Rmu_sc0039204.1_g000001

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0039204.1
OG0000308
Physical Location & Seq
Forward (+)
1 .. 1066
1066 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0039204.1_g000001.1.cds

Sequence Viewer

Length: 652 bp
ggttgaggaaacaggtgaagatgatcgggttctcttctcctttttggatccggctgatagagctagggtttggaagggaggaccatggggctttaacagggctccaattgcaattgcagactatgatggcgttgggcgaatctcggctgtaccattgaagacgtcgtcttactggatgacgttattgggtgttccccctgcctttcgatctgaaaggattatgcgactcataggtagtaccttgggtgatttcaaagagtatgacagaacggctttccggcaaagggtaatgcgtattagggttgagatcgagtatgctaagcctctattgttcaagcagagattctgggttgaagatgatgttcagttcctcgtaaagttcaagtatgacaaagtttttgggcggtgtgagcgttgtggattcattacccatgtcgacctcctgtgttccggcccggagttggaagaggataaaaaggagagtgcaggtgtggtggcacaaccgtctgcactagcagtattgcgagatgcgccagggacgagttctactgcacctagggttttggatactggtcaaaccctagttttcaatgctaagctacctaacaccatcccagaattctgtcttcctccagcagtggcagcagcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

216

Amino Acids

24.18

Weight (kDa)

6.8

Isoelectric Point (pI)

34.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 477
AatII GACGTC 1 cut(s) 165
Acc36I ACCTGC 1 cut(s) 477
AccI GTMKAC 1 cut(s) 436
AciI CCGC 1 cut(s) 404
AclWI GGATC 2 cut(s) 42, 55
AcsI RAATTY 1 cut(s) 618
AcyI GRCGYC 1 cut(s) 162
AfaI GTAC 2 cut(s) 151, 239
AfiI CCNNNNNNNGG 2 cut(s) 284, 461
AgsI TTSAA 6 cut(s) 158, 254, 335, 354, 383, 590
AjnI CCWGG 1 cut(s) 533
AluBI AGCT 2 cut(s) 63, 599
AluI AGCT 2 cut(s) 63, 599
AlwI GGATC 2 cut(s) 42, 55
AoxI GGCC 1 cut(s) 452
ApeKI GCWGC 2 cut(s) 642, 645
ApoI RAATTY 1 cut(s) 618
ArsI GACNNNNNNTTYG 2 cut(s) 381, 413
AspA2I CCTAGG 1 cut(s) 555
AspLEI GCGC 1 cut(s) 533
AspS9I GGNCC 2 cut(s) 81, 453
AsuC2I CCSGG 1 cut(s) 456
AsuHPI GGTGA 2 cut(s) 27, 258
AvaII GGWCC 1 cut(s) 81
AvrII CCTAGG 1 cut(s) 555
BamHI GGATCC 1 cut(s) 47
BanII GRGCYC 1 cut(s) 104
BbsI GAAGAC 2 cut(s) 165, 618
BccI CCATC 2 cut(s) 120, 618
BceAI ACGGC 1 cut(s) 286
BciT130I CCWGG 1 cut(s) 535
BciVI GTATCC 1 cut(s) 560
BcnI CCSGG 1 cut(s) 456
BfaI CTAG 4 cut(s) 64, 513, 556, 582
BfuAI ACCTGC 1 cut(s) 477
BfuI GTATCC 1 cut(s) 560
BisI GCNGC 2 cut(s) 643, 646
BlnI CCTAGG 1 cut(s) 555
BlpI GCTNAGC 2 cut(s) 319, 595
BlsI GCNGC 2 cut(s) 644, 647
Bme1390I CCNGG 2 cut(s) 456, 535
Bme18I GGWCC 1 cut(s) 81
BmgT120I GGNCC 2 cut(s) 81, 453
BmiI GGNNCC 2 cut(s) 49, 103
BmrFI CCNGG 2 cut(s) 456, 535
BmsI GCATC 1 cut(s) 518
BpiI GAAGAC 2 cut(s) 165, 618
BpmI CTGGAG 1 cut(s) 616
Bpu1102I GCTNAGC 2 cut(s) 319, 595
BpuMI CCSGG 1 cut(s) 456
BsaHI GRCGYC 1 cut(s) 162
BsaJI CCNNGG 4 cut(s) 84, 241, 534, 555
Bsc4I CCNNNNNNNGG 2 cut(s) 284, 461
Bse1I ACTGG 2 cut(s) 177, 575
BseBI CCWGG 1 cut(s) 535
BseDI CCNNGG 4 cut(s) 84, 241, 534, 555
BseGI GGATG 2 cut(s) 181, 610
BseLI CCNNNNNNNGG 2 cut(s) 284, 461
BseNI ACTGG 2 cut(s) 177, 575
BsgI GTGCAG 3 cut(s) 493, 505, 535
BshFI GGCC 1 cut(s) 454
BsiSI CCGG 4 cut(s) 51, 278, 451, 456
BslFI GGGAC 1 cut(s) 551
BslI CCNNNNNNNGG 2 cut(s) 284, 461
BsmFI GGGAC 1 cut(s) 551
BsnI GGCC 1 cut(s) 454
Bsp1286I GDGCHC 1 cut(s) 104
Bsp143I GATC 4 cut(s) 23, 47, 207, 307
Bsp1720I GCTNAGC 2 cut(s) 319, 595
Bsp19I CCATGG 1 cut(s) 84
BspACI CCGC 1 cut(s) 404
BspANI GGCC 1 cut(s) 454
BspLI GGNNCC 2 cut(s) 49, 103
BspMI ACCTGC 1 cut(s) 477
BspPI GGATC 2 cut(s) 42, 55
BsrI ACTGG 2 cut(s) 177, 575
BssECI CCNNGG 4 cut(s) 84, 241, 534, 555
BssMI GATC 4 cut(s) 23, 47, 207, 307
BssNI GRCGYC 1 cut(s) 162
BssT1I CCWWGG 3 cut(s) 84, 241, 555
Bst2UI CCWGG 1 cut(s) 535
Bst4CI ACNGT 1 cut(s) 505
Bst6I CTCTTC 2 cut(s) 39, 460
BstACI GRCGYC 1 cut(s) 162
BstDEI CTNAG 2 cut(s) 319, 595
BstDSI CCRYGG 1 cut(s) 84
BstF5I GGATG 2 cut(s) 181, 610
BstHHI GCGC 1 cut(s) 533
BstKTI GATC 4 cut(s) 26, 50, 210, 310
BstMBI GATC 4 cut(s) 23, 47, 207, 307
BstMWI GCNNNNNNNGC 5 cut(s) 60, 108, 410, 530, 642
BstNI CCWGG 1 cut(s) 535
BstSCI CCNGG 2 cut(s) 454, 533
BstV2I GAAGAC 2 cut(s) 165, 618
BstX2I RGATCY 1 cut(s) 47
BstYI RGATCY 1 cut(s) 47
BsuI GTATCC 1 cut(s) 560
BsuRI GGCC 1 cut(s) 454
BtgI CCRYGG 1 cut(s) 84
BtsCI GGATG 2 cut(s) 181, 610
BtsI GCAGTG 1 cut(s) 643
BtsIMutI CAGTG 1 cut(s) 643
BveI ACCTGC 1 cut(s) 477
CfoI GCGC 1 cut(s) 533
Cfr13I GGNCC 2 cut(s) 81, 453
Csp6I GTAC 2 cut(s) 150, 238
CviAII CATG 2 cut(s) 85, 432
CviJI RGCY 9 cut(s) 54, 63, 91, 102, 147, 273, 323, 454, 599
CviKI_1 RGCY 9 cut(s) 54, 63, 91, 102, 147, 273, 323, 454, 599
CviQI GTAC 2 cut(s) 150, 238
DdeI CTNAG 2 cut(s) 319, 595
DpnI GATC 4 cut(s) 25, 49, 209, 309
DpnII GATC 4 cut(s) 23, 47, 207, 307
Eam1104I CTCTTC 2 cut(s) 39, 460
EarI CTCTTC 2 cut(s) 39, 460
Eco130I CCWWGG 3 cut(s) 84, 241, 555
Eco24I GRGCYC 1 cut(s) 104
Eco47I GGWCC 1 cut(s) 81
EcoRI GAATTC 1 cut(s) 618
EcoRII CCWGG 1 cut(s) 533
EcoT14I CCWWGG 3 cut(s) 84, 241, 555
EcoT38I GRGCYC 1 cut(s) 104
ErhI CCWWGG 3 cut(s) 84, 241, 555
FaeI CATG 2 cut(s) 88, 435
FaiI YATR 9 cut(s) 86, 124, 222, 231, 262, 316, 388, 433, 650
FaqI GGGAC 1 cut(s) 551
FatI CATG 2 cut(s) 84, 431
FblI GTMKAC 1 cut(s) 436
Fnu4HI GCNGC 2 cut(s) 643, 646
FokI GGATG 2 cut(s) 188, 597
FriOI GRGCYC 1 cut(s) 104
Fsp4HI GCNGC 2 cut(s) 643, 646
FspBI CTAG 4 cut(s) 64, 513, 556, 582
GlaI GCGC 1 cut(s) 532
GluI GCNGC 2 cut(s) 643, 646
GsuI CTGGAG 1 cut(s) 616
HaeIII GGCC 1 cut(s) 454
HapII CCGG 4 cut(s) 51, 278, 451, 456
HhaI GCGC 1 cut(s) 533
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 2 cut(s) 88, 435
Hin6I GCGC 1 cut(s) 531
HinP1I GCGC 1 cut(s) 531
HincII GTYRAC 1 cut(s) 437
HindII GTYRAC 1 cut(s) 437
HinfI GANTC 4 cut(s) 139, 226, 343, 421
HpaII CCGG 4 cut(s) 51, 278, 451, 456
HphI GGTGA 2 cut(s) 27, 258
Hpy166II GTNNAC 1 cut(s) 437
Hpy188I TCNGA 1 cut(s) 212
Hpy8I GTNNAC 1 cut(s) 437
Hpy99I CGWCG 1 cut(s) 167
HpyAV CCTTC 1 cut(s) 68
HpyCH4III ACNGT 1 cut(s) 505
HpyCH4IV ACGT 2 cut(s) 162, 180
HpyCH4V TGCA 5 cut(s) 111, 117, 486, 510, 552
HpyF10VI GCNNNNNNNGC 5 cut(s) 60, 108, 410, 530, 642
HpyF3I CTNAG 2 cut(s) 319, 595
HpySE526I ACGT 2 cut(s) 162, 180
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 2 cut(s) 88, 435
HspAI GCGC 1 cut(s) 531
Kzo9I GATC 4 cut(s) 23, 47, 207, 307
LmnI GCTCC 1 cut(s) 107
LweI GCATC 1 cut(s) 518
MaeI CTAG 4 cut(s) 64, 513, 556, 582
MaeII ACGT 2 cut(s) 162, 180
MalI GATC 4 cut(s) 25, 49, 209, 309
MboI GATC 4 cut(s) 23, 47, 207, 307
MboII GAAGA 6 cut(s) 26, 30, 170, 366, 477, 618
MfeI CAATTG 2 cut(s) 106, 112
MflI RGATCY 1 cut(s) 47
MhlI GDGCHC 1 cut(s) 104
MluCI AATT 3 cut(s) 106, 112, 618
MlyI GAGTC 1 cut(s) 220
MmeI TCCRAC 1 cut(s) 442
MnlI CCTC 6 cut(s) 72, 334, 381, 450, 461, 640
MseI TTAA 1 cut(s) 94
MspI CCGG 4 cut(s) 51, 278, 451, 456
MspR9I CCNGG 2 cut(s) 456, 535
MunI CAATTG 2 cut(s) 106, 112
MvaI CCWGG 1 cut(s) 535
MwoI GCNNNNNNNGC 5 cut(s) 60, 108, 410, 530, 642
NciI CCSGG 1 cut(s) 456
NcoI CCATGG 1 cut(s) 84
NdeII GATC 4 cut(s) 23, 47, 207, 307
NlaIII CATG 2 cut(s) 88, 435
NlaIV GGNNCC 2 cut(s) 49, 103
NmeAIII GCCGAG 1 cut(s) 123
PaqCI CACCTGC 1 cut(s) 477
PfeI GAWTC 3 cut(s) 139, 343, 421
PflFI GACNNNGTC 1 cut(s) 164
PkrI GCNGC 2 cut(s) 644, 647
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
Psp6I CCWGG 1 cut(s) 533
PspGI CCWGG 1 cut(s) 533
PspN4I GGNNCC 2 cut(s) 49, 103
PspPI GGNCC 2 cut(s) 81, 453
PsuI RGATCY 1 cut(s) 47
PsyI GACNNNGTC 1 cut(s) 164
RsaI GTAC 2 cut(s) 151, 239
RsaNI GTAC 2 cut(s) 150, 238
SalI GTCGAC 1 cut(s) 435
SaqAI TTAA 1 cut(s) 94
SatI GCNGC 2 cut(s) 643, 646
Sau3AI GATC 4 cut(s) 23, 47, 207, 307
Sau96I GGNCC 2 cut(s) 81, 453
SchI GAGTC 1 cut(s) 220
ScrFI CCNGG 2 cut(s) 456, 535
SduI GDGCHC 1 cut(s) 104
SfaNI GCATC 1 cut(s) 518
SinI GGWCC 1 cut(s) 81
Sse9I AATT 3 cut(s) 106, 112, 618
SsiI CCGC 1 cut(s) 404
SspMI CTAG 4 cut(s) 64, 513, 556, 582
StyD4I CCNGG 2 cut(s) 454, 533
StyI CCWWGG 3 cut(s) 84, 241, 555
TaaI ACNGT 1 cut(s) 505
TaiI ACGT 2 cut(s) 165, 183
TaqI TCGA 3 cut(s) 206, 310, 436
TasI AATT 3 cut(s) 106, 112, 618
TfiI GAWTC 3 cut(s) 139, 343, 421
Tru1I TTAA 1 cut(s) 94
Tru9I TTAA 1 cut(s) 94
TscAI CASTG 1 cut(s) 643
TseI GCWGC 2 cut(s) 642, 645
TspDTI ATGAA 1 cut(s) 413
TspRI CASTG 1 cut(s) 643
Tth111I GACNNNGTC 1 cut(s) 164
VpaK11BI GGWCC 1 cut(s) 81
XapI RAATTY 1 cut(s) 618
XmaJI CCTAGG 1 cut(s) 555
XmiI GTMKAC 1 cut(s) 436
XspI CTAG 4 cut(s) 64, 513, 556, 582
ZraI GACGTC 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.