Rmu_sc0003187.1_g000020

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003187.1
OG0000308
Physical Location & Seq
Forward (+)
75504 .. 76835
1332 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003187.1_g000020.1.cds

Sequence Viewer

Length: 1239 bp
atggcaattgatgcaatggcagcccgcttggcctcctccctagcgttggctgatggcaagaaaccggtggacctgcgtccatccaaaggactgagacaacccaaagctttcatggtgggaaagctgctcacggcgcgagaatactctcgtcgctctttccttggcatgttccgatctgcatggtggatcaatggcagaatgagcgttgaagaaattggagaagatgacagggttctgttcactttcacaaatccctcttatatggatagggtttggaaatgtggttcgtggggctacaatagggccccagtagcactagcgtcgtacgacggtatcagtcctgcaaacgagatgccactaaagaaatcatcctactggatgacgttgcaaggggtaccgccggcgttcagggtcgagatcgactatgcaaagcctctcttgtttcgtcgctgcttttgggtggaagatgaagttcaattcatggtgcagttttggtacgataagttgtttggcaaatgtggaacctgtggcctaattacccacgttggccttccttgttcagggccgtttctggaagaagatagtgatacaccagttagagcggtgacgcagcccaataccttggcaatactacagggacaagaaaaccctaataacaatggggtggtgctaaacaatcaaaccttcatcttcaaggctcagatactgaatagcataccggaagctatacttccccgatccgtggtggccatgcgtcatcaaagacaggtacaaattagagaactgagagagccaagactcaatggagatccaattacaggacaaaggcgaagtagggaaaatgatgaggtaattatttctccaaaaaaaatacacttaagtcttgctattgggaaaaaaaatttggatgcagtgactatgggtttattggagggactttccaacaacaatgagcaaccaaagagaagaagaggatgcccggttggaagtgtgaataagctaccttatggaacagcaggaaaaggaaaaaagaaagacggtgaacttgaaaagacaaagagcaaaacgaccaacctgatgctgaggttgttagctgctgaggagcctaaaactagtactagctctatccctaagggaaagagacagtacttgcttaaggtaaaaaaatttcaagacattatgaacttcaagccttctcaagtgggagtgatttctatatactttctaaaatgtttctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

412

Amino Acids

46.39

Weight (kDa)

9.77

Isoelectric Point (pI)

44.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 81
Acc65I GGTACC 1 cut(s) 394
AccB1I GGYRCC 1 cut(s) 394
AccBSI CCGCTC 1 cut(s) 602
AccII CGCG 1 cut(s) 136
AciI CCGC 3 cut(s) 25, 398, 602
AclWI GGATC 3 cut(s) 194, 732, 803
AcoI YGGCCR 1 cut(s) 747
AcsI RAATTY 2 cut(s) 901, 1166
AfaI GTAC 6 cut(s) 326, 396, 497, 771, 1117, 1148
AfiI CCNNNNNNNGG 5 cut(s) 46, 86, 560, 742, 818
AflII CTTAAG 2 cut(s) 877, 1154
AgeI ACCGGT 1 cut(s) 64
AgsI TTSAA 6 cut(s) 209, 476, 694, 1049, 1172, 1189
AhlI ACTAGT 1 cut(s) 1112
AjuI GAANNNNNNNTTGG 2 cut(s) 887, 919
AloI GAACNNNNNNTCC 2 cut(s) 268, 300
AluBI AGCT 6 cut(s) 107, 124, 725, 1000, 1094, 1122
AluI AGCT 6 cut(s) 107, 124, 725, 1000, 1094, 1122
Alw26I GTCTC 2 cut(s) 88, 1135
AlwI GGATC 3 cut(s) 194, 732, 803
AlwNI CAGNNNCTG 1 cut(s) 706
AoxI GGCC 6 cut(s) 30, 303, 529, 547, 563, 747
ApaI GGGCCC 1 cut(s) 307
ApeKI GCWGC 5 cut(s) 20, 124, 450, 610, 1094
ApoI RAATTY 2 cut(s) 901, 1166
AsiGI ACCGGT 1 cut(s) 64
Asp718I GGTACC 1 cut(s) 394
AspLEI GCGC 1 cut(s) 136
AspS9I GGNCC 4 cut(s) 70, 303, 304, 563
AsuC2I CCSGG 1 cut(s) 980
AsuHPI GGTGA 2 cut(s) 616, 1052
AvaII GGWCC 1 cut(s) 70
AxyI CCTNAGG 1 cut(s) 1131
BaeGI GKGCMC 1 cut(s) 307
BaeI ACNNNNGTAYC 4 cut(s) 316, 349, 579, 612
BalI TGGCCA 1 cut(s) 749
BanI GGYRCC 1 cut(s) 394
BanII GRGCYC 1 cut(s) 307
BbvCI CCTCAGC 2 cut(s) 1082, 1098
BbvI GCAGC 5 cut(s) 32, 111, 437, 622, 1081
BccI CCATC 2 cut(s) 47, 88
BceAI ACGGC 2 cut(s) 147, 550
BcgI CGANNNNNNTGC 2 cut(s) 303, 337
BcnI CCSGG 1 cut(s) 980
BcoDI GTCTC 2 cut(s) 88, 1135
BcuI ACTAGT 1 cut(s) 1112
BfaI CTAG 5 cut(s) 41, 317, 1113, 1119, 1237
BfmI CTRYAG 1 cut(s) 632
BfrI CTTAAG 2 cut(s) 877, 1154
BfuAI ACCTGC 1 cut(s) 81
BglI GCCNNNNNGGC 1 cut(s) 29
BisI GCNGC 5 cut(s) 21, 125, 451, 611, 1095
BlsI GCNGC 5 cut(s) 22, 126, 452, 612, 1096
BmcAI AGTACT 2 cut(s) 1117, 1148
Bme1390I CCNGG 1 cut(s) 980
Bme18I GGWCC 1 cut(s) 70
BmgT120I GGNCC 4 cut(s) 70, 303, 304, 563
BmiI GGNNCC 5 cut(s) 305, 306, 396, 523, 1104
BmrFI CCNGG 1 cut(s) 980
BmrI ACTGGG 1 cut(s) 302
BmsI GCATC 4 cut(s) 342, 898, 965, 1068
BmuI ACTGGG 1 cut(s) 302
BoxI GACNNNNGTC 1 cut(s) 75
Bpu10I CCTNAGC 2 cut(s) 1082, 1098
BpuEI CTTGAG 1 cut(s) 1182
BpuMI CCSGG 1 cut(s) 980
BsaJI CCNNGG 3 cut(s) 160, 621, 741
BsaWI WCCGGW 2 cut(s) 64, 718
Bsc4I CCNNNNNNNGG 5 cut(s) 46, 86, 560, 742, 818
Bse118I RCCGGY 2 cut(s) 64, 400
Bse1I ACTGG 3 cut(s) 308, 380, 593
Bse21I CCTNAGG 1 cut(s) 1131
Bse3DI GCAATG 1 cut(s) 21
BseDI CCNNGG 3 cut(s) 160, 621, 741
BseGI GGATG 5 cut(s) 80, 368, 384, 913, 980
BseLI CCNNNNNNNGG 5 cut(s) 46, 86, 560, 742, 818
BseMI GCAATG 1 cut(s) 21
BseMII CTCAG 5 cut(s) 83, 713, 776, 1073, 1089
BseNI ACTGG 3 cut(s) 308, 380, 593
BseRI GAGGAG 2 cut(s) 25, 1115
BseSI GKGCMC 1 cut(s) 307
BseXI GCAGC 5 cut(s) 32, 111, 437, 622, 1081
BsgI GTGCAG 1 cut(s) 506
Bsh1236I CGCG 1 cut(s) 136
BshFI GGCC 6 cut(s) 32, 305, 531, 549, 565, 749
BshNI GGYRCC 1 cut(s) 394
BshTI ACCGGT 1 cut(s) 64
BsiSI CCGG 4 cut(s) 65, 401, 719, 980
BsiWI CGTACG 1 cut(s) 324
BslFI GGGAC 2 cut(s) 651, 948
BslI CCNNNNNNNGG 5 cut(s) 46, 86, 560, 742, 818
BsmAI GTCTC 2 cut(s) 88, 1135
BsmFI GGGAC 2 cut(s) 651, 948
BsnI GGCC 6 cut(s) 32, 305, 531, 549, 565, 749
Bsp120I GGGCCC 1 cut(s) 303
Bsp1286I GDGCHC 1 cut(s) 307
Bsp143I GATC 5 cut(s) 173, 186, 417, 737, 808
BspACI CCGC 3 cut(s) 25, 398, 602
BspANI GGCC 6 cut(s) 32, 305, 531, 549, 565, 749
BspCNI CTCAG 5 cut(s) 84, 712, 777, 1074, 1090
BspFNI CGCG 1 cut(s) 136
BspLI GGNNCC 5 cut(s) 305, 306, 396, 523, 1104
BspMI ACCTGC 1 cut(s) 81
BspPI GGATC 3 cut(s) 194, 732, 803
BspT107I GGYRCC 1 cut(s) 394
BspTI CTTAAG 2 cut(s) 877, 1154
BsrBI CCGCTC 1 cut(s) 602
BsrDI GCAATG 1 cut(s) 21
BsrFI RCCGGY 2 cut(s) 64, 400
BsrI ACTGG 3 cut(s) 308, 380, 593
BssAI RCCGGY 2 cut(s) 64, 400
BssECI CCNNGG 3 cut(s) 160, 621, 741
BssMI GATC 5 cut(s) 173, 186, 417, 737, 808
BssT1I CCWWGG 2 cut(s) 160, 621
Bst4CI ACNGT 3 cut(s) 332, 1040, 1146
Bst6I CTCTTC 1 cut(s) 964
BstAFI CTTAAG 2 cut(s) 877, 1154
BstAPI GCANNNNNTGC 1 cut(s) 11
BstC8I GCNNGC 2 cut(s) 25, 402
BstDEI CTNAG 6 cut(s) 92, 699, 785, 1082, 1098, 1131
BstDSI CCRYGG 1 cut(s) 741
BstENI CCTNNNNNAGG 1 cut(s) 558
BstF5I GGATG 5 cut(s) 80, 368, 384, 913, 980
BstFNI CGCG 1 cut(s) 136
BstHHI GCGC 1 cut(s) 136
BstKTI GATC 5 cut(s) 176, 189, 420, 740, 811
BstMAI GTCTC 2 cut(s) 88, 1135
BstMBI GATC 5 cut(s) 173, 186, 417, 737, 808
BstMWI GCNNNNNNNGC 6 cut(s) 11, 20, 29, 133, 201, 311
BstNSI RCATGY 1 cut(s) 169
BstPAI GACNNNNGTC 1 cut(s) 75
BstSCI CCNGG 1 cut(s) 978
BstSFI CTRYAG 1 cut(s) 632
BstSLI GKGCMC 1 cut(s) 307
BstUI CGCG 1 cut(s) 136
BstV1I GCAGC 5 cut(s) 32, 111, 437, 622, 1081
BstX2I RGATCY 1 cut(s) 808
BstXI CCANNNNNNTGG 1 cut(s) 622
BstYI RGATCY 1 cut(s) 808
Bsu36I CCTNAGG 1 cut(s) 1131
BsuRI GGCC 6 cut(s) 32, 305, 531, 549, 565, 749
BtgI CCRYGG 1 cut(s) 741
BtsCI GGATG 5 cut(s) 80, 368, 384, 913, 980
BtsI GCAGTG 1 cut(s) 918
BtsIMutI CAGTG 1 cut(s) 918
BveI ACCTGC 1 cut(s) 81
Cac8I GCNNGC 2 cut(s) 25, 402
CaiI CAGNNNCTG 1 cut(s) 706
CfoI GCGC 1 cut(s) 136
Cfr10I RCCGGY 2 cut(s) 64, 400
Cfr13I GGNCC 4 cut(s) 70, 303, 304, 563
CseI GACGC 4 cut(s) 65, 309, 616, 743
Csp6I GTAC 6 cut(s) 325, 395, 496, 770, 1116, 1147
CspAI ACCGGT 1 cut(s) 64
CviAII CATG 5 cut(s) 112, 166, 180, 481, 751
CviQI GTAC 6 cut(s) 325, 395, 496, 770, 1116, 1147
DdeI CTNAG 6 cut(s) 92, 699, 785, 1082, 1098, 1131
DpnI GATC 5 cut(s) 175, 188, 419, 739, 810
DpnII GATC 5 cut(s) 173, 186, 417, 737, 808
EaeI YGGCCR 1 cut(s) 747
Eam1104I CTCTTC 1 cut(s) 964
EarI CTCTTC 1 cut(s) 964
Eco130I CCWWGG 2 cut(s) 160, 621
Eco24I GRGCYC 1 cut(s) 307
Eco47I GGWCC 1 cut(s) 70
Eco81I CCTNAGG 1 cut(s) 1131
EcoNI CCTNNNNNAGG 1 cut(s) 558
EcoO109I RGGNCCY 2 cut(s) 303, 304
EcoT14I CCWWGG 2 cut(s) 160, 621
EcoT38I GRGCYC 1 cut(s) 307
ErhI CCWWGG 2 cut(s) 160, 621
FaeI CATG 5 cut(s) 115, 169, 183, 484, 754
FalI AAGNNNNNCTT 4 cut(s) 422, 454, 714, 746
FaqI GGGAC 2 cut(s) 651, 948
FatI CATG 5 cut(s) 111, 165, 179, 480, 750
FauI CCCGC 1 cut(s) 32
Fnu4HI GCNGC 5 cut(s) 21, 125, 451, 611, 1095
FokI GGATG 5 cut(s) 67, 355, 391, 920, 987
FriOI GRGCYC 1 cut(s) 307
Fsp4HI GCNGC 5 cut(s) 21, 125, 451, 611, 1095
FspBI CTAG 5 cut(s) 41, 317, 1113, 1119, 1237
GlaI GCGC 1 cut(s) 135
GluI GCNGC 5 cut(s) 21, 125, 451, 611, 1095
HaeIII GGCC 6 cut(s) 32, 305, 531, 549, 565, 749
HapII CCGG 4 cut(s) 65, 401, 719, 980
HgaI GACGC 4 cut(s) 65, 309, 616, 743
HhaI GCGC 1 cut(s) 136
Hin1II CATG 5 cut(s) 115, 169, 183, 484, 754
Hin6I GCGC 1 cut(s) 134
HinP1I GCGC 1 cut(s) 134
HindIII AAGCTT 1 cut(s) 105
HinfI GANTC 1 cut(s) 798
HpaII CCGG 4 cut(s) 65, 401, 719, 980
HphI GGTGA 2 cut(s) 616, 1052
Hpy166II GTNNAC 3 cut(s) 70, 240, 1043
Hpy188I TCNGA 2 cut(s) 173, 702
Hpy188III TCNNGA 3 cut(s) 415, 572, 1172
Hpy8I GTNNAC 3 cut(s) 70, 240, 1043
Hpy99I CGWCG 4 cut(s) 153, 325, 332, 450
HpyAV CCTTC 3 cut(s) 560, 694, 1203
HpyCH4III ACNGT 3 cut(s) 332, 1040, 1146
HpyCH4IV ACGT 2 cut(s) 383, 543
HpyCH4V TGCA 7 cut(s) 14, 179, 344, 388, 428, 487, 911
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 20, 29, 133, 201, 311
HpyF3I CTNAG 6 cut(s) 92, 699, 785, 1082, 1098, 1131
HpySE526I ACGT 2 cut(s) 383, 543
Hsp92II CATG 5 cut(s) 115, 169, 183, 484, 754
HspAI GCGC 1 cut(s) 134
KpnI GGTACC 1 cut(s) 398
KroI GCCGGC 1 cut(s) 400
KroNI GCCGGC 1 cut(s) 402
Kzo9I GATC 5 cut(s) 173, 186, 417, 737, 808
LmnI GCTCC 1 cut(s) 1102
Lsp1109I GCAGC 5 cut(s) 32, 111, 437, 622, 1081
LweI GCATC 4 cut(s) 342, 898, 965, 1068
MaeI CTAG 5 cut(s) 41, 317, 1113, 1119, 1237
MaeII ACGT 2 cut(s) 383, 543
MaeIII GTNAC 2 cut(s) 604, 913
MalI GATC 5 cut(s) 175, 188, 419, 739, 810
MbiI CCGCTC 1 cut(s) 602
MboI GATC 5 cut(s) 173, 186, 417, 737, 808
MboII GAAGA 8 cut(s) 221, 233, 476, 587, 590, 682, 978, 981
MfeI CAATTG 1 cut(s) 6
MflI RGATCY 1 cut(s) 808
MhlI GDGCHC 1 cut(s) 307
MlsI TGGCCA 1 cut(s) 749
MluCI AATT 9 cut(s) 6, 213, 476, 534, 774, 813, 852, 901, 1166
MluNI TGGCCA 1 cut(s) 749
MlyI GAGTC 1 cut(s) 792
MmeI TCCRAC 2 cut(s) 964, 966
MnlI CCTC 9 cut(s) 43, 46, 265, 444, 841, 925, 965, 1077, 1093
Mox20I TGGCCA 1 cut(s) 749
MreI CGCCGGCG 1 cut(s) 400
MroNI GCCGGC 1 cut(s) 400
MscI TGGCCA 1 cut(s) 749
MseI TTAA 2 cut(s) 878, 1155
Msp20I TGGCCA 1 cut(s) 749
MspCI CTTAAG 2 cut(s) 877, 1154
MspI CCGG 4 cut(s) 65, 401, 719, 980
MspR9I CCNGG 1 cut(s) 980
MunI CAATTG 1 cut(s) 6
MvnI CGCG 1 cut(s) 136
MwoI GCNNNNNNNGC 6 cut(s) 11, 20, 29, 133, 201, 311
NaeI GCCGGC 1 cut(s) 402
NciI CCSGG 1 cut(s) 980
NdeII GATC 5 cut(s) 173, 186, 417, 737, 808
NgoMIV GCCGGC 1 cut(s) 400
NlaIII CATG 5 cut(s) 115, 169, 183, 484, 754
NlaIV GGNNCC 5 cut(s) 305, 306, 396, 523, 1104
NmuCI GTSAC 2 cut(s) 604, 913
NspI RCATGY 1 cut(s) 169
PdiI GCCGGC 1 cut(s) 402
Pfl23II CGTACG 1 cut(s) 324
PinAI ACCGGT 1 cut(s) 64
PkrI GCNGC 5 cut(s) 22, 126, 452, 612, 1096
PleI GAGTC 1 cut(s) 792
PpsI GAGTC 1 cut(s) 792
PshAI GACNNNNGTC 1 cut(s) 75
PspLI CGTACG 1 cut(s) 324
PspN4I GGNNCC 5 cut(s) 305, 306, 396, 523, 1104
PspOMI GGGCCC 1 cut(s) 303
PspPI GGNCC 4 cut(s) 70, 303, 304, 563
PstNI CAGNNNCTG 1 cut(s) 706
PsuI RGATCY 1 cut(s) 808
RsaI GTAC 6 cut(s) 326, 396, 497, 771, 1117, 1148
RsaNI GTAC 6 cut(s) 325, 395, 496, 770, 1116, 1147
SaqAI TTAA 2 cut(s) 878, 1155
SatI GCNGC 5 cut(s) 21, 125, 451, 611, 1095
Sau3AI GATC 5 cut(s) 173, 186, 417, 737, 808
Sau96I GGNCC 4 cut(s) 70, 303, 304, 563
ScaI AGTACT 2 cut(s) 1117, 1148
SchI GAGTC 1 cut(s) 792
ScrFI CCNGG 1 cut(s) 980
SduI GDGCHC 1 cut(s) 307
SfaNI GCATC 4 cut(s) 342, 898, 965, 1068
SfcI CTRYAG 1 cut(s) 632
SgrAI CRCCGGYG 1 cut(s) 400
SinI GGWCC 1 cut(s) 70
SmlI CTYRAG 3 cut(s) 877, 1154, 1197
SmoI CTYRAG 3 cut(s) 877, 1154, 1197
SpeI ACTAGT 1 cut(s) 1112
Sse9I AATT 9 cut(s) 6, 213, 476, 534, 774, 813, 852, 901, 1166
SsiI CCGC 3 cut(s) 25, 398, 602
SspMI CTAG 5 cut(s) 41, 317, 1113, 1119, 1237
StyD4I CCNGG 1 cut(s) 978
StyI CCWWGG 2 cut(s) 160, 621
TaaI ACNGT 3 cut(s) 332, 1040, 1146
TaiI ACGT 2 cut(s) 386, 546
TaqI TCGA 2 cut(s) 414, 420
TasI AATT 9 cut(s) 6, 213, 476, 534, 774, 813, 852, 901, 1166
TatI WGTACW 2 cut(s) 1115, 1146
Tru1I TTAA 2 cut(s) 878, 1155
Tru9I TTAA 2 cut(s) 878, 1155
TscAI CASTG 1 cut(s) 918
TseFI GTSAC 2 cut(s) 604, 913
TseI GCWGC 5 cut(s) 20, 124, 450, 610, 1094
Tsp45I GTSAC 2 cut(s) 604, 913
TspDTI ATGAA 5 cut(s) 100, 469, 483, 676, 1196
TspGWI ACGGA 1 cut(s) 730
TspRI CASTG 1 cut(s) 918
Vha464I CTTAAG 2 cut(s) 877, 1154
VpaK11BI GGWCC 1 cut(s) 70
XagI CCTNNNNNAGG 1 cut(s) 558
XapI RAATTY 2 cut(s) 901, 1166
XceI RCATGY 1 cut(s) 169
XcmI CCANNNNNNNNNTGG 1 cut(s) 109
XspI CTAG 5 cut(s) 41, 317, 1113, 1119, 1237
ZrmI AGTACT 2 cut(s) 1117, 1148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.