Rmu_sc0039867.1_g000001

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0039867.1
OG0000308
Physical Location & Seq
Forward (+)
322 .. 686
365 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0039867.1_g000001.1.cds

Sequence Viewer

Length: 359 bp
atggcggacattgacgctatggctgcccgactggcgtcgtctttggtactggcgcaggggaaaagagcagtgaatctaaggccatccaagggcaagggtctccaccaaccggaggtgtatatggttggcaagttactcaaggcaagggagtacaggaaacagtcttttttggggatgtttcgatcagcatggcatgttggtggagatcttcgggtggagccggcaatgggggatctagttcttttctcattctcggatccggtggatcgtgctcgtgtgtggcatggcggcccgtggggtttcaaccaagcccctgtagcactggcagaatatgatgggatcgaaccagtcgaacaagt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

120

Amino Acids

13.24

Weight (kDa)

9.1

Isoelectric Point (pI)

48.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 5, 288
AclWI GGATC 5 cut(s) 240, 251, 264, 273, 347
AcyI GRCGYC 1 cut(s) 35
AfaI GTAC 2 cut(s) 48, 152
AfiI CCNNNNNNNGG 4 cut(s) 89, 109, 112, 227
AgsI TTSAA 1 cut(s) 304
Alw21I GWGCWC 1 cut(s) 274
Alw26I GTCTC 1 cut(s) 104
AlwI GGATC 5 cut(s) 240, 251, 264, 273, 347
AoxI GGCC 2 cut(s) 80, 289
ApeKI GCWGC 1 cut(s) 23
AspLEI GCGC 1 cut(s) 55
AspS9I GGNCC 1 cut(s) 290
BamHI GGATCC 1 cut(s) 256
BauI CACGAG 1 cut(s) 273
Bbv12I GWGCWC 1 cut(s) 274
BbvI GCAGC 1 cut(s) 10
BccI CCATC 2 cut(s) 91, 329
BcoDI GTCTC 1 cut(s) 104
BfaI CTAG 1 cut(s) 236
BfmI CTRYAG 1 cut(s) 315
BglI GCCNNNNNGGC 1 cut(s) 32
BglII AGATCT 1 cut(s) 205
BisI GCNGC 2 cut(s) 24, 289
BlsI GCNGC 2 cut(s) 25, 290
BmgT120I GGNCC 1 cut(s) 290
BmiI GGNNCC 2 cut(s) 219, 258
BoxI GACNNNNGTC 1 cut(s) 34
BpuEI CTTGAG 1 cut(s) 122
BsaHI GRCGYC 1 cut(s) 35
BsaI GGTCTC 1 cut(s) 104
BsaJI CCNNGG 2 cut(s) 87, 293
BsaWI WCCGGW 2 cut(s) 109, 259
Bsc4I CCNNNNNNNGG 4 cut(s) 89, 109, 112, 227
Bse118I RCCGGY 1 cut(s) 220
Bse1I ACTGG 4 cut(s) 36, 54, 327, 347
Bse3DI GCAATG 1 cut(s) 231
BseDI CCNNGG 2 cut(s) 87, 293
BseGI GGATG 2 cut(s) 83, 180
BseLI CCNNNNNNNGG 4 cut(s) 89, 109, 112, 227
BseMI GCAATG 1 cut(s) 231
BseNI ACTGG 4 cut(s) 36, 54, 327, 347
BseXI GCAGC 1 cut(s) 10
BshFI GGCC 2 cut(s) 82, 291
BsiHKAI GWGCWC 1 cut(s) 274
BsiSI CCGG 3 cut(s) 110, 221, 260
BslI CCNNNNNNNGG 4 cut(s) 89, 109, 112, 227
BsmAI GTCTC 1 cut(s) 104
BsnI GGCC 2 cut(s) 82, 291
Bso31I GGTCTC 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 274
Bsp143I GATC 6 cut(s) 182, 205, 232, 256, 265, 339
BspACI CCGC 2 cut(s) 5, 288
BspANI GGCC 2 cut(s) 82, 291
BspLI GGNNCC 2 cut(s) 219, 258
BspPI GGATC 5 cut(s) 240, 251, 264, 273, 347
BspTNI GGTCTC 1 cut(s) 104
BsrDI GCAATG 1 cut(s) 231
BsrFI RCCGGY 1 cut(s) 220
BsrI ACTGG 4 cut(s) 36, 54, 327, 347
BssAI RCCGGY 1 cut(s) 220
BssECI CCNNGG 2 cut(s) 87, 293
BssMI GATC 6 cut(s) 182, 205, 232, 256, 265, 339
BssNI GRCGYC 1 cut(s) 35
BssSI CACGAG 1 cut(s) 273
BssT1I CCWWGG 1 cut(s) 87
Bst2BI CACGAG 1 cut(s) 273
Bst4CI ACNGT 1 cut(s) 162
BstACI GRCGYC 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 222
BstDEI CTNAG 1 cut(s) 77
BstDSI CCRYGG 1 cut(s) 293
BstF5I GGATG 2 cut(s) 83, 180
BstHHI GCGC 1 cut(s) 55
BstKTI GATC 6 cut(s) 185, 208, 235, 259, 268, 342
BstMAI GTCTC 1 cut(s) 104
BstMBI GATC 6 cut(s) 182, 205, 232, 256, 265, 339
BstMWI GCNNNNNNNGC 3 cut(s) 23, 32, 317
BstNSI RCATGY 1 cut(s) 197
BstPAI GACNNNNGTC 1 cut(s) 34
BstSFI CTRYAG 1 cut(s) 315
BstV1I GCAGC 1 cut(s) 10
BstX2I RGATCY 3 cut(s) 205, 232, 256
BstYI RGATCY 3 cut(s) 205, 232, 256
BsuRI GGCC 2 cut(s) 82, 291
BtgI CCRYGG 1 cut(s) 293
BtsCI GGATG 2 cut(s) 83, 180
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 2 cut(s) 75, 320
Cac8I GCNNGC 1 cut(s) 222
CfoI GCGC 1 cut(s) 55
Cfr10I RCCGGY 1 cut(s) 220
Cfr13I GGNCC 1 cut(s) 290
CseI GACGC 2 cut(s) 23, 24
Csp6I GTAC 2 cut(s) 47, 151
CviAII CATG 3 cut(s) 189, 194, 284
CviJI RGCY 5 cut(s) 23, 82, 220, 291, 311
CviKI_1 RGCY 5 cut(s) 23, 82, 220, 291, 311
CviQI GTAC 2 cut(s) 47, 151
DdeI CTNAG 1 cut(s) 77
DpnI GATC 6 cut(s) 184, 207, 234, 258, 267, 341
DpnII GATC 6 cut(s) 182, 205, 232, 256, 265, 339
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 87
Eco31I GGTCTC 1 cut(s) 104
EcoT14I CCWWGG 1 cut(s) 87
ErhI CCWWGG 1 cut(s) 87
FaeI CATG 3 cut(s) 192, 197, 287
FaiI YATR 7 cut(s) 20, 120, 122, 190, 195, 285, 333
FatI CATG 3 cut(s) 188, 193, 283
Fnu4HI GCNGC 2 cut(s) 24, 289
FokI GGATG 2 cut(s) 70, 187
Fsp4HI GCNGC 2 cut(s) 24, 289
FspBI CTAG 1 cut(s) 236
GlaI GCGC 1 cut(s) 54
GluI GCNGC 2 cut(s) 24, 289
HaeIII GGCC 2 cut(s) 82, 291
HapII CCGG 3 cut(s) 110, 221, 260
HgaI GACGC 2 cut(s) 23, 24
HhaI GCGC 1 cut(s) 55
Hin1I GRCGYC 1 cut(s) 35
Hin1II CATG 3 cut(s) 192, 197, 287
Hin6I GCGC 1 cut(s) 53
HinP1I GCGC 1 cut(s) 53
HinfI GANTC 1 cut(s) 73
HpaII CCGG 3 cut(s) 110, 221, 260
Hpy188I TCNGA 1 cut(s) 256
Hpy99I CGWCG 1 cut(s) 40
HpyCH4III ACNGT 1 cut(s) 162
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 32, 317
HpyF3I CTNAG 1 cut(s) 77
Hsp92I GRCGYC 1 cut(s) 35
Hsp92II CATG 3 cut(s) 192, 197, 287
HspAI GCGC 1 cut(s) 53
KroI GCCGGC 1 cut(s) 220
KroNI GCCGGC 1 cut(s) 222
Kzo9I GATC 6 cut(s) 182, 205, 232, 256, 265, 339
LmnI GCTCC 1 cut(s) 217
LpnPI CCDG 9 cut(s) 17, 35, 41, 123, 139, 234, 273, 308, 327
Lsp1109I GCAGC 1 cut(s) 10
MaeI CTAG 1 cut(s) 236
MaeIII GTNAC 1 cut(s) 132
MalI GATC 6 cut(s) 184, 207, 234, 258, 267, 341
MboI GATC 6 cut(s) 182, 205, 232, 256, 265, 339
MboII GAAGA 1 cut(s) 200
MflI RGATCY 3 cut(s) 205, 232, 256
MhlI GDGCHC 1 cut(s) 274
MnlI CCTC 1 cut(s) 106
MroNI GCCGGC 1 cut(s) 220
MslI CAYNNNNRTG 1 cut(s) 198
MspI CCGG 3 cut(s) 110, 221, 260
MwoI GCNNNNNNNGC 3 cut(s) 23, 32, 317
NaeI GCCGGC 1 cut(s) 222
NdeII GATC 6 cut(s) 182, 205, 232, 256, 265, 339
NgoMIV GCCGGC 1 cut(s) 220
NlaIII CATG 3 cut(s) 192, 197, 287
NlaIV GGNNCC 2 cut(s) 219, 258
NspI RCATGY 1 cut(s) 197
PcsI WCGNNNNNNNCGW 1 cut(s) 348
PdiI GCCGGC 1 cut(s) 222
PfeI GAWTC 1 cut(s) 73
PkrI GCNGC 2 cut(s) 25, 290
PshAI GACNNNNGTC 1 cut(s) 34
PspN4I GGNNCC 2 cut(s) 219, 258
PspPI GGNCC 1 cut(s) 290
PsuI RGATCY 3 cut(s) 205, 232, 256
RsaI GTAC 2 cut(s) 48, 152
RsaNI GTAC 2 cut(s) 47, 151
RseI CAYNNNNRTG 1 cut(s) 198
SatI GCNGC 2 cut(s) 24, 289
Sau3AI GATC 6 cut(s) 182, 205, 232, 256, 265, 339
Sau96I GGNCC 1 cut(s) 290
SduI GDGCHC 1 cut(s) 274
SetI ASST 1 cut(s) 117
SfcI CTRYAG 1 cut(s) 315
SmiMI CAYNNNNRTG 1 cut(s) 198
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
SsiI CCGC 2 cut(s) 5, 288
SspMI CTAG 1 cut(s) 236
StyI CCWWGG 1 cut(s) 87
TaaI ACNGT 1 cut(s) 162
TaqI TCGA 3 cut(s) 181, 342, 351
TatI WGTACW 1 cut(s) 150
TauI GCSGC 1 cut(s) 291
TfiI GAWTC 1 cut(s) 73
TscAI CASTG 2 cut(s) 75, 327
TseI GCWGC 1 cut(s) 23
TspRI CASTG 2 cut(s) 75, 327
XceI RCATGY 1 cut(s) 197
XspI CTAG 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.