Rmu_co8449663.1_g000001

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8449663.1
OG0000308
Physical Location & Seq
Reverse (-)
76 .. 1203
1128 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8449663.1_g000001.1.cds

Sequence Viewer

Length: 1128 bp
atggcaacgatcgacgcaatggcagcccgcctggcctcctccctagccctcgatgatgggaagaacccagtggatctgcgcctgtccaagggtttgagacaacccgaggctttcatgattggcaaattactaacagcgagggaatacttgcccagatcgttcctgggaatgttccgagctgcatggaggattaatggtaatctcagggtagaggaagttggagaagatgacagagtgttgttctcattcacatacccaaacgatgttgaccgtgtttggaaaggagaaccatggggctataaccgagctctgatagcccttgcactgtacgacggtgtcagcccggcggtggaggtgcccctcaagaagtcatcatactggatgacgctgcaaggaataccacctccattccgatcggagcgcatcatgcgcctcattggaagctcgctcggcgacttcaaggaaatcgataatccggcgttcaggaatcggactatgcgcatccgagttgagatcgattacgtgaaacctctgttattccgccgtcgtttctgggtcgaagacgaagtccagttcgtagtgcagttcatgtatgacaagatcttcggtcgctgcggcacatgtggactagttactcatgttggcctcccctgttccggaccggagctagttgaagataatgatacactggtagggacagtagcgccacccatagccttgactgtcatgcgagaacaaacagtaccaaaccctaatgtaaacagggtggtgatgaataaccaaactctaattttcaaggctcaggtgccaaggagtataccagaagctcttctccctccatcggtgatgaacatgcgacgtcataagagacatgtacaaattcgggaactgctcgaaccaagatgcgatgaacatccaattaccggtatgtgtaggattagagaagatgatgaggtaacaatttctcctaaaaaactccgtttaagtctagctattggaaagaagaatttggatgcaatgactatgagtttgctagagggaccttcaaatgccaatgacccaccaaaaagaaagaggggacgcccaattggcagtgtcaataaactaccatatgggacagcaggataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

375

Amino Acids

42.4

Weight (kDa)

9.49

Isoelectric Point (pI)

40.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 862
Acc16I TGCGCA 1 cut(s) 500
AccB1I GGYRCC 2 cut(s) 355, 805
AccI GTMKAC 1 cut(s) 817
AccIII TCCGGA 1 cut(s) 656
AciI CCGC 4 cut(s) 28, 347, 541, 615
AclWI GGATC 1 cut(s) 81
AcsI RAATTY 2 cut(s) 879, 1006
AcyI GRCGYC 2 cut(s) 859, 1081
AfaI GTAC 3 cut(s) 329, 744, 876
AfiI CCNNNNNNNGG 5 cut(s) 88, 349, 656, 841, 923
AflIII ACRYGT 2 cut(s) 620, 871
AgeI ACCGGT 1 cut(s) 923
AgsI TTSAA 4 cut(s) 460, 674, 796, 1047
AhlI ACTAGT 1 cut(s) 628
AjnI CCWGG 2 cut(s) 30, 162
AluBI AGCT 6 cut(s) 179, 308, 444, 667, 827, 992
AluI AGCT 6 cut(s) 179, 308, 444, 667, 827, 992
Alw21I GWGCWC 1 cut(s) 310
Alw26I GTCTC 2 cut(s) 91, 862
AlwI GGATC 1 cut(s) 81
Ama87I CYCGRG 1 cut(s) 104
Aor13HI TCCGGA 1 cut(s) 656
AoxI GGCC 2 cut(s) 33, 643
ApeKI GCWGC 4 cut(s) 23, 179, 388, 612
ApoI RAATTY 2 cut(s) 879, 1006
ArsI GACNNNNNNTTYG 6 cut(s) 552, 584, 587, 619, 1012, 1044
AseI ATTAAT 1 cut(s) 192
AsiGI ACCGGT 1 cut(s) 923
Asp700I GAANNNNTTC 1 cut(s) 828
AspLEI GCGC 5 cut(s) 81, 423, 432, 501, 706
AspS9I GGNCC 2 cut(s) 659, 1040
AsuC2I CCSGG 1 cut(s) 344
AsuHPI GGTGA 2 cut(s) 781, 856
AvaI CYCGRG 1 cut(s) 104
AvaII GGWCC 2 cut(s) 659, 1040
BaeGI GKGCMC 1 cut(s) 360
BaeI ACNNNNGTAYC 2 cut(s) 675, 708
BanI GGYRCC 2 cut(s) 355, 805
BanII GRGCYC 1 cut(s) 310
BarI GAAGNNNNNNTAC 2 cut(s) 359, 391
BbsI GAAGAC 1 cut(s) 567
Bbv12I GWGCWC 1 cut(s) 310
BbvI GCAGC 4 cut(s) 35, 166, 375, 599
BccI CCATC 2 cut(s) 50, 847
BceAI ACGGC 1 cut(s) 528
BciT130I CCWGG 2 cut(s) 32, 164
BcnI CCSGG 1 cut(s) 344
BcoDI GTCTC 2 cut(s) 91, 862
BcuI ACTAGT 1 cut(s) 628
BfaI CTAG 5 cut(s) 44, 629, 668, 989, 1034
BfoI RGCGCY 1 cut(s) 707
BglI GCCNNNNNGGC 2 cut(s) 32, 1089
BglII AGATCT 1 cut(s) 600
BisI GCNGC 5 cut(s) 24, 180, 389, 613, 616
BlsI GCNGC 5 cut(s) 25, 181, 390, 614, 617
Bme1390I CCNGG 3 cut(s) 32, 164, 344
Bme18I GGWCC 2 cut(s) 659, 1040
BmeT110I CYCGRG 1 cut(s) 104
BmgT120I GGNCC 2 cut(s) 659, 1040
BmiI GGNNCC 3 cut(s) 357, 807, 1041
BmrFI CCNGG 3 cut(s) 32, 164, 344
BmrI ACTGGG 1 cut(s) 62
BmsI GCATC 4 cut(s) 432, 510, 893, 1003
BmuI ACTGGG 1 cut(s) 62
BpiI GAAGAC 1 cut(s) 567
Bpu10I CCTNAGC 1 cut(s) 801
BpuEI CTTGAG 1 cut(s) 347
BpuMI CCSGG 1 cut(s) 344
Bsa29I ATCGAT 2 cut(s) 468, 516
BsaAI YACGTR 1 cut(s) 523
BsaBI GATNNNNATC 1 cut(s) 912
BsaHI GRCGYC 2 cut(s) 859, 1081
BsaJI CCNNGG 5 cut(s) 87, 105, 163, 290, 809
BsaWI WCCGGW 3 cut(s) 656, 661, 923
BsaXI ACNNNNNCTCC 2 cut(s) 949, 979
Bsc4I CCNNNNNNNGG 5 cut(s) 88, 349, 656, 841, 923
Bse118I RCCGGY 1 cut(s) 923
Bse1I ACTGG 4 cut(s) 68, 383, 571, 693
Bse3DI GCAATG 2 cut(s) 24, 1023
Bse8I GATNNNNATC 1 cut(s) 912
BseAI TCCGGA 1 cut(s) 656
BseBI CCWGG 2 cut(s) 32, 164
BseCI ATCGAT 2 cut(s) 468, 516
BseDI CCNNGG 5 cut(s) 87, 105, 163, 290, 809
BseGI GGATG 4 cut(s) 387, 501, 913, 1018
BseJI GATNNNNATC 1 cut(s) 912
BseLI CCNNNNNNNGG 5 cut(s) 88, 349, 656, 841, 923
BseMI GCAATG 2 cut(s) 24, 1023
BseMII CTCAG 2 cut(s) 217, 815
BseNI ACTGG 4 cut(s) 68, 383, 571, 693
BseRI GAGGAG 1 cut(s) 28
BseSI GKGCMC 1 cut(s) 360
BseXI GCAGC 4 cut(s) 35, 166, 375, 599
BsgI GTGCAG 1 cut(s) 602
Bsh1285I CGRYCG 3 cut(s) 12, 416, 610
BshFI GGCC 2 cut(s) 35, 645
BshNI GGYRCC 2 cut(s) 355, 805
BshTI ACCGGT 1 cut(s) 923
BshVI ATCGAT 2 cut(s) 468, 516
BsiEI CGRYCG 3 cut(s) 12, 416, 610
BsiHKAI GWGCWC 1 cut(s) 310
BsiHKCI CYCGRG 1 cut(s) 104
BsiSI CCGG 5 cut(s) 344, 476, 657, 662, 924
BslFI GGGAC 3 cut(s) 709, 1053, 1092
BslI CCNNNNNNNGG 5 cut(s) 88, 349, 656, 841, 923
BsmAI GTCTC 2 cut(s) 91, 862
BsmFI GGGAC 3 cut(s) 709, 1053, 1092
BsnI GGCC 2 cut(s) 35, 645
BsoBI CYCGRG 1 cut(s) 104
Bsp1286I GDGCHC 2 cut(s) 310, 360
Bsp13I TCCGGA 1 cut(s) 656
Bsp1407I TGTACA 1 cut(s) 874
Bsp143I GATC 6 cut(s) 9, 73, 155, 413, 513, 600
Bsp19I CCATGG 1 cut(s) 290
BspACI CCGC 4 cut(s) 28, 347, 541, 615
BspANI GGCC 2 cut(s) 35, 645
BspCNI CTCAG 2 cut(s) 216, 814
BspDI ATCGAT 2 cut(s) 468, 516
BspEI TCCGGA 1 cut(s) 656
BspHI TCATGA 1 cut(s) 114
BspLI GGNNCC 3 cut(s) 357, 807, 1041
BspPI GGATC 1 cut(s) 81
BspQI GCTCTTC 1 cut(s) 834
BspT107I GGYRCC 2 cut(s) 355, 805
BsrDI GCAATG 2 cut(s) 24, 1023
BsrFI RCCGGY 1 cut(s) 923
BsrGI TGTACA 1 cut(s) 874
BsrI ACTGG 4 cut(s) 68, 383, 571, 693
BssAI RCCGGY 1 cut(s) 923
BssECI CCNNGG 5 cut(s) 87, 105, 163, 290, 809
BssMI GATC 6 cut(s) 9, 73, 155, 413, 513, 600
BssNAI GTATAC 1 cut(s) 818
BssNI GRCGYC 2 cut(s) 859, 1081
BssT1I CCWWGG 3 cut(s) 87, 290, 809
Bst1107I GTATAC 1 cut(s) 818
Bst2UI CCWGG 2 cut(s) 32, 164
Bst4CI ACNGT 6 cut(s) 272, 327, 335, 700, 724, 742
Bst6I CTCTTC 1 cut(s) 834
BstACI GRCGYC 2 cut(s) 859, 1081
BstAUI TGTACA 1 cut(s) 874
BstBAI YACGTR 1 cut(s) 523
BstC8I GCNNGC 2 cut(s) 28, 446
BstDEI CTNAG 2 cut(s) 203, 801
BstDSI CCRYGG 1 cut(s) 290
BstENI CCTNNNNNAGG 1 cut(s) 86
BstF5I GGATG 4 cut(s) 387, 501, 913, 1018
BstH2I RGCGCY 1 cut(s) 707
BstHHI GCGC 5 cut(s) 81, 423, 432, 501, 706
BstKTI GATC 6 cut(s) 12, 76, 158, 416, 516, 603
BstMAI GTCTC 2 cut(s) 91, 862
BstMBI GATC 6 cut(s) 9, 73, 155, 413, 513, 600
BstMCI CGRYCG 3 cut(s) 12, 416, 610
BstMWI GCNNNNNNNGC 7 cut(s) 23, 32, 314, 427, 429, 450, 1089
BstNI CCWGG 2 cut(s) 32, 164
BstNSI RCATGY 3 cut(s) 624, 856, 875
BstSCI CCNGG 3 cut(s) 30, 162, 342
BstSLI GKGCMC 1 cut(s) 360
BstV1I GCAGC 4 cut(s) 35, 166, 375, 599
BstV2I GAAGAC 1 cut(s) 567
BstX2I RGATCY 2 cut(s) 73, 600
BstYI RGATCY 2 cut(s) 73, 600
BstZ17I GTATAC 1 cut(s) 818
Bsu15I ATCGAT 2 cut(s) 468, 516
BsuRI GGCC 2 cut(s) 35, 645
BsuTUI ATCGAT 2 cut(s) 468, 516
BtgI CCRYGG 1 cut(s) 290
BtgZI GCGATG 1 cut(s) 921
BtsCI GGATG 4 cut(s) 387, 501, 913, 1018
BtsI GCAGTG 1 cut(s) 1099
BtsIMutI CAGTG 4 cut(s) 75, 323, 686, 1099
Cac8I GCNNGC 2 cut(s) 28, 446
CciI TCATGA 1 cut(s) 114
CfoI GCGC 5 cut(s) 81, 423, 432, 501, 706
Cfr10I RCCGGY 1 cut(s) 923
Cfr13I GGNCC 2 cut(s) 659, 1040
ClaI ATCGAT 2 cut(s) 468, 516
CpoI CGGWCCG 1 cut(s) 659
CseI GACGC 3 cut(s) 23, 394, 1089
Csp6I GTAC 3 cut(s) 328, 743, 875
CspAI ACCGGT 1 cut(s) 923
CspI CGGWCCG 1 cut(s) 659
CviQI GTAC 3 cut(s) 328, 743, 875
DdeI CTNAG 2 cut(s) 203, 801
DpnI GATC 6 cut(s) 11, 75, 157, 415, 515, 602
DpnII GATC 6 cut(s) 9, 73, 155, 413, 513, 600
Eam1104I CTCTTC 1 cut(s) 834
EarI CTCTTC 1 cut(s) 834
EciI GGCGGA 1 cut(s) 530
Ecl136II GAGCTC 1 cut(s) 308
Eco130I CCWWGG 3 cut(s) 87, 290, 809
Eco24I GRGCYC 1 cut(s) 310
Eco47I GGWCC 2 cut(s) 659, 1040
Eco53kI GAGCTC 1 cut(s) 308
Eco88I CYCGRG 1 cut(s) 104
EcoICRI GAGCTC 1 cut(s) 308
EcoNI CCTNNNNNAGG 1 cut(s) 86
EcoO109I RGGNCCY 1 cut(s) 1040
EcoRII CCWGG 2 cut(s) 30, 162
EcoT14I CCWWGG 3 cut(s) 87, 290, 809
EcoT38I GRGCYC 1 cut(s) 310
ErhI CCWWGG 3 cut(s) 87, 290, 809
FaqI GGGAC 3 cut(s) 709, 1053, 1092
FauI CCCGC 1 cut(s) 35
FauNDI CATATG 1 cut(s) 1111
FblI GTMKAC 1 cut(s) 817
Fnu4HI GCNGC 5 cut(s) 24, 180, 389, 613, 616
FokI GGATG 4 cut(s) 394, 488, 900, 1025
FriOI GRGCYC 1 cut(s) 310
Fsp4HI GCNGC 5 cut(s) 24, 180, 389, 613, 616
FspAI RTGCGCAY 1 cut(s) 500
FspBI CTAG 5 cut(s) 44, 629, 668, 989, 1034
FspI TGCGCA 1 cut(s) 500
GlaI GCGC 5 cut(s) 80, 422, 431, 500, 705
GluI GCNGC 5 cut(s) 24, 180, 389, 613, 616
HaeII RGCGCY 1 cut(s) 707
HaeIII GGCC 2 cut(s) 35, 645
HapII CCGG 5 cut(s) 344, 476, 657, 662, 924
HgaI GACGC 3 cut(s) 23, 394, 1089
HhaI GCGC 5 cut(s) 81, 423, 432, 501, 706
Hin1I GRCGYC 2 cut(s) 859, 1081
Hin6I GCGC 5 cut(s) 79, 421, 430, 499, 704
HinP1I GCGC 5 cut(s) 79, 421, 430, 499, 704
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HinfI GANTC 1 cut(s) 487
HpaII CCGG 5 cut(s) 344, 476, 657, 662, 924
HphI GGTGA 2 cut(s) 781, 856
Hpy166II GTNNAC 4 cut(s) 268, 626, 760, 818
Hpy188I TCNGA 6 cut(s) 176, 312, 413, 418, 492, 506
Hpy188III TCNNGA 5 cut(s) 115, 364, 484, 657, 884
Hpy8I GTNNAC 4 cut(s) 268, 626, 760, 818
Hpy99I CGWCG 4 cut(s) 17, 335, 549, 861
HpyAV CCTTC 1 cut(s) 1053
HpyCH4III ACNGT 6 cut(s) 272, 327, 335, 700, 724, 742
HpyCH4IV ACGT 2 cut(s) 522, 859
HpyCH4V TGCA 5 cut(s) 182, 323, 391, 583, 1016
HpyF10VI GCNNNNNNNGC 7 cut(s) 23, 32, 314, 427, 429, 450, 1089
HpyF3I CTNAG 2 cut(s) 203, 801
HpySE526I ACGT 2 cut(s) 522, 859
Hsp92I GRCGYC 2 cut(s) 859, 1081
HspAI GCGC 5 cut(s) 79, 421, 430, 499, 704
Kpn2I TCCGGA 1 cut(s) 656
Kzo9I GATC 6 cut(s) 9, 73, 155, 413, 513, 600
LguI GCTCTTC 1 cut(s) 834
LmnI GCTCC 2 cut(s) 418, 664
Lsp1109I GCAGC 4 cut(s) 35, 166, 375, 599
LweI GCATC 4 cut(s) 432, 510, 893, 1003
MaeI CTAG 5 cut(s) 44, 629, 668, 989, 1034
MaeII ACGT 2 cut(s) 522, 859
MaeIII GTNAC 2 cut(s) 631, 955
MalI GATC 6 cut(s) 11, 75, 157, 415, 515, 602
MboI GATC 6 cut(s) 9, 73, 155, 413, 513, 600
MboII GAAGA 8 cut(s) 73, 236, 572, 595, 686, 821, 956, 1015
MfeI CAATTG 1 cut(s) 1086
MflI RGATCY 2 cut(s) 73, 600
MhlI GDGCHC 2 cut(s) 310, 360
MluCI AATT 7 cut(s) 125, 789, 879, 918, 960, 1006, 1086
MmeI TCCRAC 1 cut(s) 199
MroI TCCGGA 1 cut(s) 656
MroXI GAANNNNTTC 1 cut(s) 828
MseI TTAA 2 cut(s) 192, 983
MspI CCGG 5 cut(s) 344, 476, 657, 662, 924
MspR9I CCNGG 3 cut(s) 32, 164, 344
MunI CAATTG 1 cut(s) 1086
MvaI CCWGG 2 cut(s) 32, 164
MwoI GCNNNNNNNGC 7 cut(s) 23, 32, 314, 427, 429, 450, 1089
NciI CCSGG 1 cut(s) 344
NcoI CCATGG 1 cut(s) 290
NdeI CATATG 1 cut(s) 1111
NdeII GATC 6 cut(s) 9, 73, 155, 413, 513, 600
NlaIV GGNNCC 3 cut(s) 357, 807, 1041
NmeAIII GCCGAG 1 cut(s) 429
NsbI TGCGCA 1 cut(s) 500
NspI RCATGY 3 cut(s) 624, 856, 875
PagI TCATGA 1 cut(s) 114
PciI ACATGT 2 cut(s) 620, 871
PciSI GCTCTTC 1 cut(s) 834
PdmI GAANNNNTTC 1 cut(s) 828
PfeI GAWTC 1 cut(s) 487
PflFI GACNNNGTC 2 cut(s) 335, 566
PinAI ACCGGT 1 cut(s) 923
PkrI GCNGC 5 cut(s) 25, 181, 390, 614, 617
Ple19I CGATCG 2 cut(s) 12, 416
Ppu21I YACGTR 1 cut(s) 523
PpuMI RGGWCCY 1 cut(s) 1040
PscI ACATGT 2 cut(s) 620, 871
PshBI ATTAAT 1 cut(s) 192
Psp124BI GAGCTC 1 cut(s) 310
Psp5II RGGWCCY 1 cut(s) 1040
Psp6I CCWGG 2 cut(s) 30, 162
PspGI CCWGG 2 cut(s) 30, 162
PspN4I GGNNCC 3 cut(s) 357, 807, 1041
PspPI GGNCC 2 cut(s) 659, 1040
PspPPI RGGWCCY 1 cut(s) 1040
PsrI GAACNNNNNNTAC 2 cut(s) 726, 758
PsuI RGATCY 2 cut(s) 73, 600
PsyI GACNNNGTC 2 cut(s) 335, 566
PvuI CGATCG 2 cut(s) 12, 416
RsaI GTAC 3 cut(s) 329, 744, 876
RsaNI GTAC 3 cut(s) 328, 743, 875
Rsr2I CGGWCCG 1 cut(s) 659
RsrII CGGWCCG 1 cut(s) 659
SacI GAGCTC 1 cut(s) 310
SapI GCTCTTC 1 cut(s) 834
SaqAI TTAA 2 cut(s) 192, 983
SatI GCNGC 5 cut(s) 24, 180, 389, 613, 616
Sau3AI GATC 6 cut(s) 9, 73, 155, 413, 513, 600
Sau96I GGNCC 2 cut(s) 659, 1040
ScrFI CCNGG 3 cut(s) 32, 164, 344
SduI GDGCHC 2 cut(s) 310, 360
SfaNI GCATC 4 cut(s) 432, 510, 893, 1003
SinI GGWCC 2 cut(s) 659, 1040
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
SpeI ACTAGT 1 cut(s) 628
Sse9I AATT 7 cut(s) 125, 789, 879, 918, 960, 1006, 1086
SsiI CCGC 4 cut(s) 28, 347, 541, 615
SspMI CTAG 5 cut(s) 44, 629, 668, 989, 1034
SstI GAGCTC 1 cut(s) 310
StyD4I CCNGG 3 cut(s) 30, 162, 342
StyI CCWWGG 3 cut(s) 87, 290, 809
TaaI ACNGT 6 cut(s) 272, 327, 335, 700, 724, 742
TaiI ACGT 2 cut(s) 525, 862
TaqI TCGA 6 cut(s) 12, 51, 468, 516, 558, 894
TaqII GACCGA 1 cut(s) 596
TasI AATT 7 cut(s) 125, 789, 879, 918, 960, 1006, 1086
TatI WGTACW 1 cut(s) 874
TauI GCSGC 1 cut(s) 618
TfiI GAWTC 1 cut(s) 487
Tru1I TTAA 2 cut(s) 192, 983
Tru9I TTAA 2 cut(s) 192, 983
TscAI CASTG 4 cut(s) 75, 330, 693, 1099
TseI GCWGC 4 cut(s) 23, 179, 388, 612
TspDTI ATGAA 5 cut(s) 103, 577, 788, 863, 924
TspGWI ACGGA 1 cut(s) 968
TspRI CASTG 4 cut(s) 75, 330, 693, 1099
Tth111I GACNNNGTC 2 cut(s) 335, 566
VpaK11BI GGWCC 2 cut(s) 659, 1040
VspI ATTAAT 1 cut(s) 192
XagI CCTNNNNNAGG 1 cut(s) 86
XapI RAATTY 2 cut(s) 879, 1006
XceI RCATGY 3 cut(s) 624, 856, 875
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XmiI GTMKAC 1 cut(s) 817
XmnI GAANNNNTTC 1 cut(s) 828
XspI CTAG 5 cut(s) 44, 629, 668, 989, 1034
ZraI GACGTC 1 cut(s) 860
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.