Rmu_sc0000146.1_g000025

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000146.1
OG0000308
Physical Location & Seq
Reverse (-)
73367 .. 74323
957 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000146.1_g000025.1.cds

Sequence Viewer

Length: 855 bp
atggcaattgatgcaatggcagcccgcttggcctcctccctagccttggctgatggcaagaaactggtggaccagcgtccatccaaaggactgagacaacccgaagctttcatggtgggaaagctgctcacggcgcgggaatactcccatccctctgatgtggatagggtttggaaaggtggatcatggggttataacagggctcctatagcactagcgccgtacgacggtatcagtccggcaagcgagataccactgaagaaatcatcctactggatgacgctgcaaggagtaccgccggcatttaggtctgagcgtattatgcgcctgatcgatagtacgctgggagatttcaaggagtttgatcgttcggctttccggaccctagtcatgcgcatcagggtcgagatcgactatgccaagcctctcttgtttcgtcgccgcttctgggtggaagatgaagttcaatttatggtgcagtttcggtacgataagttgtttggcagatgcgatacctgtggcctagttacccacgttggccttccttgttcagggccggatctggaagaagatagtgatacaccagttggagcggtagcacagcccacggccttggcaatactatggggacaagaaaaccctaataacaatagggtggtggtaaacaatcaaaccttgatcttcaaggctcagataccaaatatcataccggaagctttacttctccaatccgtggtggccatgcgtcgtcaaagacaggtgcaaatttgtcactcccctaacccgatgtcggtggattttaagcacctgaccccgaatctgaggtgtgagtgttacaaagcagaatgtaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

284

Amino Acids

32.07

Weight (kDa)

8.95

Isoelectric Point (pI)

47.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 195
Acc16I TGCGCA 1 cut(s) 395
AccB7I CCANNNNNTGG 1 cut(s) 733
AccBSI CCGCTC 1 cut(s) 593
AccII CGCG 1 cut(s) 136
AccIII TCCGGA 1 cut(s) 378
AciI CCGC 5 cut(s) 25, 136, 296, 442, 593
AclWI GGATC 2 cut(s) 190, 567
AcoI YGGCCR 1 cut(s) 738
AcsI RAATTY 1 cut(s) 765
AcuI CTGAAG 1 cut(s) 278
AfaI GTAC 4 cut(s) 224, 294, 340, 488
AfiI CCNNNNNNNGG 7 cut(s) 46, 86, 227, 448, 551, 733, 790
AgsI TTSAA 3 cut(s) 355, 467, 685
AluBI AGCT 3 cut(s) 107, 124, 716
AluI AGCT 3 cut(s) 107, 124, 716
Alw26I GTCTC 1 cut(s) 88
AlwI GGATC 2 cut(s) 190, 567
Aor13HI TCCGGA 1 cut(s) 378
AoxI GGCC 6 cut(s) 30, 520, 538, 554, 609, 738
ApeKI GCWGC 3 cut(s) 20, 124, 283
ApoI RAATTY 1 cut(s) 765
AspLEI GCGC 4 cut(s) 136, 220, 327, 396
AspS9I GGNCC 3 cut(s) 70, 381, 554
AvaII GGWCC 2 cut(s) 70, 381
BaeI ACNNNNGTAYC 4 cut(s) 214, 247, 570, 603
BalI TGGCCA 1 cut(s) 740
BanII GRGCYC 1 cut(s) 205
BbvI GCAGC 3 cut(s) 32, 111, 270
BccI CCATC 3 cut(s) 47, 88, 156
BceAI ACGGC 3 cut(s) 147, 205, 624
BcgI CGANNNNNNTGC 2 cut(s) 385, 419
BcoDI GTCTC 1 cut(s) 88
BfaI CTAG 4 cut(s) 41, 215, 386, 524
BfmI CTRYAG 1 cut(s) 207
BfoI RGCGCY 1 cut(s) 221
BglI GCCNNNNNGGC 1 cut(s) 29
BisI GCNGC 4 cut(s) 21, 125, 284, 442
BlsI GCNGC 4 cut(s) 22, 126, 285, 443
Bme18I GGWCC 2 cut(s) 70, 381
BmgT120I GGNCC 3 cut(s) 70, 381, 554
BmiI GGNNCC 2 cut(s) 204, 383
BmsI GCATC 2 cut(s) 405, 497
BoxI GACNNNNGTC 2 cut(s) 75, 386
Bsa29I ATCGAT 1 cut(s) 333
BsaJI CCNNGG 4 cut(s) 45, 606, 612, 732
BsaWI WCCGGW 2 cut(s) 378, 709
Bsc4I CCNNNNNNNGG 7 cut(s) 46, 86, 227, 448, 551, 733, 790
Bse118I RCCGGY 1 cut(s) 298
Bse1I ACTGG 3 cut(s) 69, 278, 584
Bse3DI GCAATG 1 cut(s) 21
BseAI TCCGGA 1 cut(s) 378
BseCI ATCGAT 1 cut(s) 333
BseDI CCNNGG 4 cut(s) 45, 606, 612, 732
BseGI GGATG 4 cut(s) 80, 148, 266, 282
BseLI CCNNNNNNNGG 7 cut(s) 46, 86, 227, 448, 551, 733, 790
BseMI GCAATG 1 cut(s) 21
BseMII CTCAG 4 cut(s) 83, 303, 704, 812
BseNI ACTGG 3 cut(s) 69, 278, 584
BseRI GAGGAG 1 cut(s) 25
BseXI GCAGC 3 cut(s) 32, 111, 270
BseYI CCCAGC 1 cut(s) 343
BsgI GTGCAG 1 cut(s) 497
Bsh1236I CGCG 1 cut(s) 136
BshFI GGCC 6 cut(s) 32, 522, 540, 556, 611, 740
BshVI ATCGAT 1 cut(s) 333
BsiSI CCGG 5 cut(s) 239, 299, 379, 557, 710
BsiWI CGTACG 1 cut(s) 222
BslFI GGGAC 1 cut(s) 642
BslI CCNNNNNNNGG 7 cut(s) 46, 86, 227, 448, 551, 733, 790
BsmAI GTCTC 1 cut(s) 88
BsmFI GGGAC 1 cut(s) 642
BsnI GGCC 6 cut(s) 32, 522, 540, 556, 611, 740
Bsp1286I GDGCHC 1 cut(s) 205
Bsp13I TCCGGA 1 cut(s) 378
Bsp143I GATC 6 cut(s) 182, 330, 364, 408, 559, 678
BspACI CCGC 5 cut(s) 25, 136, 296, 442, 593
BspANI GGCC 6 cut(s) 32, 522, 540, 556, 611, 740
BspCNI CTCAG 4 cut(s) 84, 304, 703, 813
BspDI ATCGAT 1 cut(s) 333
BspEI TCCGGA 1 cut(s) 378
BspFNI CGCG 1 cut(s) 136
BspLI GGNNCC 2 cut(s) 204, 383
BspPI GGATC 2 cut(s) 190, 567
BsrBI CCGCTC 1 cut(s) 593
BsrDI GCAATG 1 cut(s) 21
BsrFI RCCGGY 1 cut(s) 298
BsrI ACTGG 3 cut(s) 69, 278, 584
BssAI RCCGGY 1 cut(s) 298
BssECI CCNNGG 4 cut(s) 45, 606, 612, 732
BssMI GATC 6 cut(s) 182, 330, 364, 408, 559, 678
BssT1I CCWWGG 2 cut(s) 45, 612
Bst4CI ACNGT 1 cut(s) 230
BstAPI GCANNNNNTGC 1 cut(s) 11
BstC8I GCNNGC 3 cut(s) 25, 244, 300
BstDEI CTNAG 4 cut(s) 92, 312, 690, 821
BstDSI CCRYGG 2 cut(s) 606, 732
BstENI CCTNNNNNAGG 1 cut(s) 549
BstF5I GGATG 4 cut(s) 80, 148, 266, 282
BstFNI CGCG 1 cut(s) 136
BstH2I RGCGCY 1 cut(s) 221
BstHHI GCGC 4 cut(s) 136, 220, 327, 396
BstKTI GATC 6 cut(s) 185, 333, 367, 411, 562, 681
BstMAI GTCTC 1 cut(s) 88
BstMBI GATC 6 cut(s) 182, 330, 364, 408, 559, 678
BstMWI GCNNNNNNNGC 6 cut(s) 11, 20, 29, 133, 209, 322
BstPAI GACNNNNGTC 2 cut(s) 75, 386
BstSFI CTRYAG 1 cut(s) 207
BstUI CGCG 1 cut(s) 136
BstV1I GCAGC 3 cut(s) 32, 111, 270
BstX2I RGATCY 1 cut(s) 559
BstXI CCANNNNNNTGG 1 cut(s) 613
BstYI RGATCY 1 cut(s) 559
Bsu15I ATCGAT 1 cut(s) 333
BsuRI GGCC 6 cut(s) 32, 522, 540, 556, 611, 740
BsuTUI ATCGAT 1 cut(s) 333
BtgI CCRYGG 2 cut(s) 606, 732
BtsCI GGATG 4 cut(s) 80, 148, 266, 282
BtsIMutI CAGTG 1 cut(s) 254
Cac8I GCNNGC 3 cut(s) 25, 244, 300
CfoI GCGC 4 cut(s) 136, 220, 327, 396
Cfr10I RCCGGY 1 cut(s) 298
Cfr13I GGNCC 3 cut(s) 70, 381, 554
ClaI ATCGAT 1 cut(s) 333
CseI GACGC 3 cut(s) 65, 289, 734
Csp6I GTAC 4 cut(s) 223, 293, 339, 487
CviAII CATG 4 cut(s) 112, 186, 391, 742
CviQI GTAC 4 cut(s) 223, 293, 339, 487
DdeI CTNAG 4 cut(s) 92, 312, 690, 821
DpnI GATC 6 cut(s) 184, 332, 366, 410, 561, 680
DpnII GATC 6 cut(s) 182, 330, 364, 408, 559, 678
EaeI YGGCCR 1 cut(s) 738
Eco130I CCWWGG 2 cut(s) 45, 612
Eco24I GRGCYC 1 cut(s) 205
Eco47I GGWCC 2 cut(s) 70, 381
Eco57I CTGAAG 1 cut(s) 278
EcoNI CCTNNNNNAGG 1 cut(s) 549
EcoT14I CCWWGG 2 cut(s) 45, 612
EcoT38I GRGCYC 1 cut(s) 205
ErhI CCWWGG 2 cut(s) 45, 612
FaeI CATG 4 cut(s) 115, 189, 394, 745
FalI AAGNNNNNCTT 4 cut(s) 413, 445, 705, 737
FaqI GGGAC 1 cut(s) 642
FatI CATG 4 cut(s) 111, 185, 390, 741
FauI CCCGC 2 cut(s) 32, 129
Fnu4HI GCNGC 4 cut(s) 21, 125, 284, 442
FokI GGATG 4 cut(s) 67, 135, 253, 289
FriOI GRGCYC 1 cut(s) 205
Fsp4HI GCNGC 4 cut(s) 21, 125, 284, 442
FspAI RTGCGCAY 1 cut(s) 395
FspBI CTAG 4 cut(s) 41, 215, 386, 524
FspI TGCGCA 1 cut(s) 395
GlaI GCGC 4 cut(s) 135, 219, 326, 395
GluI GCNGC 4 cut(s) 21, 125, 284, 442
GsaI CCCAGC 1 cut(s) 347
HaeII RGCGCY 1 cut(s) 221
HaeIII GGCC 6 cut(s) 32, 522, 540, 556, 611, 740
HapII CCGG 5 cut(s) 239, 299, 379, 557, 710
HgaI GACGC 3 cut(s) 65, 289, 734
HhaI GCGC 4 cut(s) 136, 220, 327, 396
Hin1II CATG 4 cut(s) 115, 189, 394, 745
Hin6I GCGC 4 cut(s) 134, 218, 325, 394
HinP1I GCGC 4 cut(s) 134, 218, 325, 394
HindIII AAGCTT 2 cut(s) 105, 714
HinfI GANTC 1 cut(s) 817
HpaII CCGG 5 cut(s) 239, 299, 379, 557, 710
Hpy166II GTNNAC 2 cut(s) 70, 664
Hpy188I TCNGA 4 cut(s) 157, 313, 693, 822
Hpy188III TCNNGA 3 cut(s) 379, 406, 563
Hpy8I GTNNAC 2 cut(s) 70, 664
Hpy99I CGWCG 3 cut(s) 230, 441, 750
HpyAV CCTTC 1 cut(s) 551
HpyCH4III ACNGT 1 cut(s) 230
HpyCH4IV ACGT 1 cut(s) 534
HpyCH4V TGCA 4 cut(s) 14, 286, 478, 763
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 20, 29, 133, 209, 322
HpyF3I CTNAG 4 cut(s) 92, 312, 690, 821
HpySE526I ACGT 1 cut(s) 534
Hsp92II CATG 4 cut(s) 115, 189, 394, 745
HspAI GCGC 4 cut(s) 134, 218, 325, 394
Kpn2I TCCGGA 1 cut(s) 378
KroI GCCGGC 1 cut(s) 298
KroNI GCCGGC 1 cut(s) 300
Kzo9I GATC 6 cut(s) 182, 330, 364, 408, 559, 678
LmnI GCTCC 2 cut(s) 208, 590
Lsp1109I GCAGC 3 cut(s) 32, 111, 270
LweI GCATC 2 cut(s) 405, 497
MaeI CTAG 4 cut(s) 41, 215, 386, 524
MaeII ACGT 1 cut(s) 534
MaeIII GTNAC 3 cut(s) 526, 770, 833
MalI GATC 6 cut(s) 184, 332, 366, 410, 561, 680
MbiI CCGCTC 1 cut(s) 593
MboI GATC 6 cut(s) 182, 330, 364, 408, 559, 678
MboII GAAGA 5 cut(s) 271, 467, 578, 581, 673
MfeI CAATTG 1 cut(s) 6
MflI RGATCY 1 cut(s) 559
MhlI GDGCHC 1 cut(s) 205
MlsI TGGCCA 1 cut(s) 740
MluCI AATT 3 cut(s) 6, 467, 765
MluNI TGGCCA 1 cut(s) 740
MmeI TCCRAC 1 cut(s) 568
MnlI CCTC 5 cut(s) 43, 46, 163, 435, 816
Mox20I TGGCCA 1 cut(s) 740
MroI TCCGGA 1 cut(s) 378
MroNI GCCGGC 1 cut(s) 298
MscI TGGCCA 1 cut(s) 740
MseI TTAA 1 cut(s) 801
Msp20I TGGCCA 1 cut(s) 740
MspI CCGG 5 cut(s) 239, 299, 379, 557, 710
MunI CAATTG 1 cut(s) 6
MvnI CGCG 1 cut(s) 136
MwoI GCNNNNNNNGC 6 cut(s) 11, 20, 29, 133, 209, 322
NaeI GCCGGC 1 cut(s) 300
NdeII GATC 6 cut(s) 182, 330, 364, 408, 559, 678
NgoMIV GCCGGC 1 cut(s) 298
NlaIII CATG 4 cut(s) 115, 189, 394, 745
NlaIV GGNNCC 2 cut(s) 204, 383
NmuCI GTSAC 1 cut(s) 770
NsbI TGCGCA 1 cut(s) 395
PdiI GCCGGC 1 cut(s) 300
PfeI GAWTC 1 cut(s) 817
Pfl23II CGTACG 1 cut(s) 222
PflMI CCANNNNNTGG 1 cut(s) 733
PkrI GCNGC 4 cut(s) 22, 126, 285, 443
PshAI GACNNNNGTC 2 cut(s) 75, 386
PsiI TTATAA 1 cut(s) 195
PspFI CCCAGC 1 cut(s) 343
PspLI CGTACG 1 cut(s) 222
PspN4I GGNNCC 2 cut(s) 204, 383
PspPI GGNCC 3 cut(s) 70, 381, 554
PsuI RGATCY 1 cut(s) 559
RsaI GTAC 4 cut(s) 224, 294, 340, 488
RsaNI GTAC 4 cut(s) 223, 293, 339, 487
SaqAI TTAA 1 cut(s) 801
SatI GCNGC 4 cut(s) 21, 125, 284, 442
Sau3AI GATC 6 cut(s) 182, 330, 364, 408, 559, 678
Sau96I GGNCC 3 cut(s) 70, 381, 554
SduI GDGCHC 1 cut(s) 205
SfaNI GCATC 2 cut(s) 405, 497
SfcI CTRYAG 1 cut(s) 207
SinI GGWCC 2 cut(s) 70, 381
Sse9I AATT 3 cut(s) 6, 467, 765
SsiI CCGC 5 cut(s) 25, 136, 296, 442, 593
SspMI CTAG 4 cut(s) 41, 215, 386, 524
StyI CCWWGG 2 cut(s) 45, 612
TaaI ACNGT 1 cut(s) 230
TaiI ACGT 1 cut(s) 537
TaqI TCGA 3 cut(s) 333, 405, 411
TasI AATT 3 cut(s) 6, 467, 765
TauI GCSGC 1 cut(s) 444
TfiI GAWTC 1 cut(s) 817
Tru1I TTAA 1 cut(s) 801
Tru9I TTAA 1 cut(s) 801
TscAI CASTG 1 cut(s) 261
TseFI GTSAC 1 cut(s) 770
TseI GCWGC 3 cut(s) 20, 124, 283
Tsp45I GTSAC 1 cut(s) 770
TspDTI ATGAA 2 cut(s) 100, 474
TspGWI ACGGA 1 cut(s) 721
TspRI CASTG 1 cut(s) 261
Van91I CCANNNNNTGG 1 cut(s) 733
VpaK11BI GGWCC 2 cut(s) 70, 381
XagI CCTNNNNNAGG 1 cut(s) 549
XapI RAATTY 1 cut(s) 765
XspI CTAG 4 cut(s) 41, 215, 386, 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.