Rmu_sc0010715.1_g000005

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010715.1
OG0000308
Physical Location & Seq
Forward (+)
17272 .. 17691
420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010715.1_g000005.1.cds

Sequence Viewer

Length: 420 bp
atggaaacgatcgatgcaatgacaacccgctcggcctcctctctagccttggctaacgggaagaaaccggtggatctgcgcccgtccaaggggttgagacaacccgaagctttcatggttggcaagttacttacggtgagggaatactctcgtcgatcgttcctggaaatgtttcggtctgcatggaggattaatggcagtctccgagttgaggaagttggagaagatgacagggtcctgttctctttcacatacccaaatgatgttgatcgggtttggaaaggaggaccatggggctataacagagctccaatagcccttgcaccgtatgttggtgtcaacccagcggtggaagtaccgctgaagaagtcatcatactggatgacgctacaaggagtaccgccggcgttcaaatcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

139

Amino Acids

15.63

Weight (kDa)

9.79

Isoelectric Point (pI)

43.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 30
AciI CCGC 4 cut(s) 28, 347, 359, 401
AclWI GGATC 1 cut(s) 81
AcuI CTGAAG 1 cut(s) 383
AfaI GTAC 2 cut(s) 357, 399
AfiI CCNNNNNNNGG 5 cut(s) 88, 89, 211, 332, 349
AgeI ACCGGT 1 cut(s) 67
AgsI TTSAA 1 cut(s) 412
AjnI CCWGG 1 cut(s) 162
AluBI AGCT 2 cut(s) 110, 308
AluI AGCT 2 cut(s) 110, 308
Alw21I GWGCWC 1 cut(s) 310
Alw26I GTCTC 2 cut(s) 91, 206
AlwI GGATC 1 cut(s) 81
AoxI GGCC 1 cut(s) 33
AseI ATTAAT 1 cut(s) 192
AsiGI ACCGGT 1 cut(s) 67
Asp700I GAANNNNTTC 1 cut(s) 171
AspLEI GCGC 1 cut(s) 81
AspS9I GGNCC 2 cut(s) 235, 287
AsuHPI GGTGA 1 cut(s) 148
AvaII GGWCC 2 cut(s) 235, 287
BanII GRGCYC 1 cut(s) 310
BarI GAAGNNNNNNTAC 2 cut(s) 359, 391
Bbv12I GWGCWC 1 cut(s) 310
BciT130I CCWGG 1 cut(s) 164
BcoDI GTCTC 2 cut(s) 91, 206
BfaI CTAG 1 cut(s) 44
Bme1390I CCNGG 1 cut(s) 164
Bme18I GGWCC 2 cut(s) 235, 287
BmgT120I GGNCC 2 cut(s) 235, 287
BmiI GGNNCC 1 cut(s) 236
BmrFI CCNGG 1 cut(s) 164
BmsI GCATC 1 cut(s) 4
Bsa29I ATCGAT 1 cut(s) 12
BsaBI GATNNNNATC 1 cut(s) 267
BsaJI CCNNGG 3 cut(s) 48, 87, 290
BsaWI WCCGGW 1 cut(s) 67
Bsc4I CCNNNNNNNGG 5 cut(s) 88, 89, 211, 332, 349
Bse118I RCCGGY 2 cut(s) 67, 403
Bse1I ACTGG 1 cut(s) 383
Bse3DI GCAATG 1 cut(s) 24
Bse8I GATNNNNATC 1 cut(s) 267
BseBI CCWGG 1 cut(s) 164
BseCI ATCGAT 1 cut(s) 12
BseDI CCNNGG 3 cut(s) 48, 87, 290
BseGI GGATG 1 cut(s) 387
BseJI GATNNNNATC 1 cut(s) 267
BseLI CCNNNNNNNGG 5 cut(s) 88, 89, 211, 332, 349
BseMI GCAATG 1 cut(s) 24
BseNI ACTGG 1 cut(s) 383
BseRI GAGGAG 1 cut(s) 28
BseYI CCCAGC 1 cut(s) 343
Bsh1285I CGRYCG 2 cut(s) 12, 158
BshFI GGCC 1 cut(s) 35
BshTI ACCGGT 1 cut(s) 67
BshVI ATCGAT 1 cut(s) 12
BsiEI CGRYCG 2 cut(s) 12, 158
BsiHKAI GWGCWC 1 cut(s) 310
BsiSI CCGG 2 cut(s) 68, 404
BslI CCNNNNNNNGG 5 cut(s) 88, 89, 211, 332, 349
BsmAI GTCTC 2 cut(s) 91, 206
BsnI GGCC 1 cut(s) 35
Bsp1286I GDGCHC 1 cut(s) 310
Bsp143I GATC 4 cut(s) 9, 73, 155, 268
Bsp19I CCATGG 1 cut(s) 290
BspACI CCGC 4 cut(s) 28, 347, 359, 401
BspANI GGCC 1 cut(s) 35
BspDI ATCGAT 1 cut(s) 12
BspLI GGNNCC 1 cut(s) 236
BspPI GGATC 1 cut(s) 81
BsrBI CCGCTC 1 cut(s) 30
BsrDI GCAATG 1 cut(s) 24
BsrFI RCCGGY 2 cut(s) 67, 403
BsrI ACTGG 1 cut(s) 383
BssAI RCCGGY 2 cut(s) 67, 403
BssECI CCNNGG 3 cut(s) 48, 87, 290
BssMI GATC 4 cut(s) 9, 73, 155, 268
BssT1I CCWWGG 3 cut(s) 48, 87, 290
Bst2UI CCWGG 1 cut(s) 164
Bst4CI ACNGT 2 cut(s) 136, 327
BstC8I GCNNGC 1 cut(s) 405
BstDSI CCRYGG 1 cut(s) 290
BstF5I GGATG 1 cut(s) 387
BstHHI GCGC 1 cut(s) 81
BstKTI GATC 4 cut(s) 12, 76, 158, 271
BstMAI GTCTC 2 cut(s) 91, 206
BstMBI GATC 4 cut(s) 9, 73, 155, 268
BstMCI CGRYCG 2 cut(s) 12, 158
BstMWI GCNNNNNNNGC 1 cut(s) 314
BstNI CCWGG 1 cut(s) 164
BstSCI CCNGG 1 cut(s) 162
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
Bsu15I ATCGAT 1 cut(s) 12
BsuRI GGCC 1 cut(s) 35
BsuTUI ATCGAT 1 cut(s) 12
BtgI CCRYGG 1 cut(s) 290
BtsCI GGATG 1 cut(s) 387
Cac8I GCNNGC 1 cut(s) 405
CfoI GCGC 1 cut(s) 81
Cfr10I RCCGGY 2 cut(s) 67, 403
Cfr13I GGNCC 2 cut(s) 235, 287
ClaI ATCGAT 1 cut(s) 12
CseI GACGC 1 cut(s) 394
Csp6I GTAC 2 cut(s) 356, 398
CspAI ACCGGT 1 cut(s) 67
CviAII CATG 3 cut(s) 115, 183, 291
CviJI RGCY 7 cut(s) 35, 47, 53, 110, 297, 308, 317
CviKI_1 RGCY 7 cut(s) 35, 47, 53, 110, 297, 308, 317
CviQI GTAC 2 cut(s) 356, 398
DpnI GATC 4 cut(s) 11, 75, 157, 270
DpnII GATC 4 cut(s) 9, 73, 155, 268
Ecl136II GAGCTC 1 cut(s) 308
Eco130I CCWWGG 3 cut(s) 48, 87, 290
Eco24I GRGCYC 1 cut(s) 310
Eco47I GGWCC 2 cut(s) 235, 287
Eco53kI GAGCTC 1 cut(s) 308
Eco57I CTGAAG 1 cut(s) 383
EcoICRI GAGCTC 1 cut(s) 308
EcoO109I RGGNCCY 1 cut(s) 235
EcoRII CCWGG 1 cut(s) 162
EcoT14I CCWWGG 3 cut(s) 48, 87, 290
EcoT38I GRGCYC 1 cut(s) 310
ErhI CCWWGG 3 cut(s) 48, 87, 290
FaeI CATG 3 cut(s) 118, 186, 294
FaiI YATR 8 cut(s) 116, 184, 253, 292, 300, 330, 376, 418
FatI CATG 3 cut(s) 114, 182, 290
FauI CCCGC 1 cut(s) 35
FokI GGATG 1 cut(s) 394
FriOI GRGCYC 1 cut(s) 310
FspBI CTAG 1 cut(s) 44
GlaI GCGC 1 cut(s) 80
GsaI CCCAGC 1 cut(s) 347
HaeIII GGCC 1 cut(s) 35
HapII CCGG 2 cut(s) 68, 404
HgaI GACGC 1 cut(s) 394
HhaI GCGC 1 cut(s) 81
Hin1II CATG 3 cut(s) 118, 186, 294
Hin6I GCGC 1 cut(s) 79
HinP1I GCGC 1 cut(s) 79
HincII GTYRAC 1 cut(s) 340
HindII GTYRAC 1 cut(s) 340
HindIII AAGCTT 1 cut(s) 108
HpaII CCGG 2 cut(s) 68, 404
HphI GGTGA 1 cut(s) 148
Hpy166II GTNNAC 1 cut(s) 340
Hpy188I TCNGA 1 cut(s) 206
Hpy8I GTNNAC 1 cut(s) 340
Hpy99I CGWCG 1 cut(s) 156
HpyCH4III ACNGT 2 cut(s) 136, 327
HpyCH4V TGCA 3 cut(s) 17, 182, 323
HpyF10VI GCNNNNNNNGC 1 cut(s) 314
Hsp92II CATG 3 cut(s) 118, 186, 294
HspAI GCGC 1 cut(s) 79
KroI GCCGGC 1 cut(s) 403
KroNI GCCGGC 1 cut(s) 405
Kzo9I GATC 4 cut(s) 9, 73, 155, 268
LmnI GCTCC 1 cut(s) 313
LpnPI CCDG 7 cut(s) 81, 149, 176, 217, 251, 357, 364
LweI GCATC 1 cut(s) 4
MaeI CTAG 1 cut(s) 44
MaeIII GTNAC 1 cut(s) 126
MalI GATC 4 cut(s) 11, 75, 157, 270
MbiI CCGCTC 1 cut(s) 30
MboI GATC 4 cut(s) 9, 73, 155, 268
MboII GAAGA 3 cut(s) 73, 236, 376
MflI RGATCY 1 cut(s) 73
MhlI GDGCHC 1 cut(s) 310
MmeI TCCRAC 1 cut(s) 199
MnlI CCTC 6 cut(s) 46, 49, 132, 180, 205, 278
MreI CGCCGGCG 1 cut(s) 403
MroNI GCCGGC 1 cut(s) 403
MroXI GAANNNNTTC 1 cut(s) 171
MseI TTAA 1 cut(s) 192
MspA1I CMGCKG 2 cut(s) 347, 361
MspI CCGG 2 cut(s) 68, 404
MspR9I CCNGG 1 cut(s) 164
MvaI CCWGG 1 cut(s) 164
MwoI GCNNNNNNNGC 1 cut(s) 314
NaeI GCCGGC 1 cut(s) 405
NcoI CCATGG 1 cut(s) 290
NdeII GATC 4 cut(s) 9, 73, 155, 268
NgoMIV GCCGGC 1 cut(s) 403
NlaIII CATG 3 cut(s) 118, 186, 294
NlaIV GGNNCC 1 cut(s) 236
NmeAIII GCCGAG 1 cut(s) 11
PdiI GCCGGC 1 cut(s) 405
PdmI GAANNNNTTC 1 cut(s) 171
PflFI GACNNNGTC 1 cut(s) 233
PfoI TCCNGGA 1 cut(s) 162
PinAI ACCGGT 1 cut(s) 67
Ple19I CGATCG 2 cut(s) 12, 158
PpuMI RGGWCCY 1 cut(s) 235
PshBI ATTAAT 1 cut(s) 192
Psp124BI GAGCTC 1 cut(s) 310
Psp5II RGGWCCY 1 cut(s) 235
Psp6I CCWGG 1 cut(s) 162
PspFI CCCAGC 1 cut(s) 343
PspGI CCWGG 1 cut(s) 162
PspN4I GGNNCC 1 cut(s) 236
PspPI GGNCC 2 cut(s) 235, 287
PspPPI RGGWCCY 1 cut(s) 235
PsuI RGATCY 1 cut(s) 73
PsyI GACNNNGTC 1 cut(s) 233
PvuI CGATCG 2 cut(s) 12, 158
RsaI GTAC 2 cut(s) 357, 399
RsaNI GTAC 2 cut(s) 356, 398
SacI GAGCTC 1 cut(s) 310
SaqAI TTAA 1 cut(s) 192
Sau3AI GATC 4 cut(s) 9, 73, 155, 268
Sau96I GGNCC 2 cut(s) 235, 287
ScrFI CCNGG 1 cut(s) 164
SduI GDGCHC 1 cut(s) 310
SetI ASST 2 cut(s) 112, 310
SfaNI GCATC 1 cut(s) 4
SgrAI CRCCGGYG 1 cut(s) 403
SinI GGWCC 2 cut(s) 235, 287
SsiI CCGC 4 cut(s) 28, 347, 359, 401
SspMI CTAG 1 cut(s) 44
SstI GAGCTC 1 cut(s) 310
StyD4I CCNGG 1 cut(s) 162
StyI CCWWGG 3 cut(s) 48, 87, 290
TaaI ACNGT 2 cut(s) 136, 327
TaqI TCGA 2 cut(s) 12, 154
TaqII GACCGA 1 cut(s) 165
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TspDTI ATGAA 1 cut(s) 103
Tth111I GACNNNGTC 1 cut(s) 233
VpaK11BI GGWCC 2 cut(s) 235, 287
VspI ATTAAT 1 cut(s) 192
XmnI GAANNNNTTC 1 cut(s) 171
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.