2 cut(s) 44, 496
HinP1I GCGC 2 cut(s) 44, 496
HinfI GANTC 3 cut(s) 186, 484, 489
HpaII CCGG 2 cut(s) 401, 481
Hpy166II GTNNAC 1 cut(s) 240
Hpy188I TCNGA 3 cut(s) 173, 218, 410
Hpy188III TCNNGA 3 cut(s) 257, 481, 508
Hpy8I GTNNAC 1 cut(s) 240
HpyAV CCTTC 2 cut(s) 415, 487
HpyCH4III ACNGT 2 cut(s) 133, 332
HpyCH4IV ACGT 1 cut(s) 76
HpyCH4V TGCA 3 cut(s) 14, 179, 388
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 20, 29, 311, 394
HpyF3I CTNAG 1 cut(s) 215
HpySE526I ACGT 1 cut(s) 76
Hsp92II CATG 6 cut(s) 115, 183, 260, 291, 460, 535
HspAI GCGC 2 cut(s) 44, 496
Kpn2I TCCGGA 1 cut(s) 480
Kzo9I GATC 2 cut(s) 173, 466
LguI GCTCTTC 1 cut(s) 204
LmnI GCTCC 1 cut(s) 310
LpnPI CCDG 5 cut(s) 32, 37, 414, 487, 494
LweI GCATC 1 cut(s) 507
MaeI CTAG 3 cut(s) 41, 65, 446
MaeII ACGT 1 cut(s) 76
MaeIII GTNAC 1 cut(s) 149
MalI GATC 2 cut(s) 175, 468
MboI GATC 2 cut(s) 173, 466
MboII GAAGA 4 cut(s) 221, 233, 245, 373
MfeI CAATTG 1 cut(s) 6
MflI RGATCY 1 cut(s) 173
MhlI GDGCHC 2 cut(s) 216, 307
MluCI AATT 1 cut(s) 6
MlyI GAGTC 2 cut(s) 478, 498
MnlI CCTC 4 cut(s) 43, 46, 275, 537
MroI TCCGGA 1 cut(s) 480
MspI CCGG 2 cut(s) 401, 481
MunI CAATTG 1 cut(s) 6
Mva1269I GAATGC 1 cut(s) 107
MwoI GCNNNNNNNGC 5 cut(s) 11, 20, 29, 311, 394
NcoI CCATGG 1 cut(s) 287
NdeI CATATG 1 cut(s) 325
NdeII GATC 2 cut(s) 173, 466
NlaIII CATG 6 cut(s) 115, 183, 260, 291, 460, 535
NmuCI GTSAC 1 cut(s) 149
NsbI TGCGCA 1 cut(s) 497
PaeR7I CTCGAG 1 cut(s) 486
PagI TCATGA 1 cut(s) 256
PciSI GCTCTTC 1 cut(s) 204
PctI GAATGC 1 cut(s) 107
PfeI GAWTC 1 cut(s) 186
PleI GAGTC 2 cut(s) 478, 497
PpsI GAGTC 2 cut(s) 478, 497
PshAI GACNNNNGTC 1 cut(s) 488
Psp124BI GAGCTC 2 cut(s) 216, 307
PspPI GGNCC 2 cut(s) 70, 284
PspXI VCTCGAGB 1 cut(s) 486
PsuI RGATCY 1 cut(s) 173
RsaI GTAC 1 cut(s) 442
RsaNI GTAC 1 cut(s) 441
SacI GAGCTC 2 cut(s) 216, 307
SapI GCTCTTC 1 cut(s) 204
Sau3AI GATC 2 cut(s) 173, 466
Sau96I GGNCC 2 cut(s) 70, 284
SchI GAGTC 2 cut(s) 478, 498
SduI GDGCHC 2 cut(s) 216, 307
SetI ASST 7 cut(s) 29, 79, 126, 216, 307, 316, 479
SfaNI GCATC 1 cut(s) 507
SfcI CTRYAG 1 cut(s) 309
Sfr274I CTCGAG 1 cut(s) 486
SinI GGWCC 1 cut(s) 284
SlaI CTCGAG 1 cut(s) 486
SmlI CTYRAG 1 cut(s) 486
SmoI CTYRAG 1 cut(s) 486
SpeI ACTAGT 1 cut(s) 64
Sse9I AATT 1 cut(s) 6
SspI AATATT 1 cut(s) 143
SspMI CTAG 3 cut(s) 41, 65, 446
SstI GAGCTC 2 cut(s) 216, 307
StyI CCWWGG 2 cut(s) 160, 287
TaaI ACNGT 2 cut(s) 133, 332
TaiI ACGT 1 cut(s) 79
TaqI TCGA 3 cut(s) 473, 487, 507
TasI AATT 1 cut(s) 6
TfiI GAWTC 1 cut(s) 186
TscAI CASTG 2 cut(s) 363, 390
TseFI GTSAC 1 cut(s) 149
Tsp45I GTSAC 1 cut(s) 149
TspDTI ATGAA 6 cut(s) 100, 240, 245, 429, 445, 527
TspRI CASTG 2 cut(s) 363, 390
VpaK11BI GGWCC 1 cut(s) 284
XhoI CTCGAG 1 cut(s) 486
XspI CTAG 3 cut(s) 41, 65, 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.