Rh6AG427300

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
61926700 .. 61930201
3502 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG427300.1

Sequence Viewer

Length: 225 bp
ATGGCATATGCCTCTTTTCCTTGTGCAACCAAAATCATTGTGGATTACAGGCTACAGAGTATCGATTCAGAATCCCATGTGCTCACGTGTCCAGATCGCTGGGCACCCACGTCGCAGGTCAAGACAAAAGAGGTTCAAGGGTTGGTGACTGGATATTGGCTGGAAAGGTGTAGGTCTTCAGTCGGACGGACGGATTTAGACATGTTCCATTGTAACGCTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

8.36

Weight (kDa)

6.69

Isoelectric Point (pI)

42.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 106
AccB1I GGYRCC 1 cut(s) 103
AcuI CTGAAG 1 cut(s) 162
AcvI CACGTG 1 cut(s) 87
AflIII ACRYGT 2 cut(s) 86, 201
AgsI TTSAA 1 cut(s) 137
AjiI CACGTC 1 cut(s) 111
Alw21I GWGCWC 1 cut(s) 84
ApeKI GCWGC 1 cut(s) 218
AsuHPI GGTGA 1 cut(s) 157
BaeGI GKGCMC 1 cut(s) 106
BanI GGYRCC 1 cut(s) 103
BbrPI CACGTG 1 cut(s) 87
BbsI GAAGAC 1 cut(s) 168
Bbv12I GWGCWC 1 cut(s) 84
BbvI GCAGC 1 cut(s) 205
BcgI CGANNNNNNTGC 2 cut(s) 93, 127
BfmI CTRYAG 1 cut(s) 53
BfuAI ACCTGC 1 cut(s) 106
BisI GCNGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 220
BmgBI CACGTC 1 cut(s) 111
BmiI GGNNCC 1 cut(s) 105
BpiI GAAGAC 1 cut(s) 168
Bsa29I ATCGAT 1 cut(s) 63
BsaAI YACGTR 1 cut(s) 87
Bse1I ACTGG 1 cut(s) 154
BseCI ATCGAT 1 cut(s) 63
BseNI ACTGG 1 cut(s) 154
BseSI GKGCMC 1 cut(s) 106
BseXI GCAGC 1 cut(s) 205
BseYI CCCAGC 1 cut(s) 99
BshNI GGYRCC 1 cut(s) 103
BshVI ATCGAT 1 cut(s) 63
BsiHKAI GWGCWC 1 cut(s) 84
Bsp1286I GDGCHC 2 cut(s) 84, 106
Bsp143I GATC 1 cut(s) 94
BspDI ATCGAT 1 cut(s) 63
BspLI GGNNCC 1 cut(s) 105
BspMI ACCTGC 1 cut(s) 106
BspT107I GGYRCC 1 cut(s) 103
BsrI ACTGG 1 cut(s) 154
BssMI GATC 1 cut(s) 94
BstBAI YACGTR 1 cut(s) 87
BstKTI GATC 1 cut(s) 97
BstMBI GATC 1 cut(s) 94
BstNSI RCATGY 1 cut(s) 205
BstSFI CTRYAG 1 cut(s) 53
BstSLI GKGCMC 1 cut(s) 106
BstV1I GCAGC 1 cut(s) 205
BstV2I GAAGAC 1 cut(s) 168
BstXI CCANNNNNNTGG 1 cut(s) 99
Bsu15I ATCGAT 1 cut(s) 63
BsuTUI ATCGAT 1 cut(s) 63
BtrI CACGTC 1 cut(s) 111
BveI ACCTGC 1 cut(s) 106
ClaI ATCGAT 1 cut(s) 63
CviAII CATG 3 cut(s) 77, 202, 222
CviJI RGCY 2 cut(s) 52, 160
CviKI_1 RGCY 2 cut(s) 52, 160
DpnI GATC 1 cut(s) 96
DpnII GATC 1 cut(s) 94
Eco57I CTGAAG 1 cut(s) 162
Eco72I CACGTG 1 cut(s) 87
FaeI CATG 3 cut(s) 80, 205, 225
FaiI YATR 5 cut(s) 7, 9, 78, 203, 223
FatI CATG 3 cut(s) 76, 201, 221
FauNDI CATATG 1 cut(s) 7
Fnu4HI GCNGC 1 cut(s) 219
Fsp4HI GCNGC 1 cut(s) 219
GluI GCNGC 1 cut(s) 219
GsaI CCCAGC 1 cut(s) 103
Hin1II CATG 3 cut(s) 80, 205, 225
HinfI GANTC 2 cut(s) 65, 71
HphI GGTGA 1 cut(s) 157
Hpy188I TCNGA 2 cut(s) 70, 185
Hpy188III TCNNGA 2 cut(s) 92, 121
Hpy99I CGWCG 1 cut(s) 115
HpyCH4IV ACGT 2 cut(s) 86, 110
HpyCH4V TGCA 2 cut(s) 26, 221
HpySE526I ACGT 2 cut(s) 86, 110
Hsp92II CATG 3 cut(s) 80, 205, 225
Kzo9I GATC 1 cut(s) 94
LpnPI CCDG 6 cut(s) 34, 85, 101, 105, 135, 146
Lsp1109I GCAGC 1 cut(s) 205
MaeII ACGT 2 cut(s) 86, 110
MaeIII GTNAC 2 cut(s) 145, 212
MalI GATC 1 cut(s) 96
MboI GATC 1 cut(s) 94
MboII GAAGA 1 cut(s) 168
MhlI GDGCHC 2 cut(s) 84, 106
MmeI TCCRAC 1 cut(s) 163
MnlI CCTC 2 cut(s) 22, 124
NdeI CATATG 1 cut(s) 7
NdeII GATC 1 cut(s) 94
NlaIII CATG 3 cut(s) 80, 205, 225
NlaIV GGNNCC 1 cut(s) 105
NmuCI GTSAC 1 cut(s) 145
NspI RCATGY 1 cut(s) 205
PciI ACATGT 1 cut(s) 201
PfeI GAWTC 2 cut(s) 65, 71
PkrI GCNGC 1 cut(s) 220
PmaCI CACGTG 1 cut(s) 87
PmlI CACGTG 1 cut(s) 87
Ppu21I YACGTR 1 cut(s) 87
PscI ACATGT 1 cut(s) 201
PspCI CACGTG 1 cut(s) 87
PspFI CCCAGC 1 cut(s) 99
PspN4I GGNNCC 1 cut(s) 105
SatI GCNGC 1 cut(s) 219
Sau3AI GATC 1 cut(s) 94
SduI GDGCHC 2 cut(s) 84, 106
SetI ASST 6 cut(s) 89, 113, 120, 135, 170, 176
SfcI CTRYAG 1 cut(s) 53
TaiI ACGT 2 cut(s) 89, 113
TaqI TCGA 1 cut(s) 63
TfiI GAWTC 2 cut(s) 65, 71
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 1 cut(s) 218
Tsp45I GTSAC 1 cut(s) 145
TspGWI ACGGA 2 cut(s) 202, 206
XceI RCATGY 1 cut(s) 205
XcmI CCANNNNNNNNNTGG 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.