Rmu_sc0000442.1_g000006

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000442.1
OG0000308
Physical Location & Seq
Forward (+)
9951 .. 10301
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000442.1_g000006.1.cds

Sequence Viewer

Length: 351 bp
atggggatgttccgatctgcatggagggtgaatggcacccttaaggttgaggaaactggagaagatgatcgggttcttttctctttttcggatctggctgacagagttagggtttggaaaggaggaccatggggtttcaacaaagctccgattgcactcgcagactatgacggcgtcagacagatctcgggggtgctattgagggggtcatcctactggatgacgttattgggtgttcctcctgattttcagagcaagaagaccaacctgatgccgaggttgttagctgctgaagggactgaagatgatactatctctaaccctaaggggaaggagatggtactttcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_3 zf-CCHC_4

Protein Analysis

116

Amino Acids

12.9

Weight (kDa)

6.25

Isoelectric Point (pI)

27.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 35
AclWI GGATC 1 cut(s) 99
AcuI CTGAAG 2 cut(s) 312, 321
AcyI GRCGYC 1 cut(s) 174
AfaI GTAC 1 cut(s) 342
AflII CTTAAG 1 cut(s) 41
AgsI TTSAA 1 cut(s) 139
AluBI AGCT 2 cut(s) 146, 287
AluI AGCT 2 cut(s) 146, 287
AlwI GGATC 1 cut(s) 99
Ama87I CYCGRG 1 cut(s) 187
ApeKI GCWGC 1 cut(s) 287
AspS9I GGNCC 1 cut(s) 125
AsuHPI GGTGA 1 cut(s) 40
AvaI CYCGRG 1 cut(s) 187
AvaII GGWCC 1 cut(s) 125
AxyI CCTNAGG 1 cut(s) 324
BanI GGYRCC 1 cut(s) 35
BbsI GAAGAC 1 cut(s) 266
BbvI GCAGC 1 cut(s) 274
BccI CCATC 1 cut(s) 331
BceAI ACGGC 1 cut(s) 187
BfrI CTTAAG 1 cut(s) 41
BglII AGATCT 1 cut(s) 183
BisI GCNGC 1 cut(s) 288
BlsI GCNGC 1 cut(s) 289
Bme18I GGWCC 1 cut(s) 125
BmeT110I CYCGRG 1 cut(s) 187
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 1 cut(s) 37
BmsI GCATC 1 cut(s) 261
BpiI GAAGAC 1 cut(s) 266
BpmI CTGGAG 1 cut(s) 78
BsaHI GRCGYC 1 cut(s) 174
BsaJI CCNNGG 2 cut(s) 128, 275
Bse1I ACTGG 2 cut(s) 61, 221
Bse21I CCTNAGG 1 cut(s) 324
BseDI CCNNGG 2 cut(s) 128, 275
BseGI GGATG 3 cut(s) 12, 209, 225
BseNI ACTGG 2 cut(s) 61, 221
BseXI GCAGC 1 cut(s) 274
BshNI GGYRCC 1 cut(s) 35
BsiHKCI CYCGRG 1 cut(s) 187
BslFI GGGAC 1 cut(s) 310
BsmFI GGGAC 1 cut(s) 310
BsoBI CYCGRG 1 cut(s) 187
Bsp143I GATC 4 cut(s) 14, 67, 91, 183
Bsp19I CCATGG 1 cut(s) 128
BspLI GGNNCC 1 cut(s) 37
BspPI GGATC 1 cut(s) 99
BspT107I GGYRCC 1 cut(s) 35
BspTI CTTAAG 1 cut(s) 41
BsrI ACTGG 2 cut(s) 61, 221
BssECI CCNNGG 2 cut(s) 128, 275
BssMI GATC 4 cut(s) 14, 67, 91, 183
BssNI GRCGYC 1 cut(s) 174
BssT1I CCWWGG 1 cut(s) 128
BstACI GRCGYC 1 cut(s) 174
BstAFI CTTAAG 1 cut(s) 41
BstDEI CTNAG 2 cut(s) 324, 348
BstDSI CCRYGG 1 cut(s) 128
BstF5I GGATG 3 cut(s) 12, 209, 225
BstKTI GATC 4 cut(s) 17, 70, 94, 186
BstMBI GATC 4 cut(s) 14, 67, 91, 183
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstV1I GCAGC 1 cut(s) 274
BstV2I GAAGAC 1 cut(s) 266
BstX2I RGATCY 2 cut(s) 91, 183
BstYI RGATCY 2 cut(s) 91, 183
Bsu36I CCTNAGG 1 cut(s) 324
BtgI CCRYGG 1 cut(s) 128
BtsCI GGATG 3 cut(s) 12, 209, 225
Cfr13I GGNCC 1 cut(s) 125
CseI GACGC 1 cut(s) 163
Csp6I GTAC 1 cut(s) 341
CviAII CATG 2 cut(s) 21, 129
CviJI RGCY 3 cut(s) 98, 146, 287
CviKI_1 RGCY 3 cut(s) 98, 146, 287
CviQI GTAC 1 cut(s) 341
DdeI CTNAG 2 cut(s) 324, 348
DpnI GATC 4 cut(s) 16, 69, 93, 185
DpnII GATC 4 cut(s) 14, 67, 91, 183
Eco130I CCWWGG 1 cut(s) 128
Eco47I GGWCC 1 cut(s) 125
Eco57I CTGAAG 2 cut(s) 312, 321
Eco81I CCTNAGG 1 cut(s) 324
Eco88I CYCGRG 1 cut(s) 187
EcoT14I CCWWGG 1 cut(s) 128
ErhI CCWWGG 1 cut(s) 128
FaeI CATG 2 cut(s) 24, 132
FaiI YATR 3 cut(s) 22, 130, 168
FaqI GGGAC 1 cut(s) 310
FatI CATG 2 cut(s) 20, 128
Fnu4HI GCNGC 1 cut(s) 288
FokI GGATG 3 cut(s) 19, 196, 232
Fsp4HI GCNGC 1 cut(s) 288
GluI GCNGC 1 cut(s) 288
GsuI CTGGAG 1 cut(s) 78
HgaI GACGC 1 cut(s) 163
Hin1I GRCGYC 1 cut(s) 174
Hin1II CATG 2 cut(s) 24, 132
HphI GGTGA 1 cut(s) 40
Hpy188I TCNGA 5 cut(s) 14, 91, 150, 179, 252
Hpy188III TCNNGA 1 cut(s) 242
HpyAV CCTTC 2 cut(s) 287, 325
HpyCH4IV ACGT 1 cut(s) 224
HpyCH4V TGCA 2 cut(s) 20, 155
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 2 cut(s) 324, 348
HpySE526I ACGT 1 cut(s) 224
Hsp92I GRCGYC 1 cut(s) 174
Hsp92II CATG 2 cut(s) 24, 132
Kzo9I GATC 4 cut(s) 14, 67, 91, 183
LmnI GCTCC 1 cut(s) 151
LpnPI CCDG 5 cut(s) 42, 80, 202, 255, 281
Lsp1109I GCAGC 1 cut(s) 274
LweI GCATC 1 cut(s) 261
MaeII ACGT 1 cut(s) 224
MalI GATC 4 cut(s) 16, 69, 93, 185
MboI GATC 4 cut(s) 14, 67, 91, 183
MboII GAAGA 3 cut(s) 74, 271, 314
MflI RGATCY 2 cut(s) 91, 183
MnlI CCTC 6 cut(s) 18, 43, 116, 195, 249, 270
MseI TTAA 1 cut(s) 42
MspCI CTTAAG 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 152
NcoI CCATGG 1 cut(s) 128
NdeII GATC 4 cut(s) 14, 67, 91, 183
NlaIII CATG 2 cut(s) 24, 132
NlaIV GGNNCC 1 cut(s) 37
NmeAIII GCCGAG 1 cut(s) 300
PflFI GACNNNGTC 1 cut(s) 173
PkrI GCNGC 1 cut(s) 289
PspN4I GGNNCC 1 cut(s) 37
PspPI GGNCC 1 cut(s) 125
PsuI RGATCY 2 cut(s) 91, 183
PsyI GACNNNGTC 1 cut(s) 173
RsaI GTAC 1 cut(s) 342
RsaNI GTAC 1 cut(s) 341
SaqAI TTAA 1 cut(s) 42
SatI GCNGC 1 cut(s) 288
Sau3AI GATC 4 cut(s) 14, 67, 91, 183
Sau96I GGNCC 1 cut(s) 125
SetI ASST 6 cut(s) 48, 148, 227, 270, 281, 289
SfaNI GCATC 1 cut(s) 261
SinI GGWCC 1 cut(s) 125
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
StyI CCWWGG 1 cut(s) 128
TaiI ACGT 1 cut(s) 227
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TseI GCWGC 1 cut(s) 287
Tth111I GACNNNGTC 1 cut(s) 173
Vha464I CTTAAG 1 cut(s) 41
VpaK11BI GGWCC 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.