Rmu_sc0024234.1_g000001

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0024234.1
OG0000308
Physical Location & Seq
Reverse (-)
138 .. 1000
863 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0024234.1_g000001.1.cds

Sequence Viewer

Length: 645 bp
atggcggacattgacgctatggctgcccgactggcatcgtctttggcactggcggaggggaagagagcagtggatctgaggccctccaagggcaagggtctccgccaaccggaggtggatcgagttcttttctcattctcggatccggtggatcgcgctcttgtgtggcgtggtggcccgtggggtttcaaccgagcccctgtagcactggcagaatatgatgggatcgaaccagtcgaacaagtgttgctgcaacgtttttcatattgggatacgctgttggatgtgctgccggcgttccgatccgaaaggcccatacttactcaacgtctctttcagttggaggatcgagtggaggtgctggtgaagttccgttttgacaaactaattggcaggtgtaacaactgtgggtttataacccatgtgggattaccatgtcctagaccggtgttggaagatggggttggacatgacaggcctcgcctggtggagcagcgtcgcggtgctgctgaagcaaccttagcggttcgagcaccggaggctaggccaaaccctagcggacctactttggttttcaaggcacaagtcctccctgggatagctgaaaccttggcggtgttgtcggcaggctctttccttccttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

214

Amino Acids

23.59

Weight (kDa)

8.53

Isoelectric Point (pI)

38.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
Image
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Publication-ready
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Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 416
AarI CACCTGC 1 cut(s) 384
Acc36I ACCTGC 1 cut(s) 384
AccII CGCG 2 cut(s) 156, 501
AciI CCGC 7 cut(s) 5, 53, 103, 501, 524, 558, 614
AclI AACGTT 1 cut(s) 256
AclWI GGATC 8 cut(s) 81, 126, 137, 150, 159, 233, 297, 354
AcuI CTGAAG 1 cut(s) 531
AfiI CCNNNNNNNGG 3 cut(s) 89, 109, 112
AgeI ACCGGT 1 cut(s) 445
AgsI TTSAA 2 cut(s) 190, 577
AjnI CCWGG 2 cut(s) 483, 592
AjuI GAANNNNNNNTTGG 2 cut(s) 447, 479
AluBI AGCT 1 cut(s) 602
AluI AGCT 1 cut(s) 602
Alw21I GWGCWC 1 cut(s) 535
Alw26I GTCTC 2 cut(s) 104, 335
AlwI GGATC 8 cut(s) 81, 126, 137, 150, 159, 233, 297, 354
AoxI GGCC 5 cut(s) 80, 175, 311, 476, 545
ApeKI GCWGC 5 cut(s) 23, 250, 289, 493, 506
AsiGI ACCGGT 1 cut(s) 445
AspLEI GCGC 1 cut(s) 158
AspS9I GGNCC 4 cut(s) 81, 176, 312, 560
AsuHPI GGTGA 1 cut(s) 376
AvaII GGWCC 1 cut(s) 560
BamHI GGATCC 1 cut(s) 142
BanII GRGCYC 1 cut(s) 199
Bbv12I GWGCWC 1 cut(s) 535
BbvI GCAGC 5 cut(s) 10, 237, 276, 493, 505
BccI CCATC 2 cut(s) 215, 452
BciT130I CCWGG 2 cut(s) 485, 594
BciVI GTATCC 1 cut(s) 265
BcoDI GTCTC 2 cut(s) 104, 335
BfaI CTAG 3 cut(s) 441, 543, 555
BfmI CTRYAG 1 cut(s) 201
BfuAI ACCTGC 1 cut(s) 384
BfuI GTATCC 1 cut(s) 265
BglI GCCNNNNNGGC 1 cut(s) 32
BisI GCNGC 5 cut(s) 24, 251, 290, 494, 507
BlsI GCNGC 5 cut(s) 25, 252, 291, 495, 508
Bme1390I CCNGG 2 cut(s) 485, 594
Bme18I GGWCC 1 cut(s) 560
BmgT120I GGNCC 4 cut(s) 81, 176, 312, 560
BmiI GGNNCC 1 cut(s) 144
BmrFI CCNGG 2 cut(s) 485, 594
BmsI GCATC 1 cut(s) 44
Bpu10I CCTNAGC 1 cut(s) 520
BsaI GGTCTC 1 cut(s) 104
BsaJI CCNNGG 5 cut(s) 87, 179, 592, 593, 609
BsaWI WCCGGW 4 cut(s) 109, 145, 445, 535
BsaXI ACNNNNNCTCC 2 cut(s) 573, 603
Bsc4I CCNNNNNNNGG 3 cut(s) 89, 109, 112
Bse118I RCCGGY 2 cut(s) 292, 445
Bse1I ACTGG 4 cut(s) 36, 54, 213, 233
BseBI CCWGG 2 cut(s) 485, 594
BseDI CCNNGG 5 cut(s) 87, 179, 592, 593, 609
BseGI GGATG 1 cut(s) 289
BseLI CCNNNNNNNGG 3 cut(s) 89, 109, 112
BseMII CTCAG 1 cut(s) 68
BseNI ACTGG 4 cut(s) 36, 54, 213, 233
BseXI GCAGC 5 cut(s) 10, 237, 276, 493, 505
Bsh1236I CGCG 2 cut(s) 156, 501
BshFI GGCC 5 cut(s) 82, 177, 313, 478, 547
BshTI ACCGGT 1 cut(s) 445
BsiHKAI GWGCWC 1 cut(s) 535
BsiSI CCGG 5 cut(s) 110, 146, 293, 446, 536
BslI CCNNNNNNNGG 3 cut(s) 89, 109, 112
BsmAI GTCTC 2 cut(s) 104, 335
BsmBI CGTCTC 1 cut(s) 335
BsnI GGCC 5 cut(s) 82, 177, 313, 478, 547
Bso31I GGTCTC 1 cut(s) 104
Bsp1286I GDGCHC 2 cut(s) 199, 535
Bsp143I GATC 7 cut(s) 73, 118, 142, 151, 225, 302, 346
BspACI CCGC 7 cut(s) 5, 53, 103, 501, 524, 558, 614
BspANI GGCC 5 cut(s) 82, 177, 313, 478, 547
BspCNI CTCAG 1 cut(s) 69
BspFNI CGCG 2 cut(s) 156, 501
BspLI GGNNCC 1 cut(s) 144
BspMI ACCTGC 1 cut(s) 384
BspPI GGATC 8 cut(s) 81, 126, 137, 150, 159, 233, 297, 354
BspTNI GGTCTC 1 cut(s) 104
BsrFI RCCGGY 2 cut(s) 292, 445
BsrI ACTGG 4 cut(s) 36, 54, 213, 233
BssAI RCCGGY 2 cut(s) 292, 445
BssECI CCNNGG 5 cut(s) 87, 179, 592, 593, 609
BssMI GATC 7 cut(s) 73, 118, 142, 151, 225, 302, 346
BssT1I CCWWGG 2 cut(s) 87, 609
Bst2UI CCWGG 2 cut(s) 485, 594
Bst4CI ACNGT 1 cut(s) 407
Bst6I CTCTTC 1 cut(s) 56
BstC8I GCNNGC 2 cut(s) 294, 628
BstDEI CTNAG 3 cut(s) 77, 520, 642
BstDSI CCRYGG 1 cut(s) 179
BstF5I GGATG 1 cut(s) 289
BstFNI CGCG 2 cut(s) 156, 501
BstHHI GCGC 1 cut(s) 158
BstKTI GATC 7 cut(s) 76, 121, 145, 154, 228, 305, 349
BstMAI GTCTC 2 cut(s) 104, 335
BstMBI GATC 7 cut(s) 73, 118, 142, 151, 225, 302, 346
BstMWI GCNNNNNNNGC 7 cut(s) 23, 32, 203, 512, 521, 530, 539
BstNI CCWGG 2 cut(s) 485, 594
BstSCI CCNGG 2 cut(s) 483, 592
BstSFI CTRYAG 1 cut(s) 201
BstUI CGCG 2 cut(s) 156, 501
BstV1I GCAGC 5 cut(s) 10, 237, 276, 493, 505
BstX2I RGATCY 2 cut(s) 73, 142
BstYI RGATCY 2 cut(s) 73, 142
BsuI GTATCC 1 cut(s) 265
BsuRI GGCC 5 cut(s) 82, 177, 313, 478, 547
BtgI CCRYGG 1 cut(s) 179
BtsCI GGATG 1 cut(s) 289
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 3 cut(s) 47, 75, 206
BveI ACCTGC 1 cut(s) 384
Cac8I GCNNGC 2 cut(s) 294, 628
CfoI GCGC 1 cut(s) 158
Cfr10I RCCGGY 2 cut(s) 292, 445
Cfr13I GGNCC 4 cut(s) 81, 176, 312, 560
CseI GACGC 2 cut(s) 23, 485
CspAI ACCGGT 1 cut(s) 445
CviAII CATG 3 cut(s) 422, 435, 470
DdeI CTNAG 3 cut(s) 77, 520, 642
DpnI GATC 7 cut(s) 75, 120, 144, 153, 227, 304, 348
DpnII GATC 7 cut(s) 73, 118, 142, 151, 225, 302, 346
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
EciI GGCGGA 3 cut(s) 20, 68, 92
Eco130I CCWWGG 2 cut(s) 87, 609
Eco147I AGGCCT 1 cut(s) 478
Eco24I GRGCYC 1 cut(s) 199
Eco31I GGTCTC 1 cut(s) 104
Eco47I GGWCC 1 cut(s) 560
Eco57I CTGAAG 1 cut(s) 531
EcoO109I RGGNCCY 1 cut(s) 81
EcoRII CCWGG 2 cut(s) 483, 592
EcoT14I CCWWGG 2 cut(s) 87, 609
EcoT38I GRGCYC 1 cut(s) 199
ErhI CCWWGG 2 cut(s) 87, 609
Esp3I CGTCTC 1 cut(s) 335
FaeI CATG 3 cut(s) 425, 438, 473
FaiI YATR 8 cut(s) 20, 219, 265, 317, 416, 423, 436, 471
FatI CATG 3 cut(s) 421, 434, 469
Fnu4HI GCNGC 5 cut(s) 24, 251, 290, 494, 507
FokI GGATG 1 cut(s) 296
FriOI GRGCYC 1 cut(s) 199
Fsp4HI GCNGC 5 cut(s) 24, 251, 290, 494, 507
FspBI CTAG 3 cut(s) 441, 543, 555
GlaI GCGC 1 cut(s) 157
GluI GCNGC 5 cut(s) 24, 251, 290, 494, 507
HaeIII GGCC 5 cut(s) 82, 177, 313, 478, 547
HapII CCGG 5 cut(s) 110, 146, 293, 446, 536
HgaI GACGC 2 cut(s) 23, 485
HhaI GCGC 1 cut(s) 158
Hin1II CATG 3 cut(s) 425, 438, 473
Hin6I GCGC 1 cut(s) 156
HinP1I GCGC 1 cut(s) 156
HpaII CCGG 5 cut(s) 110, 146, 293, 446, 536
HphI GGTGA 1 cut(s) 376
Hpy188I TCNGA 4 cut(s) 78, 142, 302, 307
Hpy99I CGWCG 1 cut(s) 501
HpyCH4III ACNGT 1 cut(s) 407
HpyCH4IV ACGT 2 cut(s) 256, 328
HpyCH4V TGCA 1 cut(s) 253
HpyF10VI GCNNNNNNNGC 7 cut(s) 23, 32, 203, 512, 521, 530, 539
HpyF3I CTNAG 3 cut(s) 77, 520, 642
HpySE526I ACGT 2 cut(s) 256, 328
Hsp92II CATG 3 cut(s) 425, 438, 473
HspAI GCGC 1 cut(s) 156
KroI GCCGGC 1 cut(s) 292
KroNI GCCGGC 1 cut(s) 294
Kzo9I GATC 7 cut(s) 73, 118, 142, 151, 225, 302, 346
LmnI GCTCC 1 cut(s) 490
Lsp1109I GCAGC 5 cut(s) 10, 237, 276, 493, 505
LweI GCATC 1 cut(s) 44
MaeI CTAG 3 cut(s) 441, 543, 555
MaeII ACGT 2 cut(s) 256, 328
MaeIII GTNAC 1 cut(s) 398
MalI GATC 7 cut(s) 75, 120, 144, 153, 227, 304, 348
MboI GATC 7 cut(s) 73, 118, 142, 151, 225, 302, 346
MboII GAAGA 2 cut(s) 73, 467
MflI RGATCY 2 cut(s) 73, 142
MhlI GDGCHC 2 cut(s) 199, 535
MluCI AATT 1 cut(s) 387
MmeI TCCRAC 4 cut(s) 261, 321, 432, 445
MnlI CCTC 9 cut(s) 49, 72, 94, 106, 337, 349, 489, 532, 599
MroNI GCCGGC 1 cut(s) 292
MspI CCGG 5 cut(s) 110, 146, 293, 446, 536
MspR9I CCNGG 2 cut(s) 485, 594
MvaI CCWGG 2 cut(s) 485, 594
MvnI CGCG 2 cut(s) 156, 501
MwoI GCNNNNNNNGC 7 cut(s) 23, 32, 203, 512, 521, 530, 539
NaeI GCCGGC 1 cut(s) 294
NdeII GATC 7 cut(s) 73, 118, 142, 151, 225, 302, 346
NgoMIV GCCGGC 1 cut(s) 292
NlaIII CATG 3 cut(s) 425, 438, 473
NlaIV GGNNCC 1 cut(s) 144
PaqCI CACCTGC 1 cut(s) 384
PasI CCCWGGG 1 cut(s) 593
PceI AGGCCT 1 cut(s) 478
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PdiI GCCGGC 1 cut(s) 294
PinAI ACCGGT 1 cut(s) 445
PkrI GCNGC 5 cut(s) 25, 252, 291, 495, 508
PsiI TTATAA 1 cut(s) 416
Psp1406I AACGTT 1 cut(s) 256
Psp6I CCWGG 2 cut(s) 483, 592
PspGI CCWGG 2 cut(s) 483, 592
PspN4I GGNNCC 1 cut(s) 144
PspPI GGNCC 4 cut(s) 81, 176, 312, 560
PsuI RGATCY 2 cut(s) 73, 142
SatI GCNGC 5 cut(s) 24, 251, 290, 494, 507
Sau3AI GATC 7 cut(s) 73, 118, 142, 151, 225, 302, 346
Sau96I GGNCC 4 cut(s) 81, 176, 312, 560
ScrFI CCNGG 2 cut(s) 485, 594
SduI GDGCHC 2 cut(s) 199, 535
SetI ASST 9 cut(s) 117, 259, 331, 360, 398, 521, 565, 604, 611
SfaNI GCATC 1 cut(s) 44
SfcI CTRYAG 1 cut(s) 201
SinI GGWCC 1 cut(s) 560
Sse9I AATT 1 cut(s) 387
SseBI AGGCCT 1 cut(s) 478
SsiI CCGC 7 cut(s) 5, 53, 103, 501, 524, 558, 614
SspMI CTAG 3 cut(s) 441, 543, 555
StuI AGGCCT 1 cut(s) 478
StyD4I CCNGG 2 cut(s) 483, 592
StyI CCWWGG 2 cut(s) 87, 609
TaaI ACNGT 1 cut(s) 407
TaiI ACGT 2 cut(s) 259, 331
TaqI TCGA 5 cut(s) 121, 228, 237, 349, 529
TasI AATT 1 cut(s) 387
TscAI CASTG 3 cut(s) 54, 75, 213
TseI GCWGC 5 cut(s) 23, 250, 289, 493, 506
TspDTI ATGAA 1 cut(s) 252
TspGWI ACGGA 1 cut(s) 362
TspRI CASTG 3 cut(s) 54, 75, 213
VpaK11BI GGWCC 1 cut(s) 560
XspI CTAG 3 cut(s) 441, 543, 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.