Rmu_sc0000431.1_g000022

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000431.1
OG0000308
Physical Location & Seq
Forward (+)
132305 .. 132604
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000431.1_g000022.1.cds

Sequence Viewer

Length: 300 bp
atggcaattgatgcaatggtcgcacgtctcgctgcctctcttgctctggcaaaggggaagaggcctgtggatttgcgtccttccaagggactacgacaacaggaggctttcatggtgggaaagcttctcacagcgtgggactatactcgccgctcgtttatggggatgttccgatctgcatggagggtgaatggcactctccgggtggaggaaactggagaagatgaccgtgttttgttctccttttctgatccggctgacagggttagcgtttggaagggaggaccatggggcttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

11.14

Weight (kDa)

10.24

Isoelectric Point (pI)

40.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 153
AciI CCGC 1 cut(s) 151
AclWI GGATC 1 cut(s) 245
AdeI CACNNNGTG 1 cut(s) 135
AfiI CCNNNNNNNGG 2 cut(s) 86, 208
AjiI CACGTC 1 cut(s) 26
AluBI AGCT 1 cut(s) 124
AluI AGCT 1 cut(s) 124
Alw26I GTCTC 1 cut(s) 32
AlwI GGATC 1 cut(s) 245
AoxI GGCC 1 cut(s) 62
ApeKI GCWGC 1 cut(s) 32
AspS9I GGNCC 1 cut(s) 284
AsuC2I CCSGG 1 cut(s) 203
AsuHPI GGTGA 1 cut(s) 199
AvaII GGWCC 1 cut(s) 284
BbvI GCAGC 1 cut(s) 19
BcnI CCSGG 1 cut(s) 203
BcoDI GTCTC 1 cut(s) 32
BisI GCNGC 2 cut(s) 33, 151
BlsI GCNGC 2 cut(s) 34, 152
Bme1390I CCNGG 1 cut(s) 203
Bme18I GGWCC 1 cut(s) 284
BmgBI CACGTC 1 cut(s) 26
BmgT120I GGNCC 1 cut(s) 284
BmrFI CCNGG 1 cut(s) 203
BpmI CTGGAG 1 cut(s) 237
BpuMI CCSGG 1 cut(s) 203
BsaJI CCNNGG 2 cut(s) 84, 287
Bsc4I CCNNNNNNNGG 2 cut(s) 86, 208
Bse1I ACTGG 1 cut(s) 220
Bse3DI GCAATG 1 cut(s) 21
BseDI CCNNGG 2 cut(s) 84, 287
BseGI GGATG 1 cut(s) 171
BseLI CCNNNNNNNGG 2 cut(s) 86, 208
BseMI GCAATG 1 cut(s) 21
BseNI ACTGG 1 cut(s) 220
BseXI GCAGC 1 cut(s) 19
BshFI GGCC 1 cut(s) 64
BsiSI CCGG 2 cut(s) 202, 254
BslFI GGGAC 2 cut(s) 102, 152
BslI CCNNNNNNNGG 2 cut(s) 86, 208
BsmAI GTCTC 1 cut(s) 32
BsmBI CGTCTC 1 cut(s) 32
BsmFI GGGAC 2 cut(s) 102, 152
BsnI GGCC 1 cut(s) 64
Bsp143I GATC 2 cut(s) 173, 250
Bsp19I CCATGG 1 cut(s) 287
BspACI CCGC 1 cut(s) 151
BspANI GGCC 1 cut(s) 64
BspPI GGATC 1 cut(s) 245
BsrBI CCGCTC 1 cut(s) 153
BsrDI GCAATG 1 cut(s) 21
BsrI ACTGG 1 cut(s) 220
BssECI CCNNGG 2 cut(s) 84, 287
BssMI GATC 2 cut(s) 173, 250
BssT1I CCWWGG 2 cut(s) 84, 287
Bst4CI ACNGT 1 cut(s) 230
Bst6I CTCTTC 1 cut(s) 53
BstAPI GCANNNNNTGC 1 cut(s) 11
BstDSI CCRYGG 1 cut(s) 287
BstF5I GGATG 1 cut(s) 171
BstKTI GATC 2 cut(s) 176, 253
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 2 cut(s) 173, 250
BstMWI GCNNNNNNNGC 4 cut(s) 11, 20, 29, 41
BstSCI CCNGG 1 cut(s) 201
BstV1I GCAGC 1 cut(s) 19
BsuRI GGCC 1 cut(s) 64
BtgI CCRYGG 1 cut(s) 287
BtrI CACGTC 1 cut(s) 26
BtsCI GGATG 1 cut(s) 171
Cfr13I GGNCC 1 cut(s) 284
CseI GACGC 1 cut(s) 65
CviAII CATG 3 cut(s) 112, 180, 288
CviJI RGCY 5 cut(s) 64, 107, 124, 257, 294
CviKI_1 RGCY 5 cut(s) 64, 107, 124, 257, 294
DpnI GATC 2 cut(s) 175, 252
DpnII GATC 2 cut(s) 173, 250
DraIII CACNNNGTG 1 cut(s) 135
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
Eco130I CCWWGG 2 cut(s) 84, 287
Eco147I AGGCCT 1 cut(s) 64
Eco47I GGWCC 1 cut(s) 284
EcoT14I CCWWGG 2 cut(s) 84, 287
ErhI CCWWGG 2 cut(s) 84, 287
Esp3I CGTCTC 1 cut(s) 32
FaeI CATG 3 cut(s) 115, 183, 291
FaiI YATR 5 cut(s) 113, 144, 161, 181, 289
FaqI GGGAC 2 cut(s) 102, 152
FatI CATG 3 cut(s) 111, 179, 287
Fnu4HI GCNGC 2 cut(s) 33, 151
FokI GGATG 1 cut(s) 178
Fsp4HI GCNGC 2 cut(s) 33, 151
GluI GCNGC 2 cut(s) 33, 151
GsuI CTGGAG 1 cut(s) 237
HaeIII GGCC 1 cut(s) 64
HapII CCGG 2 cut(s) 202, 254
HgaI GACGC 1 cut(s) 65
Hin1II CATG 3 cut(s) 115, 183, 291
HindIII AAGCTT 1 cut(s) 122
HpaII CCGG 2 cut(s) 202, 254
HphI GGTGA 1 cut(s) 199
Hpy188I TCNGA 2 cut(s) 173, 250
HpyAV CCTTC 2 cut(s) 90, 271
HpyCH4III ACNGT 1 cut(s) 230
HpyCH4IV ACGT 1 cut(s) 25
HpyCH4V TGCA 2 cut(s) 14, 179
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 20, 29, 41
HpySE526I ACGT 1 cut(s) 25
Hsp92II CATG 3 cut(s) 115, 183, 291
Kzo9I GATC 2 cut(s) 173, 250
LpnPI CCDG 7 cut(s) 32, 78, 86, 201, 215, 247, 267
Lsp1109I GCAGC 1 cut(s) 19
MaeII ACGT 1 cut(s) 25
MalI GATC 2 cut(s) 175, 252
MbiI CCGCTC 1 cut(s) 153
MboI GATC 2 cut(s) 173, 250
MboII GAAGA 2 cut(s) 70, 233
MfeI CAATTG 1 cut(s) 6
MluCI AATT 1 cut(s) 6
MnlI CCTC 6 cut(s) 46, 54, 97, 177, 202, 275
MspI CCGG 2 cut(s) 202, 254
MspR9I CCNGG 1 cut(s) 203
MunI CAATTG 1 cut(s) 6
MwoI GCNNNNNNNGC 4 cut(s) 11, 20, 29, 41
NciI CCSGG 1 cut(s) 203
NcoI CCATGG 1 cut(s) 287
NdeII GATC 2 cut(s) 173, 250
NlaIII CATG 3 cut(s) 115, 183, 291
PceI AGGCCT 1 cut(s) 64
PkrI GCNGC 2 cut(s) 34, 152
PspPI GGNCC 1 cut(s) 284
SatI GCNGC 2 cut(s) 33, 151
Sau3AI GATC 2 cut(s) 173, 250
Sau96I GGNCC 1 cut(s) 284
ScrFI CCNGG 1 cut(s) 203
SetI ASST 2 cut(s) 28, 126
SinI GGWCC 1 cut(s) 284
Sse9I AATT 1 cut(s) 6
SseBI AGGCCT 1 cut(s) 64
SsiI CCGC 1 cut(s) 151
StuI AGGCCT 1 cut(s) 64
StyD4I CCNGG 1 cut(s) 201
StyI CCWWGG 2 cut(s) 84, 287
TaaI ACNGT 1 cut(s) 230
TaiI ACGT 1 cut(s) 28
TasI AATT 1 cut(s) 6
TauI GCSGC 1 cut(s) 153
TseI GCWGC 1 cut(s) 32
TspDTI ATGAA 1 cut(s) 100
VpaK11BI GGWCC 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.