Rmu_sc0002310.1_g000016

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002310.1
OG0000308
Physical Location & Seq
Reverse (-)
70206 .. 70775
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002310.1_g000016.1.cds

Sequence Viewer

Length: 570 bp
atgttccgatctgcatggtggatcaatggcagactgagcgttgaagaagttggagaagatgacagggttctgctcactttcacagatccctctgatgtggatagggtttggaaaggtggactgtggggctacaatagggcacctgtagcactagcgtcgtacgacggtatcagtccggcgagagagataccactgaagaaatcattctactggatgacgctgcaaagggtaccaccggctttcaggtctgagcgtattatgcacctgatcggtagtacgttgggagatttcaaggagtttgttcgtccggctttccagacccgagttctgcgcatcagggtcgagatcgactatgcaaagcctctcttgtttcgttgccgcttctgggtggaagatgaagttcaattcatggtgcagtttcgatacgataagttgtttggcagatgtggtacctatggcctagttacccacgttggccttccttgttcagggccggatctggaagaagatagtgctacaccagttggagtgttggcgcagcccacggccttggcaatactacggggatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

189

Amino Acids

21.63

Weight (kDa)

7.71

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 332
Acc65I GGTACC 2 cut(s) 229, 449
AccB1I GGYRCC 3 cut(s) 139, 229, 449
AciI CCGC 1 cut(s) 379
AclWI GGATC 3 cut(s) 29, 80, 504
AcuI CTGAAG 1 cut(s) 215
AfaI GTAC 4 cut(s) 161, 231, 277, 451
AfiI CCNNNNNNNGG 2 cut(s) 385, 488
AgsI TTSAA 3 cut(s) 44, 292, 404
AlwI GGATC 3 cut(s) 29, 80, 504
Ama87I CYCGRG 1 cut(s) 321
AoxI GGCC 4 cut(s) 457, 475, 491, 546
ApeKI GCWGC 2 cut(s) 220, 538
Asp700I GAANNNNTTC 1 cut(s) 203
Asp718I GGTACC 2 cut(s) 229, 449
AspLEI GCGC 2 cut(s) 333, 538
AspS9I GGNCC 1 cut(s) 491
AvaI CYCGRG 1 cut(s) 321
BaeGI GKGCMC 1 cut(s) 142
BaeI ACNNNNGTAYC 2 cut(s) 151, 184
BanI GGYRCC 3 cut(s) 139, 229, 449
BbvI GCAGC 2 cut(s) 207, 550
BceAI ACGGC 1 cut(s) 561
BcgI CGANNNNNNTGC 4 cut(s) 138, 172, 322, 356
BfaI CTAG 2 cut(s) 152, 461
BfmI CTRYAG 1 cut(s) 144
BisI GCNGC 3 cut(s) 221, 379, 539
BlsI GCNGC 3 cut(s) 222, 380, 540
BmeT110I CYCGRG 1 cut(s) 321
BmgT120I GGNCC 1 cut(s) 491
BmiI GGNNCC 3 cut(s) 141, 231, 451
BmsI GCATC 1 cut(s) 342
BsaJI CCNNGG 2 cut(s) 543, 549
Bsc4I CCNNNNNNNGG 2 cut(s) 385, 488
Bse118I RCCGGY 1 cut(s) 235
Bse1I ACTGG 2 cut(s) 215, 521
BseDI CCNNGG 2 cut(s) 543, 549
BseGI GGATG 1 cut(s) 219
BseLI CCNNNNNNNGG 2 cut(s) 385, 488
BseMII CTCAG 2 cut(s) 26, 240
BseNI ACTGG 2 cut(s) 215, 521
BseSI GKGCMC 1 cut(s) 142
BseXI GCAGC 2 cut(s) 207, 550
BsgI GTGCAG 1 cut(s) 434
BshFI GGCC 4 cut(s) 459, 477, 493, 548
BshNI GGYRCC 3 cut(s) 139, 229, 449
BsiHKCI CYCGRG 1 cut(s) 321
BsiSI CCGG 4 cut(s) 176, 236, 308, 494
BsiWI CGTACG 1 cut(s) 159
BslI CCNNNNNNNGG 2 cut(s) 385, 488
BsnI GGCC 4 cut(s) 459, 477, 493, 548
BsoBI CYCGRG 1 cut(s) 321
Bsp1286I GDGCHC 1 cut(s) 142
Bsp143I GATC 6 cut(s) 8, 21, 85, 267, 345, 496
BspACI CCGC 1 cut(s) 379
BspANI GGCC 4 cut(s) 459, 477, 493, 548
BspCNI CTCAG 2 cut(s) 27, 241
BspLI GGNNCC 3 cut(s) 141, 231, 451
BspPI GGATC 3 cut(s) 29, 80, 504
BspT107I GGYRCC 3 cut(s) 139, 229, 449
BsrFI RCCGGY 1 cut(s) 235
BsrI ACTGG 2 cut(s) 215, 521
BssAI RCCGGY 1 cut(s) 235
BssECI CCNNGG 2 cut(s) 543, 549
BssMI GATC 6 cut(s) 8, 21, 85, 267, 345, 496
BssT1I CCWWGG 1 cut(s) 549
Bst4CI ACNGT 2 cut(s) 123, 167
BstDEI CTNAG 2 cut(s) 35, 249
BstDSI CCRYGG 1 cut(s) 543
BstENI CCTNNNNNAGG 1 cut(s) 486
BstF5I GGATG 1 cut(s) 219
BstHHI GCGC 2 cut(s) 333, 538
BstKTI GATC 6 cut(s) 11, 24, 88, 270, 348, 499
BstMBI GATC 6 cut(s) 8, 21, 85, 267, 345, 496
BstMWI GCNNNNNNNGC 3 cut(s) 36, 146, 259
BstSFI CTRYAG 1 cut(s) 144
BstSLI GKGCMC 1 cut(s) 142
BstV1I GCAGC 2 cut(s) 207, 550
BstX2I RGATCY 2 cut(s) 85, 496
BstXI CCANNNNNNTGG 1 cut(s) 550
BstYI RGATCY 2 cut(s) 85, 496
BsuRI GGCC 4 cut(s) 459, 477, 493, 548
BtgI CCRYGG 1 cut(s) 543
BtsCI GGATG 1 cut(s) 219
BtsIMutI CAGTG 1 cut(s) 191
CfoI GCGC 2 cut(s) 333, 538
Cfr10I RCCGGY 1 cut(s) 235
Cfr13I GGNCC 1 cut(s) 491
CseI GACGC 2 cut(s) 144, 226
Csp6I GTAC 4 cut(s) 160, 230, 276, 450
CviAII CATG 2 cut(s) 15, 409
CviJI RGCY 9 cut(s) 129, 239, 311, 361, 459, 477, 493, 541, 548
CviKI_1 RGCY 9 cut(s) 129, 239, 311, 361, 459, 477, 493, 541, 548
CviQI GTAC 4 cut(s) 160, 230, 276, 450
DdeI CTNAG 2 cut(s) 35, 249
DpnI GATC 6 cut(s) 10, 23, 87, 269, 347, 498
DpnII GATC 6 cut(s) 8, 21, 85, 267, 345, 496
Eco130I CCWWGG 1 cut(s) 549
Eco57I CTGAAG 1 cut(s) 215
Eco88I CYCGRG 1 cut(s) 321
EcoNI CCTNNNNNAGG 1 cut(s) 486
EcoT14I CCWWGG 1 cut(s) 549
ErhI CCWWGG 1 cut(s) 549
FaeI CATG 2 cut(s) 18, 412
FaiI YATR 5 cut(s) 16, 260, 354, 410, 456
FalI AAGNNNNNCTT 2 cut(s) 350, 382
FatI CATG 2 cut(s) 14, 408
Fnu4HI GCNGC 3 cut(s) 221, 379, 539
FokI GGATG 1 cut(s) 226
Fsp4HI GCNGC 3 cut(s) 221, 379, 539
FspBI CTAG 2 cut(s) 152, 461
FspI TGCGCA 1 cut(s) 332
GlaI GCGC 2 cut(s) 332, 537
GluI GCNGC 3 cut(s) 221, 379, 539
HaeIII GGCC 4 cut(s) 459, 477, 493, 548
HapII CCGG 4 cut(s) 176, 236, 308, 494
HgaI GACGC 2 cut(s) 144, 226
HhaI GCGC 2 cut(s) 333, 538
Hin1II CATG 2 cut(s) 18, 412
Hin6I GCGC 2 cut(s) 331, 536
HinP1I GCGC 2 cut(s) 331, 536
HpaII CCGG 4 cut(s) 176, 236, 308, 494
Hpy166II GTNNAC 1 cut(s) 119
Hpy188I TCNGA 3 cut(s) 8, 94, 250
Hpy188III TCNNGA 3 cut(s) 316, 343, 500
Hpy8I GTNNAC 1 cut(s) 119
Hpy99I CGWCG 2 cut(s) 160, 167
HpyAV CCTTC 1 cut(s) 488
HpyCH4III ACNGT 2 cut(s) 123, 167
HpyCH4IV ACGT 2 cut(s) 278, 471
HpyCH4V TGCA 5 cut(s) 14, 223, 262, 356, 415
HpyF10VI GCNNNNNNNGC 3 cut(s) 36, 146, 259
HpyF3I CTNAG 2 cut(s) 35, 249
HpySE526I ACGT 2 cut(s) 278, 471
Hsp92II CATG 2 cut(s) 18, 412
HspAI GCGC 2 cut(s) 331, 536
KpnI GGTACC 2 cut(s) 233, 453
Kzo9I GATC 6 cut(s) 8, 21, 85, 267, 345, 496
Lsp1109I GCAGC 2 cut(s) 207, 550
LweI GCATC 1 cut(s) 342
MaeI CTAG 2 cut(s) 152, 461
MaeII ACGT 2 cut(s) 278, 471
MaeIII GTNAC 1 cut(s) 463
MalI GATC 6 cut(s) 10, 23, 87, 269, 347, 498
MboI GATC 6 cut(s) 8, 21, 85, 267, 345, 496
MboII GAAGA 6 cut(s) 56, 68, 208, 404, 515, 518
MflI RGATCY 2 cut(s) 85, 496
MhlI GDGCHC 1 cut(s) 142
MluCI AATT 1 cut(s) 404
MmeI TCCRAC 2 cut(s) 31, 505
MnlI CCTC 2 cut(s) 100, 372
MroXI GAANNNNTTC 1 cut(s) 203
MspI CCGG 4 cut(s) 176, 236, 308, 494
MwoI GCNNNNNNNGC 3 cut(s) 36, 146, 259
NdeII GATC 6 cut(s) 8, 21, 85, 267, 345, 496
NlaIII CATG 2 cut(s) 18, 412
NlaIV GGNNCC 3 cut(s) 141, 231, 451
NsbI TGCGCA 1 cut(s) 332
PdmI GAANNNNTTC 1 cut(s) 203
Pfl23II CGTACG 1 cut(s) 159
PkrI GCNGC 3 cut(s) 222, 380, 540
PspLI CGTACG 1 cut(s) 159
PspN4I GGNNCC 3 cut(s) 141, 231, 451
PspPI GGNCC 1 cut(s) 491
PsuI RGATCY 2 cut(s) 85, 496
RsaI GTAC 4 cut(s) 161, 231, 277, 451
RsaNI GTAC 4 cut(s) 160, 230, 276, 450
SatI GCNGC 3 cut(s) 221, 379, 539
Sau3AI GATC 6 cut(s) 8, 21, 85, 267, 345, 496
Sau96I GGNCC 1 cut(s) 491
SduI GDGCHC 1 cut(s) 142
SetI ASST 7 cut(s) 118, 145, 248, 267, 281, 455, 474
SfaNI GCATC 1 cut(s) 342
SfcI CTRYAG 1 cut(s) 144
Sse9I AATT 1 cut(s) 404
SsiI CCGC 1 cut(s) 379
SspMI CTAG 2 cut(s) 152, 461
StyI CCWWGG 1 cut(s) 549
TaaI ACNGT 2 cut(s) 123, 167
TaiI ACGT 2 cut(s) 281, 474
TaqI TCGA 3 cut(s) 342, 348, 421
TasI AATT 1 cut(s) 404
TauI GCSGC 1 cut(s) 381
TscAI CASTG 1 cut(s) 198
TseI GCWGC 2 cut(s) 220, 538
TspDTI ATGAA 2 cut(s) 397, 411
TspRI CASTG 1 cut(s) 198
XagI CCTNNNNNAGG 1 cut(s) 486
XmnI GAANNNNTTC 1 cut(s) 203
XspI CTAG 2 cut(s) 152, 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.