Rmu_sc0004966.1_g000001

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004966.1
OG0000308
Physical Location & Seq
Forward (+)
43 .. 417
375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004966.1_g000001.1.cds

Sequence Viewer

Length: 375 bp
atgttccaggttgaagaagtcggagaagatgacagggtcctgttctcattcacggatccaagtaatgtggatagggtttggaaaggtggaccatggggatataacagagctccgatagcccttgcaccatacgacggtgtcagctcgacagcgaaagtaccactgaagaagtcatcatactggataacgctgcaaggagtaccgccgacattcaaattagagcgcatcatgccccttatcggaagcacagtaggcgagttcaaagagatcaatcgtccgacgtttaggaaccaggtcatgcgcattcgagttgatattgactatgtgaaacccttgctattttgtcgtcgtttctgggtggagaacaaagtctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

124

Amino Acids

14.35

Weight (kDa)

9.37

Isoelectric Point (pI)

29.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 302
AciI CCGC 1 cut(s) 203
AclWI GGATC 2 cut(s) 50, 63
AcuI CTGAAG 1 cut(s) 185
AfaI GTAC 2 cut(s) 159, 201
AfiI CCNNNNNNNGG 2 cut(s) 134, 239
AgsI TTSAA 3 cut(s) 14, 214, 262
AjnI CCWGG 2 cut(s) 6, 291
AluBI AGCT 2 cut(s) 110, 144
AluI AGCT 2 cut(s) 110, 144
Alw21I GWGCWC 1 cut(s) 112
AlwI GGATC 2 cut(s) 50, 63
ApeKI GCWGC 1 cut(s) 190
AspLEI GCGC 2 cut(s) 225, 303
AspS9I GGNCC 2 cut(s) 37, 89
AvaII GGWCC 2 cut(s) 37, 89
BamHI GGATCC 1 cut(s) 55
BanII GRGCYC 1 cut(s) 112
BarI GAAGNNNNNNTAC 2 cut(s) 161, 193
Bbv12I GWGCWC 1 cut(s) 112
BbvI GCAGC 1 cut(s) 177
BciT130I CCWGG 2 cut(s) 8, 293
BfaI CTAG 1 cut(s) 373
BisI GCNGC 1 cut(s) 191
BlsI GCNGC 1 cut(s) 192
Bme1390I CCNGG 2 cut(s) 8, 293
Bme18I GGWCC 2 cut(s) 37, 89
BmgT120I GGNCC 2 cut(s) 37, 89
BmiI GGNNCC 3 cut(s) 38, 57, 290
BmrFI CCNGG 2 cut(s) 8, 293
BmsI GCATC 1 cut(s) 234
BsaJI CCNNGG 1 cut(s) 92
Bsc4I CCNNNNNNNGG 2 cut(s) 134, 239
Bse1I ACTGG 1 cut(s) 185
BseBI CCWGG 2 cut(s) 8, 293
BseDI CCNNGG 1 cut(s) 92
BseLI CCNNNNNNNGG 2 cut(s) 134, 239
BseNI ACTGG 1 cut(s) 185
BseXI GCAGC 1 cut(s) 177
BsiHKAI GWGCWC 1 cut(s) 112
BslI CCNNNNNNNGG 2 cut(s) 134, 239
BsmI GAATGC 1 cut(s) 303
Bsp1286I GDGCHC 1 cut(s) 112
Bsp143I GATC 2 cut(s) 55, 267
Bsp19I CCATGG 1 cut(s) 92
BspACI CCGC 1 cut(s) 203
BspLI GGNNCC 3 cut(s) 38, 57, 290
BspPI GGATC 2 cut(s) 50, 63
BsrI ACTGG 1 cut(s) 185
BssECI CCNNGG 1 cut(s) 92
BssMI GATC 2 cut(s) 55, 267
BssT1I CCWWGG 1 cut(s) 92
Bst2UI CCWGG 2 cut(s) 8, 293
Bst4CI ACNGT 2 cut(s) 137, 250
BstDSI CCRYGG 1 cut(s) 92
BstHHI GCGC 2 cut(s) 225, 303
BstKTI GATC 2 cut(s) 58, 270
BstMBI GATC 2 cut(s) 55, 267
BstMWI GCNNNNNNNGC 3 cut(s) 116, 229, 252
BstNI CCWGG 2 cut(s) 8, 293
BstSCI CCNGG 2 cut(s) 6, 291
BstV1I GCAGC 1 cut(s) 177
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
BtgI CCRYGG 1 cut(s) 92
BtsIMutI CAGTG 1 cut(s) 161
CfoI GCGC 2 cut(s) 225, 303
Cfr13I GGNCC 2 cut(s) 37, 89
CsiI ACCWGGT 1 cut(s) 291
Csp6I GTAC 2 cut(s) 158, 200
CspCI CAANNNNNGTGG 2 cut(s) 48, 83
CviAII CATG 3 cut(s) 93, 229, 298
CviJI RGCY 3 cut(s) 110, 119, 144
CviKI_1 RGCY 3 cut(s) 110, 119, 144
CviQI GTAC 2 cut(s) 158, 200
DpnI GATC 2 cut(s) 57, 269
DpnII GATC 2 cut(s) 55, 267
Ecl136II GAGCTC 1 cut(s) 110
Eco130I CCWWGG 1 cut(s) 92
Eco24I GRGCYC 1 cut(s) 112
Eco47I GGWCC 2 cut(s) 37, 89
Eco53kI GAGCTC 1 cut(s) 110
Eco57I CTGAAG 1 cut(s) 185
EcoICRI GAGCTC 1 cut(s) 110
EcoO109I RGGNCCY 1 cut(s) 37
EcoRII CCWGG 2 cut(s) 6, 291
EcoT14I CCWWGG 1 cut(s) 92
EcoT38I GRGCYC 1 cut(s) 112
ErhI CCWWGG 1 cut(s) 92
FaeI CATG 3 cut(s) 96, 232, 301
FaiI YATR 7 cut(s) 94, 102, 130, 178, 230, 299, 324
FatI CATG 3 cut(s) 92, 228, 297
Fnu4HI GCNGC 1 cut(s) 191
FriOI GRGCYC 1 cut(s) 112
Fsp4HI GCNGC 1 cut(s) 191
FspAI RTGCGCAY 1 cut(s) 302
FspBI CTAG 1 cut(s) 373
FspI TGCGCA 1 cut(s) 302
GlaI GCGC 2 cut(s) 224, 302
GluI GCNGC 1 cut(s) 191
HhaI GCGC 2 cut(s) 225, 303
Hin1II CATG 3 cut(s) 96, 232, 301
Hin6I GCGC 2 cut(s) 223, 301
HinP1I GCGC 2 cut(s) 223, 301
Hpy166II GTNNAC 1 cut(s) 89
Hpy188I TCNGA 4 cut(s) 23, 114, 242, 279
Hpy8I GTNNAC 1 cut(s) 89
Hpy99I CGWCG 3 cut(s) 137, 283, 351
HpyCH4III ACNGT 2 cut(s) 137, 250
HpyCH4IV ACGT 1 cut(s) 281
HpyCH4V TGCA 2 cut(s) 125, 193
HpyF10VI GCNNNNNNNGC 3 cut(s) 116, 229, 252
HpySE526I ACGT 1 cut(s) 281
Hsp92II CATG 3 cut(s) 96, 232, 301
HspAI GCGC 2 cut(s) 223, 301
Kzo9I GATC 2 cut(s) 55, 267
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 7 cut(s) 19, 20, 53, 166, 278, 305, 340
Lsp1109I GCAGC 1 cut(s) 177
LweI GCATC 1 cut(s) 234
MabI ACCWGGT 1 cut(s) 291
MaeI CTAG 1 cut(s) 373
MaeII ACGT 1 cut(s) 281
MalI GATC 2 cut(s) 57, 269
MboI GATC 2 cut(s) 55, 267
MboII GAAGA 3 cut(s) 26, 38, 178
MflI RGATCY 1 cut(s) 55
MhlI GDGCHC 1 cut(s) 112
MluCI AATT 1 cut(s) 215
MmeI TCCRAC 1 cut(s) 302
MspR9I CCNGG 2 cut(s) 8, 293
Mva1269I GAATGC 1 cut(s) 303
MvaI CCWGG 2 cut(s) 8, 293
MwoI GCNNNNNNNGC 3 cut(s) 116, 229, 252
NcoI CCATGG 1 cut(s) 92
NdeII GATC 2 cut(s) 55, 267
NlaIII CATG 3 cut(s) 96, 232, 301
NlaIV GGNNCC 3 cut(s) 38, 57, 290
NsbI TGCGCA 1 cut(s) 302
PctI GAATGC 1 cut(s) 303
PflFI GACNNNGTC 2 cut(s) 35, 137
PkrI GCNGC 1 cut(s) 192
PpuMI RGGWCCY 1 cut(s) 37
Psp124BI GAGCTC 1 cut(s) 112
Psp5II RGGWCCY 1 cut(s) 37
Psp6I CCWGG 2 cut(s) 6, 291
PspGI CCWGG 2 cut(s) 6, 291
PspN4I GGNNCC 3 cut(s) 38, 57, 290
PspPI GGNCC 2 cut(s) 37, 89
PspPPI RGGWCCY 1 cut(s) 37
PsuI RGATCY 1 cut(s) 55
PsyI GACNNNGTC 2 cut(s) 35, 137
RsaI GTAC 2 cut(s) 159, 201
RsaNI GTAC 2 cut(s) 158, 200
SacI GAGCTC 1 cut(s) 112
SatI GCNGC 1 cut(s) 191
Sau3AI GATC 2 cut(s) 55, 267
Sau96I GGNCC 2 cut(s) 37, 89
ScrFI CCNGG 2 cut(s) 8, 293
SduI GDGCHC 1 cut(s) 112
SetI ASST 6 cut(s) 12, 88, 112, 146, 284, 297
SexAI ACCWGGT 1 cut(s) 291
SfaNI GCATC 1 cut(s) 234
SinI GGWCC 2 cut(s) 37, 89
Sse9I AATT 1 cut(s) 215
SsiI CCGC 1 cut(s) 203
SspMI CTAG 1 cut(s) 373
SstI GAGCTC 1 cut(s) 112
StyD4I CCNGG 2 cut(s) 6, 291
StyI CCWWGG 1 cut(s) 92
TaaI ACNGT 2 cut(s) 137, 250
TaiI ACGT 1 cut(s) 284
TaqI TCGA 2 cut(s) 146, 307
TasI AATT 1 cut(s) 215
TscAI CASTG 1 cut(s) 168
TseI GCWGC 1 cut(s) 190
TspGWI ACGGA 1 cut(s) 68
TspRI CASTG 1 cut(s) 168
Tth111I GACNNNGTC 2 cut(s) 35, 137
VpaK11BI GGWCC 2 cut(s) 37, 89
XspI CTAG 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.