Rmu_co8136936.1_g000001

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8136936.1
OG0000308
Physical Location & Seq
Reverse (-)
129 .. 470
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8136936.1_g000001.1.cds

Sequence Viewer

Length: 342 bp
atgcgactgattgggagtaccataggcgagttcatggaagttgatcgccccgcctttcggacgcgagttttgagcattagggtcgagatagattatgtaaaacctctcatgtttcgtcgacgtttcagggtggaagatgaagtccagttcatggtgcagtttcgatatgaaaaattgtttggcaggtgtggcacctgcggcctagttaaccatgttggcctcccttgttcagggccggatctggaagaagaccgtgacatacctattggcacggtggagcaacccacggctttagccgtattacggggactggaaaacctaatgtcaatagggaaacggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

113

Amino Acids

12.99

Weight (kDa)

7.73

Isoelectric Point (pI)

31.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 174, 203
Acc36I ACCTGC 2 cut(s) 174, 203
AccB1I GGYRCC 1 cut(s) 191
AccB7I CCANNNNNTGG 1 cut(s) 151
AccI GTMKAC 1 cut(s) 118
AccII CGCG 1 cut(s) 64
AciI CCGC 2 cut(s) 51, 198
AclWI GGATC 1 cut(s) 246
AfaI GTAC 1 cut(s) 19
AfiI CCNNNNNNNGG 4 cut(s) 57, 151, 230, 303
AjuI GAANNNNNNNTTGG 2 cut(s) 162, 194
AlwI GGATC 1 cut(s) 246
AoxI GGCC 3 cut(s) 199, 217, 233
ArsI GACNNNNNNTTYG 2 cut(s) 52, 84
AspS9I GGNCC 1 cut(s) 233
BanI GGYRCC 1 cut(s) 191
BbsI GAAGAC 1 cut(s) 255
BceAI ACGGC 2 cut(s) 281, 303
BcgI CGANNNNNNTGC 2 cut(s) 64, 98
BfaI CTAG 1 cut(s) 203
BfuAI ACCTGC 2 cut(s) 174, 203
BisI GCNGC 1 cut(s) 199
BlsI GCNGC 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 233
BmiI GGNNCC 1 cut(s) 193
BpiI GAAGAC 1 cut(s) 255
BsaJI CCNNGG 1 cut(s) 285
Bsc4I CCNNNNNNNGG 4 cut(s) 57, 151, 230, 303
Bse1I ACTGG 2 cut(s) 145, 315
BseDI CCNNGG 1 cut(s) 285
BseLI CCNNNNNNNGG 4 cut(s) 57, 151, 230, 303
BseNI ACTGG 2 cut(s) 145, 315
BsgI GTGCAG 1 cut(s) 176
Bsh1236I CGCG 1 cut(s) 64
BshFI GGCC 3 cut(s) 201, 219, 235
BshNI GGYRCC 1 cut(s) 191
BsiSI CCGG 1 cut(s) 236
BslFI GGGAC 1 cut(s) 321
BslI CCNNNNNNNGG 4 cut(s) 57, 151, 230, 303
BsmFI GGGAC 1 cut(s) 321
BsnI GGCC 3 cut(s) 201, 219, 235
Bsp143I GATC 2 cut(s) 43, 238
BspACI CCGC 2 cut(s) 51, 198
BspANI GGCC 3 cut(s) 201, 219, 235
BspFNI CGCG 1 cut(s) 64
BspLI GGNNCC 1 cut(s) 193
BspMI ACCTGC 2 cut(s) 174, 203
BspPI GGATC 1 cut(s) 246
BspT107I GGYRCC 1 cut(s) 191
BsrI ACTGG 2 cut(s) 145, 315
BssECI CCNNGG 1 cut(s) 285
BssMI GATC 2 cut(s) 43, 238
Bst4CI ACNGT 3 cut(s) 254, 274, 339
BstDSI CCRYGG 1 cut(s) 285
BstENI CCTNNNNNAGG 1 cut(s) 228
BstFNI CGCG 1 cut(s) 64
BstKTI GATC 2 cut(s) 46, 241
BstMBI GATC 2 cut(s) 43, 238
BstMWI GCNNNNNNNGC 2 cut(s) 189, 198
BstUI CGCG 1 cut(s) 64
BstV2I GAAGAC 1 cut(s) 255
BstX2I RGATCY 1 cut(s) 238
BstYI RGATCY 1 cut(s) 238
BsuRI GGCC 3 cut(s) 201, 219, 235
BtgI CCRYGG 1 cut(s) 285
BveI ACCTGC 2 cut(s) 174, 203
Cfr13I GGNCC 1 cut(s) 233
CseI GACGC 1 cut(s) 70
Csp6I GTAC 1 cut(s) 18
CviAII CATG 4 cut(s) 34, 109, 151, 212
CviJI RGCY 5 cut(s) 201, 219, 235, 290, 296
CviKI_1 RGCY 5 cut(s) 201, 219, 235, 290, 296
CviQI GTAC 1 cut(s) 18
DpnI GATC 2 cut(s) 45, 240
DpnII GATC 2 cut(s) 43, 238
EcoNI CCTNNNNNAGG 1 cut(s) 228
FaeI CATG 4 cut(s) 37, 112, 154, 215
FaiI YATR 8 cut(s) 23, 35, 96, 110, 152, 168, 213, 260
FaqI GGGAC 1 cut(s) 321
FatI CATG 4 cut(s) 33, 108, 150, 211
FauI CCCGC 1 cut(s) 58
FblI GTMKAC 1 cut(s) 118
Fnu4HI GCNGC 1 cut(s) 199
Fsp4HI GCNGC 1 cut(s) 199
FspBI CTAG 1 cut(s) 203
GluI GCNGC 1 cut(s) 199
HaeIII GGCC 3 cut(s) 201, 219, 235
HapII CCGG 1 cut(s) 236
HgaI GACGC 1 cut(s) 70
Hin1II CATG 4 cut(s) 37, 112, 154, 215
HincII GTYRAC 2 cut(s) 119, 208
HindII GTYRAC 2 cut(s) 119, 208
HpaI GTTAAC 1 cut(s) 208
HpaII CCGG 1 cut(s) 236
Hpy166II GTNNAC 2 cut(s) 119, 208
Hpy188I TCNGA 1 cut(s) 60
Hpy188III TCNNGA 2 cut(s) 85, 242
Hpy8I GTNNAC 2 cut(s) 119, 208
Hpy99I CGWCG 2 cut(s) 120, 123
HpyCH4III ACNGT 3 cut(s) 254, 274, 339
HpyCH4IV ACGT 1 cut(s) 121
HpyCH4V TGCA 1 cut(s) 157
HpyF10VI GCNNNNNNNGC 2 cut(s) 189, 198
HpySE526I ACGT 1 cut(s) 121
Hsp92II CATG 4 cut(s) 37, 112, 154, 215
KspAI GTTAAC 1 cut(s) 208
Kzo9I GATC 2 cut(s) 43, 238
LmnI GCTCC 1 cut(s) 277
LpnPI CCDG 8 cut(s) 112, 158, 169, 208, 216, 227, 249, 296
MaeI CTAG 1 cut(s) 203
MaeII ACGT 1 cut(s) 121
MaeIII GTNAC 1 cut(s) 254
MalI GATC 2 cut(s) 45, 240
MboI GATC 2 cut(s) 43, 238
MboII GAAGA 3 cut(s) 146, 257, 260
MflI RGATCY 1 cut(s) 238
MluCI AATT 1 cut(s) 173
MnlI CCTC 2 cut(s) 114, 230
MseI TTAA 1 cut(s) 207
MspI CCGG 1 cut(s) 236
MvnI CGCG 1 cut(s) 64
MwoI GCNNNNNNNGC 2 cut(s) 189, 198
NdeII GATC 2 cut(s) 43, 238
NlaIII CATG 4 cut(s) 37, 112, 154, 215
NlaIV GGNNCC 1 cut(s) 193
NmuCI GTSAC 1 cut(s) 254
PaqCI CACCTGC 2 cut(s) 174, 203
PflMI CCANNNNNTGG 1 cut(s) 151
PkrI GCNGC 1 cut(s) 200
PspN4I GGNNCC 1 cut(s) 193
PspPI GGNCC 1 cut(s) 233
PsuI RGATCY 1 cut(s) 238
RsaI GTAC 1 cut(s) 19
RsaNI GTAC 1 cut(s) 18
SalI GTCGAC 1 cut(s) 117
SaqAI TTAA 1 cut(s) 207
SatI GCNGC 1 cut(s) 199
Sau3AI GATC 2 cut(s) 43, 238
Sau96I GGNCC 1 cut(s) 233
SetI ASST 6 cut(s) 106, 124, 188, 197, 265, 321
SgrDI CGTCGACG 1 cut(s) 117
Sse9I AATT 1 cut(s) 173
SsiI CCGC 2 cut(s) 51, 198
SspMI CTAG 1 cut(s) 203
TaaI ACNGT 3 cut(s) 254, 274, 339
TaiI ACGT 1 cut(s) 124
TaqI TCGA 3 cut(s) 84, 118, 163
TasI AATT 1 cut(s) 173
TauI GCSGC 1 cut(s) 201
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TseFI GTSAC 1 cut(s) 254
Tsp45I GTSAC 1 cut(s) 254
TspDTI ATGAA 4 cut(s) 22, 139, 153, 183
Van91I CCANNNNNTGG 1 cut(s) 151
XagI CCTNNNNNAGG 1 cut(s) 228
XmiI GTMKAC 1 cut(s) 118
XspI CTAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.