Rmu_sc0002260.1_g000065

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002260.1
OG0000308
Physical Location & Seq
Reverse (-)
287921 .. 289444
1524 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002260.1_g000065.1.cds

Sequence Viewer

Length: 921 bp
atggcaattgatgcaatggcagcccgcttggcctcctccctagcactggctgatggcaagcaaccggtggatttgcgaaagctactcacggcacgggaatattctcgtcgatctttccttggcctgtttcgatctgcatggagaatcaatggcagattgaatgttgaagaactcggagaagatgatagggtcttgttcacttttacagacccttcggatgtgaatagggtttggaaaggaggaccatggggatataacagggctcctatagccttagctccgtacgacggtgtcagtccggcaagggagatcccactgaagaaatcatcatattggatgacactacaaggagtgccaccggccttcatatccgaatggattatgcgactgattgaggtctattccgaggccataggagatcacatcctcatgggttgcgacaccaccgccttcgccgccgccacgtcggcaccggaaccagagcttggatcagagcgacgaggagaagaagaggagcgagtttcaagacaagtgcagattagagaattgagtgaacaaagactcaacgaagatccaatcacaggacaacgccgtagtagggaacatgatgaggtaactatctctccaaaaaaattgcgtttaagtcttgctattggaaaaaaaaatttggatgcagtgactatgggattgttgaagggacctccgaacaataatgatcaacctaagagaaagagaggacgtcctgttggaagtgtgaacaagctgccatatggaagagcaggaaaaggaagaaaaaaggatggagaacaagaaaagataaagagcaaaaagaccaacctgatgccgaggttattagctgctaatgaacctgaaacaagcactaactctaaccctaaggggaaagagcaagtgcttgcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

306

Amino Acids

34.11

Weight (kDa)

9.68

Isoelectric Point (pI)

51.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 742
AccB1I GGYRCC 1 cut(s) 469
AccB7I CCANNNNNTGG 1 cut(s) 485
AciI CCGC 4 cut(s) 25, 447, 456, 459
AclWI GGATC 3 cut(s) 304, 496, 566
AcsI RAATTY 1 cut(s) 664
AcuI CTGAAG 1 cut(s) 338
AcyI GRCGYC 1 cut(s) 739
AfaI GTAC 1 cut(s) 284
AfiI CCNNNNNNNGG 5 cut(s) 46, 287, 485, 581, 598
AgeI ACCGGT 1 cut(s) 64
AgsI TTSAA 4 cut(s) 160, 167, 525, 694
AjiI CACGTC 1 cut(s) 465
AjuI GAANNNNNNNTTGG 2 cut(s) 468, 500
AluBI AGCT 5 cut(s) 82, 278, 484, 763, 857
AluI AGCT 5 cut(s) 82, 278, 484, 763, 857
AlwI GGATC 3 cut(s) 304, 496, 566
AoxI GGCC 4 cut(s) 30, 121, 360, 408
ApeKI GCWGC 3 cut(s) 20, 763, 857
ApoI RAATTY 1 cut(s) 664
AsiGI ACCGGT 1 cut(s) 64
AspS9I GGNCC 2 cut(s) 242, 698
AvaII GGWCC 2 cut(s) 242, 698
AxyI CCTNAGG 1 cut(s) 894
BanI GGYRCC 1 cut(s) 469
BanII GRGCYC 1 cut(s) 265
BbvI GCAGC 3 cut(s) 32, 750, 844
BccI CCATC 2 cut(s) 47, 794
BceAI ACGGC 2 cut(s) 105, 576
BclI TGATCA 1 cut(s) 715
BfaI CTAG 1 cut(s) 41
BfmI CTRYAG 1 cut(s) 267
BglI GCCNNNNNGGC 2 cut(s) 29, 467
BisI GCNGC 5 cut(s) 21, 456, 459, 764, 858
BlsI GCNGC 5 cut(s) 22, 457, 460, 765, 859
Bme18I GGWCC 2 cut(s) 242, 698
BmgBI CACGTC 1 cut(s) 465
BmgT120I GGNCC 2 cut(s) 242, 698
BmiI GGNNCC 4 cut(s) 264, 471, 477, 699
BmsI GCATC 2 cut(s) 661, 831
Bpu10I CCTNAGC 1 cut(s) 274
BsaHI GRCGYC 1 cut(s) 739
BsaJI CCNNGG 4 cut(s) 118, 245, 405, 845
BsaWI WCCGGW 2 cut(s) 64, 472
BsaXI ACNNNNNCTCC 2 cut(s) 607, 637
Bsc4I CCNNNNNNNGG 5 cut(s) 46, 287, 485, 581, 598
Bse118I RCCGGY 2 cut(s) 64, 358
Bse1I ACTGG 1 cut(s) 51
Bse21I CCTNAGG 1 cut(s) 894
Bse3DI GCAATG 1 cut(s) 21
BseDI CCNNGG 4 cut(s) 118, 245, 405, 845
BseGI GGATG 5 cut(s) 223, 342, 423, 676, 805
BseLI CCNNNNNNNGG 5 cut(s) 46, 287, 485, 581, 598
BseMI GCAATG 1 cut(s) 21
BseNI ACTGG 1 cut(s) 51
BseRI GAGGAG 3 cut(s) 25, 516, 527
BseXI GCAGC 3 cut(s) 32, 750, 844
BsgI GTGCAG 1 cut(s) 554
BshFI GGCC 4 cut(s) 32, 123, 362, 410
BshNI GGYRCC 1 cut(s) 469
BshTI ACCGGT 1 cut(s) 64
BsiSI CCGG 4 cut(s) 65, 299, 359, 473
BsiWI CGTACG 1 cut(s) 282
BslFI GGGAC 1 cut(s) 711
BslI CCNNNNNNNGG 5 cut(s) 46, 287, 485, 581, 598
BsmFI GGGAC 1 cut(s) 711
BsnI GGCC 4 cut(s) 32, 123, 362, 410
Bsp1286I GDGCHC 1 cut(s) 265
Bsp143I GATC 7 cut(s) 110, 131, 309, 418, 488, 571, 715
Bsp19I CCATGG 1 cut(s) 245
BspACI CCGC 4 cut(s) 25, 447, 456, 459
BspANI GGCC 4 cut(s) 32, 123, 362, 410
BspLI GGNNCC 4 cut(s) 264, 471, 477, 699
BspPI GGATC 3 cut(s) 304, 496, 566
BspQI GCTCTTC 1 cut(s) 769
BspT107I GGYRCC 1 cut(s) 469
BsrDI GCAATG 1 cut(s) 21
BsrFI RCCGGY 2 cut(s) 64, 358
BsrI ACTGG 1 cut(s) 51
BssAI RCCGGY 2 cut(s) 64, 358
BssECI CCNNGG 4 cut(s) 118, 245, 405, 845
BssMI GATC 7 cut(s) 110, 131, 309, 418, 488, 571, 715
BssNI GRCGYC 1 cut(s) 739
BssT1I CCWWGG 2 cut(s) 118, 245
Bst4CI ACNGT 1 cut(s) 290
Bst6I CTCTTC 2 cut(s) 504, 769
BstACI GRCGYC 1 cut(s) 739
BstAPI GCANNNNNTGC 1 cut(s) 11
BstC8I GCNNGC 3 cut(s) 25, 59, 915
BstDEI CTNAG 3 cut(s) 274, 723, 894
BstDSI CCRYGG 1 cut(s) 245
BstF5I GGATG 5 cut(s) 223, 342, 423, 676, 805
BstKTI GATC 7 cut(s) 113, 134, 312, 421, 491, 574, 718
BstMBI GATC 7 cut(s) 110, 131, 309, 418, 488, 571, 715
BstMWI GCNNNNNNNGC 6 cut(s) 11, 20, 29, 269, 455, 467
BstSFI CTRYAG 1 cut(s) 267
BstV1I GCAGC 3 cut(s) 32, 750, 844
BstX2I RGATCY 2 cut(s) 309, 571
BstYI RGATCY 2 cut(s) 309, 571
Bsu36I CCTNAGG 1 cut(s) 894
BsuRI GGCC 4 cut(s) 32, 123, 362, 410
BtgI CCRYGG 1 cut(s) 245
BtrI CACGTC 1 cut(s) 465
BtsCI GGATG 5 cut(s) 223, 342, 423, 676, 805
BtsI GCAGTG 1 cut(s) 681
BtsIMutI CAGTG 3 cut(s) 44, 314, 681
Cac8I GCNNGC 3 cut(s) 25, 59, 915
Cfr10I RCCGGY 2 cut(s) 64, 358
Cfr13I GGNCC 2 cut(s) 242, 698
Csp6I GTAC 1 cut(s) 283
CspAI ACCGGT 1 cut(s) 64
CviAII CATG 4 cut(s) 138, 246, 430, 605
CviQI GTAC 1 cut(s) 283
DdeI CTNAG 3 cut(s) 274, 723, 894
DpnI GATC 7 cut(s) 112, 133, 311, 420, 490, 573, 717
DpnII GATC 7 cut(s) 110, 131, 309, 418, 488, 571, 715
Eam1104I CTCTTC 2 cut(s) 504, 769
EarI CTCTTC 2 cut(s) 504, 769
Eco130I CCWWGG 2 cut(s) 118, 245
Eco24I GRGCYC 1 cut(s) 265
Eco47I GGWCC 2 cut(s) 242, 698
Eco57I CTGAAG 1 cut(s) 338
Eco81I CCTNAGG 1 cut(s) 894
EcoO109I RGGNCCY 1 cut(s) 698
EcoT14I CCWWGG 2 cut(s) 118, 245
EcoT38I GRGCYC 1 cut(s) 265
ErhI CCWWGG 2 cut(s) 118, 245
FaeI CATG 4 cut(s) 141, 249, 433, 608
FaqI GGGAC 1 cut(s) 711
FatI CATG 4 cut(s) 137, 245, 429, 604
FauI CCCGC 1 cut(s) 32
FauNDI CATATG 1 cut(s) 769
FbaI TGATCA 1 cut(s) 715
Fnu4HI GCNGC 5 cut(s) 21, 456, 459, 764, 858
FokI GGATG 5 cut(s) 230, 349, 410, 683, 812
FriOI GRGCYC 1 cut(s) 265
Fsp4HI GCNGC 5 cut(s) 21, 456, 459, 764, 858
FspBI CTAG 1 cut(s) 41
GluI GCNGC 5 cut(s) 21, 456, 459, 764, 858
HaeIII GGCC 4 cut(s) 32, 123, 362, 410
HapII CCGG 4 cut(s) 65, 299, 359, 473
Hin1I GRCGYC 1 cut(s) 739
Hin1II CATG 4 cut(s) 141, 249, 433, 608
HinfI GANTC 2 cut(s) 144, 561
HpaII CCGG 4 cut(s) 65, 299, 359, 473
Hpy166II GTNNAC 3 cut(s) 198, 554, 757
Hpy188I TCNGA 6 cut(s) 176, 217, 373, 406, 493, 705
Hpy188III TCNNGA 1 cut(s) 525
Hpy8I GTNNAC 3 cut(s) 198, 554, 757
Hpy99I CGWCG 4 cut(s) 111, 290, 469, 501
HpyAV CCTTC 4 cut(s) 222, 373, 460, 688
HpyCH4III ACNGT 1 cut(s) 290
HpyCH4IV ACGT 2 cut(s) 464, 739
HpyCH4V TGCA 4 cut(s) 14, 137, 535, 674
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 20, 29, 269, 455, 467
HpyF3I CTNAG 3 cut(s) 274, 723, 894
HpySE526I ACGT 2 cut(s) 464, 739
Hsp92I GRCGYC 1 cut(s) 739
Hsp92II CATG 4 cut(s) 141, 249, 433, 608
Ksp22I TGATCA 1 cut(s) 715
Kzo9I GATC 7 cut(s) 110, 131, 309, 418, 488, 571, 715
LguI GCTCTTC 1 cut(s) 769
LmnI GCTCC 3 cut(s) 268, 283, 514
Lsp1109I GCAGC 3 cut(s) 32, 750, 844
LweI GCATC 2 cut(s) 661, 831
MaeI CTAG 1 cut(s) 41
MaeII ACGT 2 cut(s) 464, 739
MaeIII GTNAC 2 cut(s) 613, 676
MalI GATC 7 cut(s) 112, 133, 311, 420, 490, 573, 717
MboI GATC 7 cut(s) 110, 131, 309, 418, 488, 571, 715
MboII GAAGA 8 cut(s) 179, 191, 331, 518, 521, 581, 786, 801
MfeI CAATTG 1 cut(s) 6
MflI RGATCY 2 cut(s) 309, 571
MhlI GDGCHC 1 cut(s) 265
MluCI AATT 4 cut(s) 6, 545, 632, 664
MlyI GAGTC 1 cut(s) 555
MmeI TCCRAC 1 cut(s) 727
MseI TTAA 2 cut(s) 641, 919
MslI CAYNNNNRTG 1 cut(s) 428
MspI CCGG 4 cut(s) 65, 299, 359, 473
MunI CAATTG 1 cut(s) 6
MwoI GCNNNNNNNGC 6 cut(s) 11, 20, 29, 269, 455, 467
NcoI CCATGG 1 cut(s) 245
NdeI CATATG 1 cut(s) 769
NdeII GATC 7 cut(s) 110, 131, 309, 418, 488, 571, 715
NlaIII CATG 4 cut(s) 141, 249, 433, 608
NlaIV GGNNCC 4 cut(s) 264, 471, 477, 699
NmeAIII GCCGAG 1 cut(s) 870
NmuCI GTSAC 1 cut(s) 676
PciSI GCTCTTC 1 cut(s) 769
PfeI GAWTC 1 cut(s) 144
Pfl23II CGTACG 1 cut(s) 282
PflFI GACNNNGTC 1 cut(s) 290
PflMI CCANNNNNTGG 1 cut(s) 485
PinAI ACCGGT 1 cut(s) 64
PkrI GCNGC 5 cut(s) 22, 457, 460, 765, 859
PleI GAGTC 1 cut(s) 555
PpsI GAGTC 1 cut(s) 555
PpuMI RGGWCCY 1 cut(s) 698
Psp5II RGGWCCY 1 cut(s) 698
PspLI CGTACG 1 cut(s) 282
PspN4I GGNNCC 4 cut(s) 264, 471, 477, 699
PspPI GGNCC 2 cut(s) 242, 698
PspPPI RGGWCCY 1 cut(s) 698
PsuI RGATCY 2 cut(s) 309, 571
PsyI GACNNNGTC 1 cut(s) 290
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
RseI CAYNNNNRTG 1 cut(s) 428
SapI GCTCTTC 1 cut(s) 769
SaqAI TTAA 2 cut(s) 641, 919
SatI GCNGC 5 cut(s) 21, 456, 459, 764, 858
Sau3AI GATC 7 cut(s) 110, 131, 309, 418, 488, 571, 715
Sau96I GGNCC 2 cut(s) 242, 698
SchI GAGTC 1 cut(s) 555
SduI GDGCHC 1 cut(s) 265
SfaNI GCATC 2 cut(s) 661, 831
SfcI CTRYAG 1 cut(s) 267
SinI GGWCC 2 cut(s) 242, 698
SmiMI CAYNNNNRTG 1 cut(s) 428
Sse9I AATT 4 cut(s) 6, 545, 632, 664
SsiI CCGC 4 cut(s) 25, 447, 456, 459
SspI AATATT 1 cut(s) 101
SspMI CTAG 1 cut(s) 41
StyI CCWWGG 2 cut(s) 118, 245
TaaI ACNGT 1 cut(s) 290
TaiI ACGT 2 cut(s) 467, 742
TaqI TCGA 2 cut(s) 109, 130
TasI AATT 4 cut(s) 6, 545, 632, 664
TauI GCSGC 2 cut(s) 458, 461
TfiI GAWTC 1 cut(s) 144
Tru1I TTAA 2 cut(s) 641, 919
Tru9I TTAA 2 cut(s) 641, 919
TscAI CASTG 3 cut(s) 51, 321, 681
TseFI GTSAC 1 cut(s) 676
TseI GCWGC 3 cut(s) 20, 763, 857
Tsp45I GTSAC 1 cut(s) 676
TspDTI ATGAA 2 cut(s) 355, 879
TspGWI ACGGA 1 cut(s) 270
TspRI CASTG 3 cut(s) 51, 321, 681
Tth111I GACNNNGTC 1 cut(s) 290
Van91I CCANNNNNTGG 1 cut(s) 485
VpaK11BI GGWCC 2 cut(s) 242, 698
XapI RAATTY 1 cut(s) 664
XspI CTAG 1 cut(s) 41
ZraI GACGTC 1 cut(s) 740
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.