Rmu_sc0001069.1_g000045

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001069.1
OG0000308
Physical Location & Seq
Reverse (-)
185399 .. 186689
1291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001069.1_g000045.1.cds

Sequence Viewer

Length: 639 bp
atgagggattttactgtggtaggtttccaaaaccggaaacccaccctcttctctctcttctcccccgaactctctctttccctttcagtcacttcgcctccccctctatttctcgccgtcaggccaccacaggagcgcctccctcctctctgcaccctagtggccttagattgtagcgatttagccgaggaaccttggatccaagcaaagttcttcatagttgcagtttggggttttcgtcgatttccagcgattccggccatctccggtcaccaaactggcgtcgaagttgagaaaaatgatcagtgtgtcaagttgttgttgtacatgaaatttggtagctggttgtgggggttgttaccggcgcgtgggcgccactcgccgcctctaagcatatcaaatttcggctgccgatcctttatgggcatgttccaatctgcctggagaatcaatggaacactgagggttaaggagattggtgaagatgacagggtcctattctctttttcagattcgactgataaggctaggatttggaagggaggcccctgggtttttaaccaagccacgattgctttagcagattatgatggagtcggccaatttcgagaggttcaactgaaatcatcctccaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

23.84

Weight (kDa)

9.0

Isoelectric Point (pI)

40.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 372
AccII CGCG 1 cut(s) 367
AciI CCGC 1 cut(s) 383
AclWI GGATC 3 cut(s) 193, 206, 408
AcoI YGGCCR 2 cut(s) 258, 598
AcsI RAATTY 2 cut(s) 332, 400
AcyI GRCGYC 2 cut(s) 282, 373
AfaI GTAC 1 cut(s) 326
AfiI CCNNNNNNNGG 1 cut(s) 368
AgsI TTSAA 1 cut(s) 617
AjnI CCWGG 2 cut(s) 440, 548
AleI CACNNNNGTG 1 cut(s) 158
AloI GAACNNNNNNTCC 2 cut(s) 183, 215
AluBI AGCT 1 cut(s) 342
AluI AGCT 1 cut(s) 342
AlwI GGATC 3 cut(s) 193, 206, 408
AoxI GGCC 5 cut(s) 122, 162, 258, 544, 598
ApeKI GCWGC 1 cut(s) 408
ApoI RAATTY 2 cut(s) 332, 400
AspLEI GCGC 3 cut(s) 138, 367, 375
AspS9I GGNCC 2 cut(s) 493, 545
AsuHPI GGTGA 2 cut(s) 263, 491
AvaII GGWCC 1 cut(s) 493
BamHI GGATCC 1 cut(s) 198
BanI GGYRCC 1 cut(s) 372
BbvI GCAGC 1 cut(s) 395
BccI CCATC 2 cut(s) 269, 584
BceAI ACGGC 1 cut(s) 101
BciT130I CCWGG 2 cut(s) 442, 550
BclI TGATCA 1 cut(s) 301
BfaI CTAG 3 cut(s) 158, 528, 637
BfoI RGCGCY 2 cut(s) 139, 376
BisI GCNGC 2 cut(s) 383, 409
BlsI GCNGC 2 cut(s) 384, 410
Bme1390I CCNGG 2 cut(s) 442, 550
Bme18I GGWCC 1 cut(s) 493
BmgT120I GGNCC 2 cut(s) 493, 545
BmiI GGNNCC 5 cut(s) 192, 200, 374, 494, 547
BmrFI CCNGG 2 cut(s) 442, 550
BpmI CTGGAG 1 cut(s) 463
BsaHI GRCGYC 2 cut(s) 282, 373
BsaJI CCNNGG 4 cut(s) 186, 194, 548, 549
BsaWI WCCGGW 2 cut(s) 33, 266
BsaXI ACNNNNNCTCC 2 cut(s) 82, 112
Bsc4I CCNNNNNNNGG 1 cut(s) 368
Bse118I RCCGGY 1 cut(s) 361
Bse1I ACTGG 1 cut(s) 283
BseBI CCWGG 2 cut(s) 442, 550
BseDI CCNNGG 4 cut(s) 186, 194, 548, 549
BseGI GGATG 1 cut(s) 626
BseLI CCNNNNNNNGG 1 cut(s) 368
BseMII CTCAG 1 cut(s) 452
BseNI ACTGG 1 cut(s) 283
BseRI GAGGAG 1 cut(s) 135
BseXI GCAGC 1 cut(s) 395
BsgI GTGCAG 1 cut(s) 136
Bsh1236I CGCG 1 cut(s) 367
BshFI GGCC 5 cut(s) 124, 164, 260, 546, 600
BshNI GGYRCC 1 cut(s) 372
BsiSI CCGG 4 cut(s) 34, 257, 267, 362
BslI CCNNNNNNNGG 1 cut(s) 368
BsnI GGCC 5 cut(s) 124, 164, 260, 546, 600
Bsp1407I TGTACA 1 cut(s) 324
Bsp143I GATC 3 cut(s) 198, 301, 413
BspACI CCGC 1 cut(s) 383
BspANI GGCC 5 cut(s) 124, 164, 260, 546, 600
BspCNI CTCAG 1 cut(s) 453
BspFNI CGCG 1 cut(s) 367
BspLI GGNNCC 5 cut(s) 192, 200, 374, 494, 547
BspPI GGATC 3 cut(s) 193, 206, 408
BspT107I GGYRCC 1 cut(s) 372
BsrFI RCCGGY 1 cut(s) 361
BsrGI TGTACA 1 cut(s) 324
BsrI ACTGG 1 cut(s) 283
BssAI RCCGGY 1 cut(s) 361
BssECI CCNNGG 4 cut(s) 186, 194, 548, 549
BssMI GATC 3 cut(s) 198, 301, 413
BssNI GRCGYC 2 cut(s) 282, 373
BssT1I CCWWGG 1 cut(s) 194
Bst2UI CCWGG 2 cut(s) 442, 550
Bst4CI ACNGT 1 cut(s) 16
Bst6I CTCTTC 2 cut(s) 53, 62
BstACI GRCGYC 2 cut(s) 282, 373
BstAUI TGTACA 1 cut(s) 324
BstDEI CTNAG 3 cut(s) 166, 389, 461
BstEII GGTNACC 1 cut(s) 269
BstF5I GGATG 1 cut(s) 626
BstFNI CGCG 1 cut(s) 367
BstH2I RGCGCY 2 cut(s) 139, 376
BstHHI GCGC 3 cut(s) 138, 367, 375
BstKTI GATC 3 cut(s) 201, 304, 416
BstMBI GATC 3 cut(s) 198, 301, 413
BstMWI GCNNNNNNNGC 3 cut(s) 257, 379, 572
BstNI CCWGG 2 cut(s) 442, 550
BstNSI RCATGY 1 cut(s) 430
BstPI GGTNACC 1 cut(s) 269
BstSCI CCNGG 2 cut(s) 440, 548
BstUI CGCG 1 cut(s) 367
BstV1I GCAGC 1 cut(s) 395
BstX2I RGATCY 1 cut(s) 198
BstYI RGATCY 1 cut(s) 198
BsuRI GGCC 5 cut(s) 124, 164, 260, 546, 600
BtsCI GGATG 1 cut(s) 626
BtsIMutI CAGTG 2 cut(s) 311, 458
CfoI GCGC 3 cut(s) 138, 367, 375
Cfr10I RCCGGY 1 cut(s) 361
Cfr13I GGNCC 2 cut(s) 493, 545
CseI GACGC 1 cut(s) 271
Csp6I GTAC 1 cut(s) 325
CviAII CATG 2 cut(s) 328, 427
CviQI GTAC 1 cut(s) 325
DdeI CTNAG 3 cut(s) 166, 389, 461
DinI GGCGCC 1 cut(s) 374
DpnI GATC 3 cut(s) 200, 303, 415
DpnII GATC 3 cut(s) 198, 301, 413
EaeI YGGCCR 2 cut(s) 258, 598
Eam1104I CTCTTC 2 cut(s) 53, 62
EarI CTCTTC 2 cut(s) 53, 62
Eco130I CCWWGG 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 493
Eco91I GGTNACC 1 cut(s) 269
EcoO109I RGGNCCY 2 cut(s) 493, 545
EcoO65I GGTNACC 1 cut(s) 269
EcoRII CCWGG 2 cut(s) 440, 548
EcoT14I CCWWGG 1 cut(s) 194
EgeI GGCGCC 1 cut(s) 374
EheI GGCGCC 1 cut(s) 374
ErhI CCWWGG 1 cut(s) 194
FaeI CATG 2 cut(s) 331, 430
FaiI YATR 6 cut(s) 218, 329, 395, 422, 428, 588
FatI CATG 2 cut(s) 327, 426
FbaI TGATCA 1 cut(s) 301
Fnu4HI GCNGC 2 cut(s) 383, 409
FokI GGATG 1 cut(s) 613
Fsp4HI GCNGC 2 cut(s) 383, 409
FspBI CTAG 3 cut(s) 158, 528, 637
GlaI GCGC 3 cut(s) 137, 366, 374
GluI GCNGC 2 cut(s) 383, 409
GsuI CTGGAG 1 cut(s) 463
HaeII RGCGCY 2 cut(s) 139, 376
HaeIII GGCC 5 cut(s) 124, 164, 260, 546, 600
HapII CCGG 4 cut(s) 34, 257, 267, 362
HgaI GACGC 1 cut(s) 271
HhaI GCGC 3 cut(s) 138, 367, 375
Hin1I GRCGYC 2 cut(s) 282, 373
Hin1II CATG 2 cut(s) 331, 430
Hin6I GCGC 3 cut(s) 136, 365, 373
HinP1I GCGC 3 cut(s) 136, 365, 373
HinfI GANTC 4 cut(s) 253, 447, 512, 594
HpaII CCGG 4 cut(s) 34, 257, 267, 362
HphI GGTGA 2 cut(s) 263, 491
Hpy188I TCNGA 1 cut(s) 511
Hpy188III TCNNGA 1 cut(s) 608
Hpy99I CGWCG 2 cut(s) 243, 287
HpyAV CCTTC 1 cut(s) 532
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4V TGCA 2 cut(s) 153, 224
HpyF10VI GCNNNNNNNGC 3 cut(s) 257, 379, 572
HpyF3I CTNAG 3 cut(s) 166, 389, 461
Hsp92I GRCGYC 2 cut(s) 282, 373
Hsp92II CATG 2 cut(s) 331, 430
HspAI GCGC 3 cut(s) 136, 365, 373
KasI GGCGCC 1 cut(s) 372
Ksp22I TGATCA 1 cut(s) 301
Kzo9I GATC 3 cut(s) 198, 301, 413
LmnI GCTCC 1 cut(s) 133
Lsp1109I GCAGC 1 cut(s) 395
MaeI CTAG 3 cut(s) 158, 528, 637
MaeIII GTNAC 3 cut(s) 88, 269, 357
MalI GATC 3 cut(s) 200, 303, 415
MboI GATC 3 cut(s) 198, 301, 413
MboII GAAGA 4 cut(s) 40, 49, 205, 494
MflI RGATCY 1 cut(s) 198
MluCI AATT 3 cut(s) 332, 400, 602
Mly113I GGCGCC 1 cut(s) 373
MlyI GAGTC 1 cut(s) 603
MseI TTAA 2 cut(s) 468, 558
MslI CAYNNNNRTG 1 cut(s) 158
MspI CCGG 4 cut(s) 34, 257, 267, 362
MspR9I CCNGG 2 cut(s) 442, 550
MvaI CCWGG 2 cut(s) 442, 550
MvnI CGCG 1 cut(s) 367
MwoI GCNNNNNNNGC 3 cut(s) 257, 379, 572
NarI GGCGCC 1 cut(s) 373
NdeII GATC 3 cut(s) 198, 301, 413
NlaIII CATG 2 cut(s) 331, 430
NlaIV GGNNCC 5 cut(s) 192, 200, 374, 494, 547
NmeAIII GCCGAG 1 cut(s) 211
NmuCI GTSAC 2 cut(s) 88, 269
NspI RCATGY 1 cut(s) 430
OliI CACNNNNGTG 1 cut(s) 158
PasI CCCWGGG 1 cut(s) 549
PfeI GAWTC 3 cut(s) 253, 447, 512
PflFI GACNNNGTC 1 cut(s) 491
PkrI GCNGC 2 cut(s) 384, 410
PleI GAGTC 1 cut(s) 602
PluTI GGCGCC 1 cut(s) 376
PpsI GAGTC 1 cut(s) 602
PpuMI RGGWCCY 1 cut(s) 493
Psp5II RGGWCCY 1 cut(s) 493
Psp6I CCWGG 2 cut(s) 440, 548
PspEI GGTNACC 1 cut(s) 269
PspGI CCWGG 2 cut(s) 440, 548
PspN4I GGNNCC 5 cut(s) 192, 200, 374, 494, 547
PspPI GGNCC 2 cut(s) 493, 545
PspPPI RGGWCCY 1 cut(s) 493
PsuI RGATCY 1 cut(s) 198
PsyI GACNNNGTC 1 cut(s) 491
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
RseI CAYNNNNRTG 1 cut(s) 158
SaqAI TTAA 2 cut(s) 468, 558
SatI GCNGC 2 cut(s) 383, 409
Sau3AI GATC 3 cut(s) 198, 301, 413
Sau96I GGNCC 2 cut(s) 493, 545
SchI GAGTC 1 cut(s) 603
ScrFI CCNGG 2 cut(s) 442, 550
SetI ASST 4 cut(s) 25, 196, 344, 615
SfoI GGCGCC 1 cut(s) 374
SinI GGWCC 1 cut(s) 493
SmiMI CAYNNNNRTG 1 cut(s) 158
Sse9I AATT 3 cut(s) 332, 400, 602
SsiI CCGC 1 cut(s) 383
SspDI GGCGCC 1 cut(s) 372
SspMI CTAG 3 cut(s) 158, 528, 637
StyD4I CCNGG 2 cut(s) 440, 548
StyI CCWWGG 1 cut(s) 194
TaaI ACNGT 1 cut(s) 16
TaqI TCGA 4 cut(s) 241, 285, 515, 607
TasI AATT 3 cut(s) 332, 400, 602
TatI WGTACW 1 cut(s) 324
TauI GCSGC 1 cut(s) 385
TfiI GAWTC 3 cut(s) 253, 447, 512
Tru1I TTAA 2 cut(s) 468, 558
Tru9I TTAA 2 cut(s) 468, 558
TscAI CASTG 2 cut(s) 311, 465
TseFI GTSAC 2 cut(s) 88, 269
TseI GCWGC 1 cut(s) 408
Tsp45I GTSAC 2 cut(s) 88, 269
TspDTI ATGAA 2 cut(s) 205, 344
TspRI CASTG 2 cut(s) 311, 465
Tth111I GACNNNGTC 1 cut(s) 491
VpaK11BI GGWCC 1 cut(s) 493
XapI RAATTY 2 cut(s) 332, 400
XceI RCATGY 1 cut(s) 430
XspI CTAG 3 cut(s) 158, 528, 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.