Rmu_sc0041433.1_g000001

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0041433.1
OG0000308
Physical Location & Seq
Reverse (-)
1 .. 706
706 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0041433.1_g000001.1.cds

Sequence Viewer

Length: 427 bp
acagggtcttgttcaccttcactgacccatctgatgtggacagagtgtggaaaggaggaccctggggatacaatagagctcagatagccctagcgccatatgatggcgtcactccggcagcagacgtgcccctgaagaaatcatcctactggatgaccctgcaaggagtaccgccggcgttccggtctgagcgcatcatgcgtttgatcagaaggccggaactggttgaagaaagtgacgcaccggtgggggtggtggtacaacccacggctctgacggtgctacgaggtcatgcagcaccaaaccctattgctgacaggatcgtgattaacaatcaaaccttgatttttaaggcccagataccaaagagcattgataggagcattttaatgcgacgttttaactgcattttccctacatttcttac
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283

Protein Analysis

142

Amino Acids

15.96

Weight (kDa)

9.99

Isoelectric Point (pI)

47.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 103
AciI CCGC 1 cut(s) 172
AclWI GGATC 1 cut(s) 328
AcuI CTGAAG 1 cut(s) 154
AcyI GRCGYC 1 cut(s) 107
AfaI GTAC 2 cut(s) 170, 260
AfiI CCNNNNNNNGG 1 cut(s) 103
AgeI ACCGGT 1 cut(s) 243
AgsI TTSAA 1 cut(s) 229
AjiI CACGTC 1 cut(s) 126
AjnI CCWGG 1 cut(s) 61
AluBI AGCT 1 cut(s) 79
AluI AGCT 1 cut(s) 79
Alw21I GWGCWC 1 cut(s) 81
AlwI GGATC 1 cut(s) 328
AoxI GGCC 2 cut(s) 214, 353
ApeKI GCWGC 2 cut(s) 118, 295
AsiGI ACCGGT 1 cut(s) 243
AspLEI GCGC 2 cut(s) 96, 194
AspS9I GGNCC 2 cut(s) 58, 354
AsuHPI GGTGA 1 cut(s) 6
AvaII GGWCC 1 cut(s) 58
BaeGI GKGCMC 1 cut(s) 131
BanII GRGCYC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 81
BbvI GCAGC 2 cut(s) 130, 307
BccI CCATC 2 cut(s) 36, 97
BceAI ACGGC 1 cut(s) 284
BciT130I CCWGG 1 cut(s) 63
BciVI GTATCC 1 cut(s) 61
BclI TGATCA 1 cut(s) 206
BfaI CTAG 1 cut(s) 91
BfoI RGCGCY 1 cut(s) 97
BfuI GTATCC 1 cut(s) 61
BisI GCNGC 2 cut(s) 119, 296
BlsI GCNGC 2 cut(s) 120, 297
Bme1390I CCNGG 1 cut(s) 63
Bme18I GGWCC 1 cut(s) 58
BmgBI CACGTC 1 cut(s) 126
BmgT120I GGNCC 2 cut(s) 58, 354
BmiI GGNNCC 1 cut(s) 60
BmrFI CCNGG 1 cut(s) 63
BmsI GCATC 1 cut(s) 203
BsaHI GRCGYC 1 cut(s) 107
BsaJI CCNNGG 3 cut(s) 61, 62, 266
BsaWI WCCGGW 2 cut(s) 182, 243
Bsc4I CCNNNNNNNGG 1 cut(s) 103
Bse118I RCCGGY 2 cut(s) 174, 243
Bse1I ACTGG 2 cut(s) 154, 227
BseBI CCWGG 1 cut(s) 63
BseDI CCNNGG 3 cut(s) 61, 62, 266
BseGI GGATG 2 cut(s) 142, 158
BseLI CCNNNNNNNGG 1 cut(s) 103
BseMII CTCAG 2 cut(s) 94, 179
BseNI ACTGG 2 cut(s) 154, 227
BseSI GKGCMC 1 cut(s) 131
BseXI GCAGC 2 cut(s) 130, 307
BshFI GGCC 2 cut(s) 216, 355
BshTI ACCGGT 1 cut(s) 243
BsiHKAI GWGCWC 1 cut(s) 81
BsiSI CCGG 5 cut(s) 115, 175, 183, 217, 244
BslI CCNNNNNNNGG 1 cut(s) 103
BsnI GGCC 2 cut(s) 216, 355
Bsp1286I GDGCHC 2 cut(s) 81, 131
Bsp143I GATC 2 cut(s) 206, 320
BspACI CCGC 1 cut(s) 172
BspANI GGCC 2 cut(s) 216, 355
BspCNI CTCAG 2 cut(s) 93, 180
BspLI GGNNCC 1 cut(s) 60
BspPI GGATC 1 cut(s) 328
BsrFI RCCGGY 2 cut(s) 174, 243
BsrI ACTGG 2 cut(s) 154, 227
BssAI RCCGGY 2 cut(s) 174, 243
BssECI CCNNGG 3 cut(s) 61, 62, 266
BssMI GATC 2 cut(s) 206, 320
BssNI GRCGYC 1 cut(s) 107
Bst2UI CCWGG 1 cut(s) 63
Bst4CI ACNGT 1 cut(s) 279
BstACI GRCGYC 1 cut(s) 107
BstC8I GCNNGC 1 cut(s) 176
BstDEI CTNAG 2 cut(s) 80, 188
BstDSI CCRYGG 1 cut(s) 266
BstF5I GGATG 2 cut(s) 142, 158
BstH2I RGCGCY 1 cut(s) 97
BstHHI GCGC 2 cut(s) 96, 194
BstKTI GATC 2 cut(s) 209, 323
BstMBI GATC 2 cut(s) 206, 320
BstMWI GCNNNNNNNGC 2 cut(s) 85, 198
BstNI CCWGG 1 cut(s) 63
BstSCI CCNGG 1 cut(s) 61
BstSLI GKGCMC 1 cut(s) 131
BstV1I GCAGC 2 cut(s) 130, 307
BsuI GTATCC 1 cut(s) 61
BsuRI GGCC 2 cut(s) 216, 355
BtgI CCRYGG 1 cut(s) 266
BtrI CACGTC 1 cut(s) 126
BtsCI GGATG 2 cut(s) 142, 158
BtsIMutI CAGTG 1 cut(s) 20
Cac8I GCNNGC 1 cut(s) 176
CfoI GCGC 2 cut(s) 96, 194
Cfr10I RCCGGY 2 cut(s) 174, 243
Cfr13I GGNCC 2 cut(s) 58, 354
CseI GACGC 2 cut(s) 96, 247
Csp6I GTAC 2 cut(s) 169, 259
CspAI ACCGGT 1 cut(s) 243
CviAII CATG 2 cut(s) 198, 292
CviJI RGCY 5 cut(s) 79, 88, 216, 271, 355
CviKI_1 RGCY 5 cut(s) 79, 88, 216, 271, 355
CviQI GTAC 2 cut(s) 169, 259
DdeI CTNAG 2 cut(s) 80, 188
DpnI GATC 2 cut(s) 208, 322
DpnII GATC 2 cut(s) 206, 320
Ecl136II GAGCTC 1 cut(s) 79
Eco24I GRGCYC 1 cut(s) 81
Eco47I GGWCC 1 cut(s) 58
Eco53kI GAGCTC 1 cut(s) 79
Eco57I CTGAAG 1 cut(s) 154
EcoICRI GAGCTC 1 cut(s) 79
EcoO109I RGGNCCY 1 cut(s) 58
EcoRII CCWGG 1 cut(s) 61
EcoT38I GRGCYC 1 cut(s) 81
FaeI CATG 2 cut(s) 201, 295
FaiI YATR 4 cut(s) 99, 101, 199, 293
FatI CATG 2 cut(s) 197, 291
FauNDI CATATG 1 cut(s) 99
FbaI TGATCA 1 cut(s) 206
Fnu4HI GCNGC 2 cut(s) 119, 296
FokI GGATG 2 cut(s) 129, 165
FriOI GRGCYC 1 cut(s) 81
Fsp4HI GCNGC 2 cut(s) 119, 296
FspBI CTAG 1 cut(s) 91
GlaI GCGC 2 cut(s) 95, 193
GluI GCNGC 2 cut(s) 119, 296
HaeII RGCGCY 1 cut(s) 97
HaeIII GGCC 2 cut(s) 216, 355
HapII CCGG 5 cut(s) 115, 175, 183, 217, 244
HgaI GACGC 2 cut(s) 96, 247
HhaI GCGC 2 cut(s) 96, 194
Hin1I GRCGYC 1 cut(s) 107
Hin1II CATG 2 cut(s) 201, 295
Hin6I GCGC 2 cut(s) 94, 192
HinP1I GCGC 2 cut(s) 94, 192
HpaII CCGG 5 cut(s) 115, 175, 183, 217, 244
HphI GGTGA 1 cut(s) 6
Hpy166II GTNNAC 2 cut(s) 14, 39
Hpy188I TCNGA 5 cut(s) 33, 83, 189, 211, 275
Hpy188III TCNNGA 1 cut(s) 324
Hpy8I GTNNAC 2 cut(s) 14, 39
Hpy99I CGWCG 1 cut(s) 398
HpyAV CCTTC 2 cut(s) 27, 206
HpyCH4III ACNGT 1 cut(s) 279
HpyCH4IV ACGT 2 cut(s) 125, 396
HpyCH4V TGCA 3 cut(s) 162, 295, 407
HpyF10VI GCNNNNNNNGC 2 cut(s) 85, 198
HpyF3I CTNAG 2 cut(s) 80, 188
HpySE526I ACGT 2 cut(s) 125, 396
Hsp92I GRCGYC 1 cut(s) 107
Hsp92II CATG 2 cut(s) 201, 295
HspAI GCGC 2 cut(s) 94, 192
KroI GCCGGC 1 cut(s) 174
KroNI GCCGGC 1 cut(s) 176
Ksp22I TGATCA 1 cut(s) 206
Kzo9I GATC 2 cut(s) 206, 320
LmnI GCTCC 1 cut(s) 380
Lsp1109I GCAGC 2 cut(s) 130, 307
LweI GCATC 1 cut(s) 203
MaeI CTAG 1 cut(s) 91
MaeII ACGT 2 cut(s) 125, 396
MaeIII GTNAC 2 cut(s) 108, 235
MalI GATC 2 cut(s) 208, 322
MboI GATC 2 cut(s) 206, 320
MboII GAAGA 2 cut(s) 147, 241
MhlI GDGCHC 2 cut(s) 81, 131
MnlI CCTC 2 cut(s) 49, 280
MreI CGCCGGCG 1 cut(s) 174
MroNI GCCGGC 1 cut(s) 174
MseI TTAA 4 cut(s) 329, 350, 388, 401
MslI CAYNNNNRTG 1 cut(s) 388
MspI CCGG 5 cut(s) 115, 175, 183, 217, 244
MspR9I CCNGG 1 cut(s) 63
MvaI CCWGG 1 cut(s) 63
MwoI GCNNNNNNNGC 2 cut(s) 85, 198
NaeI GCCGGC 1 cut(s) 176
NdeI CATATG 1 cut(s) 99
NdeII GATC 2 cut(s) 206, 320
NgoMIV GCCGGC 1 cut(s) 174
NlaIII CATG 2 cut(s) 201, 295
NlaIV GGNNCC 1 cut(s) 60
NmuCI GTSAC 2 cut(s) 108, 235
PasI CCCWGGG 1 cut(s) 62
PdiI GCCGGC 1 cut(s) 176
PflMI CCANNNNNTGG 1 cut(s) 103
PinAI ACCGGT 1 cut(s) 243
PkrI GCNGC 2 cut(s) 120, 297
PpuMI RGGWCCY 1 cut(s) 58
Psp124BI GAGCTC 1 cut(s) 81
Psp5II RGGWCCY 1 cut(s) 58
Psp6I CCWGG 1 cut(s) 61
PspGI CCWGG 1 cut(s) 61
PspN4I GGNNCC 1 cut(s) 60
PspPI GGNCC 2 cut(s) 58, 354
PspPPI RGGWCCY 1 cut(s) 58
RsaI GTAC 2 cut(s) 170, 260
RsaNI GTAC 2 cut(s) 169, 259
RseI CAYNNNNRTG 1 cut(s) 388
SacI GAGCTC 1 cut(s) 81
SaqAI TTAA 4 cut(s) 329, 350, 388, 401
SatI GCNGC 2 cut(s) 119, 296
Sau3AI GATC 2 cut(s) 206, 320
Sau96I GGNCC 2 cut(s) 58, 354
ScrFI CCNGG 1 cut(s) 63
SduI GDGCHC 2 cut(s) 81, 131
SetI ASST 6 cut(s) 19, 81, 128, 291, 343, 399
SfaNI GCATC 1 cut(s) 203
SgrAI CRCCGGYG 2 cut(s) 174, 243
SinI GGWCC 1 cut(s) 58
SmiMI CAYNNNNRTG 1 cut(s) 388
SsiI CCGC 1 cut(s) 172
SspMI CTAG 1 cut(s) 91
SstI GAGCTC 1 cut(s) 81
StyD4I CCNGG 1 cut(s) 61
TaaI ACNGT 1 cut(s) 279
TaiI ACGT 2 cut(s) 128, 399
Tru1I TTAA 4 cut(s) 329, 350, 388, 401
Tru9I TTAA 4 cut(s) 329, 350, 388, 401
TscAI CASTG 1 cut(s) 27
TseFI GTSAC 2 cut(s) 108, 235
TseI GCWGC 2 cut(s) 118, 295
Tsp45I GTSAC 2 cut(s) 108, 235
TspRI CASTG 1 cut(s) 27
Van91I CCANNNNNTGG 1 cut(s) 103
VpaK11BI GGWCC 1 cut(s) 58
XspI CTAG 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.