Rmu_sc0002414.1_g000051

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002414.1
OG0000308
Physical Location & Seq
Forward (+)
191517 .. 192770
1254 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002414.1_g000051.1.cds

Sequence Viewer

Length: 1254 bp
atggcaattgatgcaatggcagcccgcttggcctcctccctagcgctggctgatggcaagcaaacggtggatttgcgtccatcaaaaggattgagacaacctgaagcattcatggtagggaagctactcacggcacgggaatattctcgtcgctctttccttggcctgtttcgatctgcatggagaatcaatggcagattgaatgttgaagaactcggagaagatgatagggtcttgttcacttttacatatccttcggatgtgaataaggtttggaaaggaggaccatggggatataaccgggctcctatagctttagcacagtatgacggtgtcagtccggcaagggagatcccactgaagaaatcatcatattggatgacactacaaggagtgccaccggccttcagatctgaacggattatgcgactgattgggagtaccctaggcgaattcatggaatttgatcgccccgcctttcggacccgagttttgcgcatcagggttgagatagattatgccaagcctttcctgtttcgtcgacgtttcagggtggaagatgaagtccaattcatggtgcagtttcgatatgacaagctgtttggcaggtgtggcacctgcggcctcgttacccatgttggcctcccttgttcagggctggatctggaagaagaccgtgacatacctgttggcacggtggaacaacccacggctttagtcgtgttacggggacaggaaaaccctaatgtcaatagggtaacaataaacaatcaaactctgattttcaaggctcaaatacctaatagtatacccgaagttattctacctcaatctgtgatggccatgcgtcaccatcgaagacaagtgcagattagagaattgagtgaaccaagactcaatgaagatccaatcacaggacaacgccgtagtagggaacatgatgaggtaattatctctccaaaaaaattgcgtttaagtcttgctattggaaaaaaaaatttggatgcagtgactatgggcttgttggagggacccccgaacaacaatgatcaacctaagagaaagagaggacgtcctgttggaagtgtgaacaagctgccatatggaacaacaggaaaaggaagaaaaaaggatggagaacaagaaaagacaaagagcaaaaagaccaacctgatgccgaggttgttagctgctgatgagcctgaaacaagcactaactctaaccctaaggggaaagagcaagtacttgcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

417

Amino Acids

47.19

Weight (kDa)

9.99

Isoelectric Point (pI)

46.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 597, 626
AatII GACGTC 1 cut(s) 1075
Acc16I TGCGCA 1 cut(s) 497
Acc36I ACCTGC 2 cut(s) 597, 626
AccB1I GGYRCC 1 cut(s) 614
AccB7I CCANNNNNTGG 1 cut(s) 574
AccI GTMKAC 2 cut(s) 541, 808
AciI CCGC 3 cut(s) 25, 474, 621
AclWI GGATC 3 cut(s) 346, 669, 899
AcoI YGGCCR 1 cut(s) 840
AcsI RAATTY 3 cut(s) 452, 461, 997
AcuI CTGAAG 3 cut(s) 123, 380, 391
AcyI GRCGYC 1 cut(s) 1072
AfaI GTAC 2 cut(s) 442, 1245
AfeI AGCGCT 1 cut(s) 45
AfiI CCNNNNNNNGG 7 cut(s) 46, 86, 480, 574, 653, 914, 931
AgsI TTSAA 3 cut(s) 202, 209, 787
AluBI AGCT 5 cut(s) 124, 314, 598, 1096, 1190
AluI AGCT 5 cut(s) 124, 314, 598, 1096, 1190
Alw26I GTCTC 1 cut(s) 88
AlwI GGATC 3 cut(s) 346, 669, 899
Ama87I CYCGRG 1 cut(s) 486
Aor51HI AGCGCT 1 cut(s) 45
AoxI GGCC 6 cut(s) 30, 163, 402, 622, 640, 840
ApeKI GCWGC 3 cut(s) 20, 1096, 1190
ApoI RAATTY 3 cut(s) 452, 461, 997
ArsI GACNNNNNNTTYG 4 cut(s) 475, 507, 584, 616
Asp700I GAANNNNTTC 1 cut(s) 819
AspA2I CCTAGG 1 cut(s) 445
AspLEI GCGC 2 cut(s) 46, 498
AspS9I GGNCC 3 cut(s) 284, 483, 1031
AsuC2I CCSGG 1 cut(s) 302
AsuHPI GGTGA 1 cut(s) 842
AvaI CYCGRG 1 cut(s) 486
AvaII GGWCC 3 cut(s) 284, 483, 1031
AvrII CCTAGG 1 cut(s) 445
AxyI CCTNAGG 1 cut(s) 1227
BalI TGGCCA 1 cut(s) 842
BanI GGYRCC 1 cut(s) 614
BanII GRGCYC 1 cut(s) 307
BarI GAAGNNNNNNTAC 2 cut(s) 807, 839
BbsI GAAGAC 2 cut(s) 678, 865
BbvI GCAGC 3 cut(s) 32, 1083, 1177
BccI CCATC 5 cut(s) 47, 88, 832, 861, 1127
BceAI ACGGC 3 cut(s) 147, 726, 909
BclI TGATCA 1 cut(s) 1048
BcnI CCSGG 1 cut(s) 302
BcoDI GTCTC 1 cut(s) 88
BfaI CTAG 2 cut(s) 41, 446
BfmI CTRYAG 1 cut(s) 309
BfoI RGCGCY 1 cut(s) 47
BfuAI ACCTGC 2 cut(s) 597, 626
BglI GCCNNNNNGGC 1 cut(s) 29
BglII AGATCT 1 cut(s) 410
BisI GCNGC 4 cut(s) 21, 622, 1097, 1191
BlnI CCTAGG 1 cut(s) 445
BlsI GCNGC 4 cut(s) 22, 623, 1098, 1192
BmcAI AGTACT 1 cut(s) 1245
Bme1390I CCNGG 1 cut(s) 302
Bme18I GGWCC 3 cut(s) 284, 483, 1031
BmeT110I CYCGRG 1 cut(s) 486
BmgT120I GGNCC 3 cut(s) 284, 483, 1031
BmiI GGNNCC 5 cut(s) 306, 485, 616, 1032, 1033
BmrFI CCNGG 1 cut(s) 302
BmsI GCATC 3 cut(s) 507, 994, 1164
BpiI GAAGAC 2 cut(s) 678, 865
BpuMI CCSGG 1 cut(s) 302
BsaHI GRCGYC 1 cut(s) 1072
BsaJI CCNNGG 5 cut(s) 160, 287, 445, 708, 1178
Bsc4I CCNNNNNNNGG 7 cut(s) 46, 86, 480, 574, 653, 914, 931
Bse118I RCCGGY 1 cut(s) 400
Bse21I CCTNAGG 1 cut(s) 1227
Bse3DI GCAATG 1 cut(s) 21
BseDI CCNNGG 5 cut(s) 160, 287, 445, 708, 1178
BseGI GGATG 4 cut(s) 265, 384, 1009, 1138
BseLI CCNNNNNNNGG 7 cut(s) 46, 86, 480, 574, 653, 914, 931
BseMI GCAATG 1 cut(s) 21
BseRI GAGGAG 1 cut(s) 25
BseXI GCAGC 3 cut(s) 32, 1083, 1177
BsgI GTGCAG 2 cut(s) 599, 887
BshFI GGCC 6 cut(s) 32, 165, 404, 624, 642, 842
BshNI GGYRCC 1 cut(s) 614
BsiHKCI CYCGRG 1 cut(s) 486
BsiSI CCGG 3 cut(s) 301, 341, 401
BslFI GGGAC 2 cut(s) 744, 1044
BslI CCNNNNNNNGG 7 cut(s) 46, 86, 480, 574, 653, 914, 931
BsmAI GTCTC 1 cut(s) 88
BsmFI GGGAC 2 cut(s) 744, 1044
BsmI GAATGC 1 cut(s) 107
BsnI GGCC 6 cut(s) 32, 165, 404, 624, 642, 842
BsoBI CYCGRG 1 cut(s) 486
Bsp1286I GDGCHC 1 cut(s) 307
Bsp143I GATC 7 cut(s) 173, 351, 410, 466, 661, 904, 1048
Bsp19I CCATGG 1 cut(s) 287
BspACI CCGC 3 cut(s) 25, 474, 621
BspANI GGCC 6 cut(s) 32, 165, 404, 624, 642, 842
BspLI GGNNCC 5 cut(s) 306, 485, 616, 1032, 1033
BspMI ACCTGC 2 cut(s) 597, 626
BspPI GGATC 3 cut(s) 346, 669, 899
BspT107I GGYRCC 1 cut(s) 614
BsrDI GCAATG 1 cut(s) 21
BsrFI RCCGGY 1 cut(s) 400
BssAI RCCGGY 1 cut(s) 400
BssECI CCNNGG 5 cut(s) 160, 287, 445, 708, 1178
BssMI GATC 7 cut(s) 173, 351, 410, 466, 661, 904, 1048
BssNAI GTATAC 1 cut(s) 809
BssNI GRCGYC 1 cut(s) 1072
BssT1I CCWWGG 3 cut(s) 160, 287, 445
Bst1107I GTATAC 1 cut(s) 809
Bst4CI ACNGT 5 cut(s) 67, 324, 332, 677, 697
BstACI GRCGYC 1 cut(s) 1072
BstAPI GCANNNNNTGC 1 cut(s) 11
BstC8I GCNNGC 3 cut(s) 25, 48, 59
BstDEI CTNAG 2 cut(s) 1056, 1227
BstDSI CCRYGG 2 cut(s) 287, 708
BstENI CCTNNNNNAGG 1 cut(s) 651
BstF5I GGATG 4 cut(s) 265, 384, 1009, 1138
BstH2I RGCGCY 1 cut(s) 47
BstHHI GCGC 2 cut(s) 46, 498
BstKTI GATC 7 cut(s) 176, 354, 413, 469, 664, 907, 1051
BstMAI GTCTC 1 cut(s) 88
BstMBI GATC 7 cut(s) 173, 351, 410, 466, 661, 904, 1048
BstMWI GCNNNNNNNGC 6 cut(s) 11, 20, 29, 311, 612, 621
BstSCI CCNGG 1 cut(s) 300
BstSFI CTRYAG 1 cut(s) 309
BstV1I GCAGC 3 cut(s) 32, 1083, 1177
BstV2I GAAGAC 2 cut(s) 678, 865
BstX2I RGATCY 4 cut(s) 351, 410, 661, 904
BstYI RGATCY 4 cut(s) 351, 410, 661, 904
BstZ17I GTATAC 1 cut(s) 809
Bsu36I CCTNAGG 1 cut(s) 1227
BsuRI GGCC 6 cut(s) 32, 165, 404, 624, 642, 842
BtgI CCRYGG 2 cut(s) 287, 708
BtsCI GGATG 4 cut(s) 265, 384, 1009, 1138
BtsI GCAGTG 1 cut(s) 1014
BtsIMutI CAGTG 2 cut(s) 356, 1014
BveI ACCTGC 2 cut(s) 597, 626
Cac8I GCNNGC 3 cut(s) 25, 48, 59
CfoI GCGC 2 cut(s) 46, 498
Cfr10I RCCGGY 1 cut(s) 400
Cfr13I GGNCC 3 cut(s) 284, 483, 1031
CseI GACGC 2 cut(s) 65, 836
Csp6I GTAC 2 cut(s) 441, 1244
CviAII CATG 8 cut(s) 112, 180, 288, 457, 574, 635, 844, 938
CviQI GTAC 2 cut(s) 441, 1244
DdeI CTNAG 2 cut(s) 1056, 1227
DpnI GATC 7 cut(s) 175, 353, 412, 468, 663, 906, 1050
DpnII GATC 7 cut(s) 173, 351, 410, 466, 661, 904, 1048
EaeI YGGCCR 1 cut(s) 840
Eco130I CCWWGG 3 cut(s) 160, 287, 445
Eco24I GRGCYC 1 cut(s) 307
Eco47I GGWCC 3 cut(s) 284, 483, 1031
Eco47III AGCGCT 1 cut(s) 45
Eco57I CTGAAG 3 cut(s) 123, 380, 391
Eco81I CCTNAGG 1 cut(s) 1227
Eco88I CYCGRG 1 cut(s) 486
EcoNI CCTNNNNNAGG 1 cut(s) 651
EcoO109I RGGNCCY 1 cut(s) 1031
EcoRI GAATTC 1 cut(s) 452
EcoT14I CCWWGG 3 cut(s) 160, 287, 445
EcoT38I GRGCYC 1 cut(s) 307
ErhI CCWWGG 3 cut(s) 160, 287, 445
FaeI CATG 8 cut(s) 115, 183, 291, 460, 577, 638, 847, 941
FaqI GGGAC 2 cut(s) 744, 1044
FatI CATG 8 cut(s) 111, 179, 287, 456, 573, 634, 843, 937
FauI CCCGC 2 cut(s) 32, 481
FauNDI CATATG 1 cut(s) 1102
FbaI TGATCA 1 cut(s) 1048
FblI GTMKAC 2 cut(s) 541, 808
Fnu4HI GCNGC 4 cut(s) 21, 622, 1097, 1191
FokI GGATG 4 cut(s) 272, 391, 1016, 1145
FriOI GRGCYC 1 cut(s) 307
Fsp4HI GCNGC 4 cut(s) 21, 622, 1097, 1191
FspBI CTAG 2 cut(s) 41, 446
FspI TGCGCA 1 cut(s) 497
GlaI GCGC 2 cut(s) 45, 497
GluI GCNGC 4 cut(s) 21, 622, 1097, 1191
HaeII RGCGCY 1 cut(s) 47
HaeIII GGCC 6 cut(s) 32, 165, 404, 624, 642, 842
HapII CCGG 3 cut(s) 301, 341, 401
HgaI GACGC 2 cut(s) 65, 836
HhaI GCGC 2 cut(s) 46, 498
Hin1I GRCGYC 1 cut(s) 1072
Hin1II CATG 8 cut(s) 115, 183, 291, 460, 577, 638, 847, 941
Hin6I GCGC 2 cut(s) 44, 496
HinP1I GCGC 2 cut(s) 44, 496
HincII GTYRAC 1 cut(s) 542
HindII GTYRAC 1 cut(s) 542
HinfI GANTC 2 cut(s) 186, 894
HpaII CCGG 3 cut(s) 301, 341, 401
HphI GGTGA 1 cut(s) 842
Hpy166II GTNNAC 5 cut(s) 240, 542, 809, 887, 1090
Hpy188I TCNGA 6 cut(s) 218, 259, 410, 415, 483, 780
Hpy188III TCNNGA 1 cut(s) 665
Hpy8I GTNNAC 5 cut(s) 240, 542, 809, 887, 1090
Hpy99I CGWCG 3 cut(s) 153, 543, 546
HpyAV CCTTC 2 cut(s) 264, 415
HpyCH4III ACNGT 5 cut(s) 67, 324, 332, 677, 697
HpyCH4IV ACGT 2 cut(s) 544, 1072
HpyCH4V TGCA 5 cut(s) 14, 179, 580, 868, 1007
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 20, 29, 311, 612, 621
HpyF3I CTNAG 2 cut(s) 1056, 1227
HpySE526I ACGT 2 cut(s) 544, 1072
Hsp92I GRCGYC 1 cut(s) 1072
Hsp92II CATG 8 cut(s) 115, 183, 291, 460, 577, 638, 847, 941
HspAI GCGC 2 cut(s) 44, 496
KflI GGGWCCC 1 cut(s) 1031
Ksp22I TGATCA 1 cut(s) 1048
Kzo9I GATC 7 cut(s) 173, 351, 410, 466, 661, 904, 1048
LmnI GCTCC 1 cut(s) 310
Lsp1109I GCAGC 3 cut(s) 32, 1083, 1177
LweI GCATC 3 cut(s) 507, 994, 1164
MaeI CTAG 2 cut(s) 41, 446
MaeII ACGT 2 cut(s) 544, 1072
MaeIII GTNAC 6 cut(s) 628, 677, 723, 757, 848, 1009
MalI GATC 7 cut(s) 175, 353, 412, 468, 663, 906, 1050
MboI GATC 7 cut(s) 173, 351, 410, 466, 661, 904, 1048
MboII GAAGA 9 cut(s) 221, 233, 373, 569, 680, 683, 870, 914, 1134
MfeI CAATTG 1 cut(s) 6
MflI RGATCY 4 cut(s) 351, 410, 661, 904
MhlI GDGCHC 1 cut(s) 307
MlsI TGGCCA 1 cut(s) 842
MluCI AATT 8 cut(s) 6, 452, 461, 569, 878, 948, 965, 997
MluNI TGGCCA 1 cut(s) 842
MlyI GAGTC 1 cut(s) 888
MmeI TCCRAC 2 cut(s) 1005, 1060
Mox20I TGGCCA 1 cut(s) 842
MroXI GAANNNNTTC 1 cut(s) 819
MscI TGGCCA 1 cut(s) 842
MseI TTAA 2 cut(s) 974, 1252
Msp20I TGGCCA 1 cut(s) 842
MspI CCGG 3 cut(s) 301, 341, 401
MspR9I CCNGG 1 cut(s) 302
MunI CAATTG 1 cut(s) 6
Mva1269I GAATGC 1 cut(s) 107
MwoI GCNNNNNNNGC 6 cut(s) 11, 20, 29, 311, 612, 621
NciI CCSGG 1 cut(s) 302
NcoI CCATGG 1 cut(s) 287
NdeI CATATG 1 cut(s) 1102
NdeII GATC 7 cut(s) 173, 351, 410, 466, 661, 904, 1048
NlaIII CATG 8 cut(s) 115, 183, 291, 460, 577, 638, 847, 941
NlaIV GGNNCC 5 cut(s) 306, 485, 616, 1032, 1033
NmeAIII GCCGAG 1 cut(s) 1203
NmuCI GTSAC 3 cut(s) 677, 848, 1009
NsbI TGCGCA 1 cut(s) 497
PaqCI CACCTGC 2 cut(s) 597, 626
PcsI WCGNNNNNNNCGW 1 cut(s) 424
PctI GAATGC 1 cut(s) 107
PdmI GAANNNNTTC 1 cut(s) 819
PfeI GAWTC 1 cut(s) 186
PflFI GACNNNGTC 1 cut(s) 332
PflMI CCANNNNNTGG 1 cut(s) 574
PkrI GCNGC 4 cut(s) 22, 623, 1098, 1192
PleI GAGTC 1 cut(s) 888
PpsI GAGTC 1 cut(s) 888
PpuMI RGGWCCY 1 cut(s) 1031
Psp5II RGGWCCY 1 cut(s) 1031
PspN4I GGNNCC 5 cut(s) 306, 485, 616, 1032, 1033
PspPI GGNCC 3 cut(s) 284, 483, 1031
PspPPI RGGWCCY 1 cut(s) 1031
PsuI RGATCY 4 cut(s) 351, 410, 661, 904
PsyI GACNNNGTC 1 cut(s) 332
RsaI GTAC 2 cut(s) 442, 1245
RsaNI GTAC 2 cut(s) 441, 1244
SalI GTCGAC 1 cut(s) 540
SaqAI TTAA 2 cut(s) 974, 1252
SatI GCNGC 4 cut(s) 21, 622, 1097, 1191
Sau3AI GATC 7 cut(s) 173, 351, 410, 466, 661, 904, 1048
Sau96I GGNCC 3 cut(s) 284, 483, 1031
ScaI AGTACT 1 cut(s) 1245
SchI GAGTC 1 cut(s) 888
ScrFI CCNGG 1 cut(s) 302
SduI GDGCHC 1 cut(s) 307
SfaNI GCATC 3 cut(s) 507, 994, 1164
SfcI CTRYAG 1 cut(s) 309
SgrDI CGTCGACG 1 cut(s) 540
SinI GGWCC 3 cut(s) 284, 483, 1031
Sse9I AATT 8 cut(s) 6, 452, 461, 569, 878, 948, 965, 997
SsiI CCGC 3 cut(s) 25, 474, 621
SspI AATATT 1 cut(s) 143
SspMI CTAG 2 cut(s) 41, 446
StyD4I CCNGG 1 cut(s) 300
StyI CCWWGG 3 cut(s) 160, 287, 445
TaaI ACNGT 5 cut(s) 67, 324, 332, 677, 697
TaiI ACGT 2 cut(s) 547, 1075
TaqI TCGA 4 cut(s) 172, 541, 586, 856
TasI AATT 8 cut(s) 6, 452, 461, 569, 878, 948, 965, 997
TatI WGTACW 1 cut(s) 1243
TauI GCSGC 1 cut(s) 624
TfiI GAWTC 1 cut(s) 186
Tru1I TTAA 2 cut(s) 974, 1252
Tru9I TTAA 2 cut(s) 974, 1252
TscAI CASTG 2 cut(s) 363, 1014
TseFI GTSAC 3 cut(s) 677, 848, 1009
TseI GCWGC 3 cut(s) 20, 1096, 1190
Tsp45I GTSAC 3 cut(s) 677, 848, 1009
TspDTI ATGAA 5 cut(s) 100, 445, 562, 576, 915
TspGWI ACGGA 1 cut(s) 433
TspRI CASTG 2 cut(s) 363, 1014
Tth111I GACNNNGTC 1 cut(s) 332
Van91I CCANNNNNTGG 1 cut(s) 574
VpaK11BI GGWCC 3 cut(s) 284, 483, 1031
XagI CCTNNNNNAGG 1 cut(s) 651
XapI RAATTY 3 cut(s) 452, 461, 997
XmaJI CCTAGG 1 cut(s) 445
XmiI GTMKAC 2 cut(s) 541, 808
XmnI GAANNNNTTC 1 cut(s) 819
XspI CTAG 2 cut(s) 41, 446
ZraI GACGTC 1 cut(s) 1073
ZrmI AGTACT 1 cut(s) 1245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.