Rroxscaffold_5G00368320

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000308
Physical Location & Seq
Reverse (-)
50143611 .. 50143991
381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00368320.1

Sequence Viewer

Length: 381 bp
ATGGTGACCCGACACCGCATTGGTACCTCTAGATTGGCTGCAACTCTACCTTTTGTTTTTGCAGGTTCCTTTCTTCCTCGGAGATTTAGGCGTCAAGTTACTATAAAGGAGATTGAAGAACAGACAAAGGATGCTTCACCTATCACTAGTAAGAGGAGGAAACGATCGGGGGATACTTGTGTGTGTCCAAAAAAACCAAGGCTCAACTTGGCAATTGGGAAGAGAAAAATTAAGGTTGCAACCGTGGGCTTTATCACTTTGGAGTTGCCTATGGTAAAGCCAAGCAAGAAGAAGATAGGCCACCCCATTAACAGTCAAAATAAGAAACCATATGGCACCGCTGGCAAAGGCAAGAAAGGCAATGAAGTGGGAGGTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

13.95

Weight (kDa)

11.11

Isoelectric Point (pI)

47.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 53
Acc65I GGTACC 1 cut(s) 23
AccB1I GGYRCC 2 cut(s) 23, 335
AciI CCGC 2 cut(s) 16, 339
AcyI GRCGYC 1 cut(s) 91
AfaI GTAC 1 cut(s) 25
AgsI TTSAA 1 cut(s) 116
AhlI ACTAGT 1 cut(s) 146
AoxI GGCC 1 cut(s) 298
ApeKI GCWGC 1 cut(s) 38
Asp718I GGTACC 1 cut(s) 23
AsuHPI GGTGA 2 cut(s) 16, 129
BaeI ACNNNNGTAYC 2 cut(s) 165, 198
BanI GGYRCC 2 cut(s) 23, 335
BbvI GCAGC 1 cut(s) 25
BciVI GTATCC 1 cut(s) 166
BcuI ACTAGT 1 cut(s) 146
BfaI CTAG 2 cut(s) 30, 147
BfuAI ACCTGC 1 cut(s) 53
BfuI GTATCC 1 cut(s) 166
BisI GCNGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 40
BmiI GGNNCC 3 cut(s) 25, 67, 337
BmsI GCATC 1 cut(s) 121
BsaHI GRCGYC 1 cut(s) 91
BsaJI CCNNGG 3 cut(s) 77, 197, 243
Bse3DI GCAATG 1 cut(s) 367
BseDI CCNNGG 3 cut(s) 77, 197, 243
BseGI GGATG 1 cut(s) 136
BseMI GCAATG 1 cut(s) 367
BseRI GAGGAG 1 cut(s) 169
BseXI GCAGC 1 cut(s) 25
Bsh1285I CGRYCG 1 cut(s) 167
BshFI GGCC 1 cut(s) 300
BshNI GGYRCC 2 cut(s) 23, 335
BsiEI CGRYCG 1 cut(s) 167
BsnI GGCC 1 cut(s) 300
Bsp143I GATC 1 cut(s) 164
BspACI CCGC 2 cut(s) 16, 339
BspANI GGCC 1 cut(s) 300
BspLI GGNNCC 3 cut(s) 25, 67, 337
BspMI ACCTGC 1 cut(s) 53
BspT107I GGYRCC 2 cut(s) 23, 335
BsrDI GCAATG 1 cut(s) 367
BssECI CCNNGG 3 cut(s) 77, 197, 243
BssMI GATC 1 cut(s) 164
BssNI GRCGYC 1 cut(s) 91
BssT1I CCWWGG 1 cut(s) 197
Bst4CI ACNGT 2 cut(s) 244, 314
Bst6I CTCTTC 1 cut(s) 215
BstACI GRCGYC 1 cut(s) 91
BstC8I GCNNGC 1 cut(s) 343
BstDSI CCRYGG 1 cut(s) 243
BstEII GGTNACC 1 cut(s) 4
BstF5I GGATG 1 cut(s) 136
BstKTI GATC 1 cut(s) 167
BstMBI GATC 1 cut(s) 164
BstMCI CGRYCG 1 cut(s) 167
BstMWI GCNNNNNNNGC 2 cut(s) 342, 357
BstPI GGTNACC 1 cut(s) 4
BstV1I GCAGC 1 cut(s) 25
BsuI GTATCC 1 cut(s) 166
BsuRI GGCC 1 cut(s) 300
BtgI CCRYGG 1 cut(s) 243
BtsCI GGATG 1 cut(s) 136
BveI ACCTGC 1 cut(s) 53
Cac8I GCNNGC 1 cut(s) 343
CseI GACGC 1 cut(s) 80
Csp6I GTAC 1 cut(s) 24
CviJI RGCY 5 cut(s) 38, 202, 249, 280, 300
CviKI_1 RGCY 5 cut(s) 38, 202, 249, 280, 300
CviQI GTAC 1 cut(s) 24
DpnI GATC 1 cut(s) 166
DpnII GATC 1 cut(s) 164
Eam1104I CTCTTC 1 cut(s) 215
EarI CTCTTC 1 cut(s) 215
Eco130I CCWWGG 1 cut(s) 197
Eco91I GGTNACC 1 cut(s) 4
EcoO65I GGTNACC 1 cut(s) 4
EcoT14I CCWWGG 1 cut(s) 197
ErhI CCWWGG 1 cut(s) 197
FaiI YATR 4 cut(s) 104, 272, 331, 333
FauNDI CATATG 1 cut(s) 331
Fnu4HI GCNGC 1 cut(s) 39
FokI GGATG 1 cut(s) 143
Fsp4HI GCNGC 1 cut(s) 39
FspBI CTAG 2 cut(s) 30, 147
GluI GCNGC 1 cut(s) 39
HaeIII GGCC 1 cut(s) 300
HgaI GACGC 1 cut(s) 80
Hin1I GRCGYC 1 cut(s) 91
HphI GGTGA 2 cut(s) 16, 129
Hpy188I TCNGA 1 cut(s) 81
Hpy188III TCNNGA 1 cut(s) 30
HpyCH4III ACNGT 2 cut(s) 244, 314
HpyCH4V TGCA 3 cut(s) 41, 62, 239
HpyF10VI GCNNNNNNNGC 2 cut(s) 342, 357
Hsp92I GRCGYC 1 cut(s) 91
KpnI GGTACC 1 cut(s) 27
Kzo9I GATC 1 cut(s) 164
LpnPI CCDG 2 cut(s) 48, 327
Lsp1109I GCAGC 1 cut(s) 25
LweI GCATC 1 cut(s) 121
MaeI CTAG 2 cut(s) 30, 147
MaeIII GTNAC 2 cut(s) 4, 97
MalI GATC 1 cut(s) 166
MboI GATC 1 cut(s) 164
MboII GAAGA 5 cut(s) 65, 128, 232, 301, 304
MfeI CAATTG 1 cut(s) 213
MluCI AATT 2 cut(s) 213, 228
MnlI CCTC 5 cut(s) 37, 87, 147, 150, 365
MseI TTAA 2 cut(s) 231, 309
MspA1I CMGCKG 1 cut(s) 341
MunI CAATTG 1 cut(s) 213
MwoI GCNNNNNNNGC 2 cut(s) 342, 357
NdeI CATATG 1 cut(s) 331
NdeII GATC 1 cut(s) 164
NlaIV GGNNCC 3 cut(s) 25, 67, 337
NmuCI GTSAC 1 cut(s) 4
PkrI GCNGC 1 cut(s) 40
Ple19I CGATCG 1 cut(s) 167
PspEI GGTNACC 1 cut(s) 4
PspN4I GGNNCC 3 cut(s) 25, 67, 337
PvuI CGATCG 1 cut(s) 167
RsaI GTAC 1 cut(s) 25
RsaNI GTAC 1 cut(s) 24
SaqAI TTAA 2 cut(s) 231, 309
SatI GCNGC 1 cut(s) 39
Sau3AI GATC 1 cut(s) 164
SetI ASST 6 cut(s) 29, 52, 67, 142, 237, 376
SfaNI GCATC 1 cut(s) 121
SpeI ACTAGT 1 cut(s) 146
Sse9I AATT 2 cut(s) 213, 228
SsiI CCGC 2 cut(s) 16, 339
SspMI CTAG 2 cut(s) 30, 147
StyI CCWWGG 1 cut(s) 197
TaaI ACNGT 2 cut(s) 244, 314
TasI AATT 2 cut(s) 213, 228
Tru1I TTAA 2 cut(s) 231, 309
Tru9I TTAA 2 cut(s) 231, 309
TseFI GTSAC 1 cut(s) 4
TseI GCWGC 1 cut(s) 38
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 1 cut(s) 378
XbaI TCTAGA 1 cut(s) 29
XspI CTAG 2 cut(s) 30, 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.