Rmu_co8463085.1_g000001

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8463085.1
OG0000308
Physical Location & Seq
Reverse (-)
91 .. 459
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8463085.1_g000001.1.cds

Sequence Viewer

Length: 369 bp
atggaggacattgacgctatggcagcccgactggcgtcgtctttggcactggcagaggggaaaagagcagtggatctgaggccatccaagggcaagggtctacgccaaccgaaggtgtatatggttggcatgttactcacggcaagggaatataggaaacgttcttttttggggatgtttcgatctgcatggcatgttggtggagatctgcgggtggagccagcagcaggggaccgagttcttttctcattctcggatccggtggaccgcgctcgtgtgtggcgtggcggtccgtggagtttcaaccgagcccctgtagcactagcggaatatgatgggatcgaaccagtcgaacaagtgttgctgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

122

Amino Acids

13.58

Weight (kDa)

9.76

Isoelectric Point (pI)

50.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 100
AccII CGCG 1 cut(s) 270
AciI CCGC 4 cut(s) 211, 268, 288, 326
AclI AACGTT 1 cut(s) 160
AclWI GGATC 4 cut(s) 81, 251, 264, 347
AcyI GRCGYC 1 cut(s) 35
AfiI CCNNNNNNNGG 3 cut(s) 89, 112, 227
AgsI TTSAA 1 cut(s) 304
AlwI GGATC 4 cut(s) 81, 251, 264, 347
AoxI GGCC 1 cut(s) 80
ApeKI GCWGC 2 cut(s) 23, 224
AspLEI GCGC 1 cut(s) 272
AspS9I GGNCC 3 cut(s) 232, 265, 290
AvaII GGWCC 3 cut(s) 232, 265, 290
BamHI GGATCC 1 cut(s) 256
BanII GRGCYC 1 cut(s) 313
BauI CACGAG 1 cut(s) 273
BbvI GCAGC 2 cut(s) 35, 236
BccI CCATC 2 cut(s) 91, 329
BceAI ACGGC 1 cut(s) 156
BfaI CTAG 1 cut(s) 323
BfmI CTRYAG 1 cut(s) 315
BglI GCCNNNNNGGC 1 cut(s) 32
BglII AGATCT 1 cut(s) 205
BisI GCNGC 2 cut(s) 24, 225
BlsI GCNGC 2 cut(s) 25, 226
Bme18I GGWCC 3 cut(s) 232, 265, 290
BmgT120I GGNCC 3 cut(s) 232, 265, 290
BmiI GGNNCC 3 cut(s) 219, 233, 258
BoxI GACNNNNGTC 1 cut(s) 34
BsaHI GRCGYC 1 cut(s) 35
BsaJI CCNNGG 2 cut(s) 87, 293
BsaWI WCCGGW 1 cut(s) 259
Bsc4I CCNNNNNNNGG 3 cut(s) 89, 112, 227
Bse1I ACTGG 3 cut(s) 36, 54, 347
BseDI CCNNGG 2 cut(s) 87, 293
BseGI GGATG 2 cut(s) 83, 180
BseLI CCNNNNNNNGG 3 cut(s) 89, 112, 227
BseMII CTCAG 1 cut(s) 68
BseNI ACTGG 3 cut(s) 36, 54, 347
BseXI GCAGC 2 cut(s) 35, 236
Bsh1236I CGCG 1 cut(s) 270
BshFI GGCC 1 cut(s) 82
BsiSI CCGG 1 cut(s) 260
BslFI GGGAC 1 cut(s) 245
BslI CCNNNNNNNGG 3 cut(s) 89, 112, 227
BsmFI GGGAC 1 cut(s) 245
BsnI GGCC 1 cut(s) 82
Bsp1286I GDGCHC 1 cut(s) 313
Bsp143I GATC 5 cut(s) 73, 182, 205, 256, 339
BspACI CCGC 4 cut(s) 211, 268, 288, 326
BspANI GGCC 1 cut(s) 82
BspCNI CTCAG 1 cut(s) 69
BspFNI CGCG 1 cut(s) 270
BspLI GGNNCC 3 cut(s) 219, 233, 258
BspPI GGATC 4 cut(s) 81, 251, 264, 347
BsrI ACTGG 3 cut(s) 36, 54, 347
BssECI CCNNGG 2 cut(s) 87, 293
BssMI GATC 5 cut(s) 73, 182, 205, 256, 339
BssNI GRCGYC 1 cut(s) 35
BssSI CACGAG 1 cut(s) 273
BssT1I CCWWGG 1 cut(s) 87
Bst2BI CACGAG 1 cut(s) 273
BstACI GRCGYC 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 222
BstDEI CTNAG 1 cut(s) 77
BstDSI CCRYGG 1 cut(s) 293
BstF5I GGATG 2 cut(s) 83, 180
BstFNI CGCG 1 cut(s) 270
BstHHI GCGC 1 cut(s) 272
BstKTI GATC 5 cut(s) 76, 185, 208, 259, 342
BstMBI GATC 5 cut(s) 73, 182, 205, 256, 339
BstMWI GCNNNNNNNGC 4 cut(s) 23, 32, 217, 317
BstNSI RCATGY 2 cut(s) 133, 197
BstPAI GACNNNNGTC 1 cut(s) 34
BstSFI CTRYAG 1 cut(s) 315
BstUI CGCG 1 cut(s) 270
BstV1I GCAGC 2 cut(s) 35, 236
BstX2I RGATCY 3 cut(s) 73, 205, 256
BstYI RGATCY 3 cut(s) 73, 205, 256
BsuRI GGCC 1 cut(s) 82
BtgI CCRYGG 1 cut(s) 293
BtsCI GGATG 2 cut(s) 83, 180
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 2 cut(s) 47, 75
Cac8I GCNNGC 1 cut(s) 222
CfoI GCGC 1 cut(s) 272
Cfr13I GGNCC 3 cut(s) 232, 265, 290
CpoI CGGWCCG 1 cut(s) 290
CseI GACGC 2 cut(s) 23, 24
CspI CGGWCCG 1 cut(s) 290
CviAII CATG 3 cut(s) 130, 189, 194
CviJI RGCY 4 cut(s) 26, 82, 220, 311
CviKI_1 RGCY 4 cut(s) 26, 82, 220, 311
DdeI CTNAG 1 cut(s) 77
DpnI GATC 5 cut(s) 75, 184, 207, 258, 341
DpnII GATC 5 cut(s) 73, 182, 205, 256, 339
Eco130I CCWWGG 1 cut(s) 87
Eco24I GRGCYC 1 cut(s) 313
Eco47I GGWCC 3 cut(s) 232, 265, 290
EcoT14I CCWWGG 1 cut(s) 87
EcoT38I GRGCYC 1 cut(s) 313
ErhI CCWWGG 1 cut(s) 87
FaeI CATG 3 cut(s) 133, 192, 197
FaiI YATR 8 cut(s) 20, 120, 122, 131, 153, 190, 195, 333
FaqI GGGAC 1 cut(s) 245
FatI CATG 3 cut(s) 129, 188, 193
FauI CCCGC 1 cut(s) 204
FblI GTMKAC 1 cut(s) 100
Fnu4HI GCNGC 2 cut(s) 24, 225
FokI GGATG 2 cut(s) 70, 187
FriOI GRGCYC 1 cut(s) 313
Fsp4HI GCNGC 2 cut(s) 24, 225
FspBI CTAG 1 cut(s) 323
GlaI GCGC 1 cut(s) 271
GluI GCNGC 2 cut(s) 24, 225
HaeIII GGCC 1 cut(s) 82
HapII CCGG 1 cut(s) 260
HgaI GACGC 2 cut(s) 23, 24
HhaI GCGC 1 cut(s) 272
Hin1I GRCGYC 1 cut(s) 35
Hin1II CATG 3 cut(s) 133, 192, 197
Hin6I GCGC 1 cut(s) 270
HinP1I GCGC 1 cut(s) 270
HpaII CCGG 1 cut(s) 260
Hpy166II GTNNAC 2 cut(s) 101, 265
Hpy188I TCNGA 2 cut(s) 78, 256
Hpy8I GTNNAC 2 cut(s) 101, 265
Hpy99I CGWCG 1 cut(s) 40
HpyAV CCTTC 1 cut(s) 106
HpyCH4IV ACGT 1 cut(s) 160
HpyCH4V TGCA 1 cut(s) 188
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 32, 217, 317
HpyF3I CTNAG 1 cut(s) 77
HpySE526I ACGT 1 cut(s) 160
Hsp92I GRCGYC 1 cut(s) 35
Hsp92II CATG 3 cut(s) 133, 192, 197
HspAI GCGC 1 cut(s) 270
Kzo9I GATC 5 cut(s) 73, 182, 205, 256, 339
LmnI GCTCC 1 cut(s) 217
LpnPI CCDG 7 cut(s) 17, 35, 213, 234, 273, 327, 360
Lsp1109I GCAGC 2 cut(s) 35, 236
MaeI CTAG 1 cut(s) 323
MaeII ACGT 1 cut(s) 160
MaeIII GTNAC 1 cut(s) 132
MalI GATC 5 cut(s) 75, 184, 207, 258, 341
MboI GATC 5 cut(s) 73, 182, 205, 256, 339
MflI RGATCY 3 cut(s) 73, 205, 256
MhlI GDGCHC 1 cut(s) 313
MnlI CCTC 2 cut(s) 49, 72
MslI CAYNNNNRTG 1 cut(s) 198
MspI CCGG 1 cut(s) 260
MvnI CGCG 1 cut(s) 270
MwoI GCNNNNNNNGC 4 cut(s) 23, 32, 217, 317
NdeII GATC 5 cut(s) 73, 182, 205, 256, 339
NlaIII CATG 3 cut(s) 133, 192, 197
NlaIV GGNNCC 3 cut(s) 219, 233, 258
NspI RCATGY 2 cut(s) 133, 197
PcsI WCGNNNNNNNCGW 2 cut(s) 280, 348
PkrI GCNGC 2 cut(s) 25, 226
PshAI GACNNNNGTC 1 cut(s) 34
Psp1406I AACGTT 1 cut(s) 160
PspN4I GGNNCC 3 cut(s) 219, 233, 258
PspPI GGNCC 3 cut(s) 232, 265, 290
PsuI RGATCY 3 cut(s) 73, 205, 256
RseI CAYNNNNRTG 1 cut(s) 198
Rsr2I CGGWCCG 1 cut(s) 290
RsrII CGGWCCG 1 cut(s) 290
SatI GCNGC 2 cut(s) 24, 225
Sau3AI GATC 5 cut(s) 73, 182, 205, 256, 339
Sau96I GGNCC 3 cut(s) 232, 265, 290
SduI GDGCHC 1 cut(s) 313
SetI ASST 2 cut(s) 117, 163
SfcI CTRYAG 1 cut(s) 315
SinI GGWCC 3 cut(s) 232, 265, 290
SmiMI CAYNNNNRTG 1 cut(s) 198
SsiI CCGC 4 cut(s) 211, 268, 288, 326
SspMI CTAG 1 cut(s) 323
StyI CCWWGG 1 cut(s) 87
TaiI ACGT 1 cut(s) 163
TaqI TCGA 3 cut(s) 181, 342, 351
TaqII GACCGA 1 cut(s) 249
TscAI CASTG 2 cut(s) 54, 75
TseI GCWGC 2 cut(s) 23, 224
TspGWI ACGGA 1 cut(s) 282
TspRI CASTG 2 cut(s) 54, 75
VpaK11BI GGWCC 3 cut(s) 232, 265, 290
XceI RCATGY 2 cut(s) 133, 197
XmiI GTMKAC 1 cut(s) 100
XspI CTAG 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.