Rmu_co8409011.1_g000001

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8409011.1
OG0000308
Physical Location & Seq
Forward (+)
254 .. 1326
1073 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8409011.1_g000001.1.cds

Sequence Viewer

Length: 1001 bp
atgacaacaatcgatgcaatggcagcccgcctggcctcctccctagccctggctgacgggaagaaaccggtggatctgcgtccatccaaggagatgagacaacctgaagcgttcatgattggcaagctccttacggcgaaggaatactctcgcagttcgttccagggaatgttccgagctgcatggaggattaatggcagcctccggaaaggcggaccatggggctataatagagctccgatagcccttgcaccgtatgatggtgtcagcccggcggtggatgtacccctcaagaagtcatcgtactggatgacgctacaaggaataccaccggcattcagatcggagcgcattatgcgcctcattggcagcacgattggcgacctcaaggaaatcgatcgtccgacgttcaggaatcgagttatgcgtattcgggttgagatcgactacgtgaaacctctgttgttccgtcgtcgattctgggtagaagatgaagtccagttcatagtgcagttcaggtatgacaagattttcggtcgatgcggcacttgtggattggttactcatgttggcctcccctgctccgggtcggaactagttgaagacaatgatacaccggtgggggcagtagcaccacccacggctttagctgtcatgagggaacaacctgtaccgaaccctaattctaatagggtggtgatcaataaccaaaccctaatattcaaagctcaggtgccaaggagtataccagaagctcttctttctcaatcggtgatgaacatgcgacgccacaagaggcaggtacagattcgggaactgcctgaaccaagactcaatgagaacccaatcaccggactccgtaggattcgggaagatgatgaggtaacagtctctcctaaaaaactccgtttgagtcttgccattggaaagaaaaatttggatgcagtgaacatgggattactagagggaccttccaatactatcgaacagcctaagaggaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

333

Amino Acids

37.51

Weight (kDa)

10.13

Isoelectric Point (pI)

47.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 790
AccB1I GGYRCC 1 cut(s) 733
AccI GTMKAC 1 cut(s) 745
AccIII TCCGGA 1 cut(s) 204
AciI CCGC 4 cut(s) 28, 213, 275, 543
AclWI GGATC 1 cut(s) 81
AcsI RAATTY 1 cut(s) 934
AcuI CTGAAG 1 cut(s) 126
AcyI GRCGYC 1 cut(s) 787
AfaI GTAC 4 cut(s) 285, 305, 672, 804
AfiI CCNNNNNNNGG 6 cut(s) 49, 260, 277, 584, 585, 851
AgeI ACCGGT 2 cut(s) 67, 616
AgsI TTSAA 2 cut(s) 602, 724
AhlI ACTAGT 1 cut(s) 595
AjnI CCWGG 3 cut(s) 30, 48, 162
AluBI AGCT 6 cut(s) 127, 179, 236, 650, 728, 755
AluI AGCT 6 cut(s) 127, 179, 236, 650, 728, 755
Alw21I GWGCWC 1 cut(s) 238
Alw26I GTCTC 2 cut(s) 91, 895
AlwI GGATC 1 cut(s) 81
Aor13HI TCCGGA 1 cut(s) 204
AoxI GGCC 2 cut(s) 33, 571
ApeKI GCWGC 4 cut(s) 23, 179, 198, 369
ApoI RAATTY 1 cut(s) 934
ArsI GACNNNNNNTTYG 2 cut(s) 515, 547
AseI ATTAAT 1 cut(s) 192
AsiGI ACCGGT 2 cut(s) 67, 616
Asp700I GAANNNNTTC 1 cut(s) 756
AspLEI GCGC 2 cut(s) 351, 360
AspS9I GGNCC 2 cut(s) 215, 968
AsuC2I CCSGG 2 cut(s) 272, 586
AsuHPI GGTGA 3 cut(s) 709, 784, 841
AvaII GGWCC 2 cut(s) 215, 968
BaeI ACNNNNGTAYC 2 cut(s) 603, 636
BanI GGYRCC 1 cut(s) 733
BanII GRGCYC 1 cut(s) 238
BarI GAAGNNNNNNTAC 2 cut(s) 287, 319
BbsI GAAGAC 1 cut(s) 609
Bbv12I GWGCWC 1 cut(s) 238
BbvI GCAGC 4 cut(s) 35, 166, 210, 381
BccI CCATC 2 cut(s) 91, 254
BceAI ACGGC 2 cut(s) 150, 657
BcgI CGANNNNNNTGC 2 cut(s) 324, 358
BciT130I CCWGG 3 cut(s) 32, 50, 164
BclI TGATCA 1 cut(s) 699
BcnI CCSGG 2 cut(s) 272, 586
BcoDI GTCTC 2 cut(s) 91, 895
BcuI ACTAGT 1 cut(s) 595
BfaI CTAG 3 cut(s) 44, 596, 962
BfuAI ACCTGC 1 cut(s) 790
BglI GCCNNNNNGGC 2 cut(s) 32, 366
BisI GCNGC 5 cut(s) 24, 180, 199, 370, 544
BlsI GCNGC 5 cut(s) 25, 181, 200, 371, 545
Bme1390I CCNGG 5 cut(s) 32, 50, 164, 272, 586
Bme18I GGWCC 2 cut(s) 215, 968
BmgT120I GGNCC 2 cut(s) 215, 968
BmiI GGNNCC 2 cut(s) 735, 969
BmrFI CCNGG 5 cut(s) 32, 50, 164, 272, 586
BmsI GCATC 3 cut(s) 4, 530, 931
BpiI GAAGAC 1 cut(s) 609
Bpu10I CCTNAGC 1 cut(s) 729
BpuEI CTTGAG 2 cut(s) 275, 371
BpuMI CCSGG 2 cut(s) 272, 586
Bsa29I ATCGAT 2 cut(s) 12, 396
BsaAI YACGTR 1 cut(s) 451
BsaHI GRCGYC 1 cut(s) 787
BsaJI CCNNGG 6 cut(s) 48, 87, 163, 218, 639, 737
BsaWI WCCGGW 4 cut(s) 67, 204, 616, 851
BsaXI ACNNNNNCTCC 2 cut(s) 877, 907
Bsc4I CCNNNNNNNGG 6 cut(s) 49, 260, 277, 584, 585, 851
Bse118I RCCGGY 3 cut(s) 67, 331, 616
Bse1I ACTGG 2 cut(s) 311, 499
Bse3DI GCAATG 1 cut(s) 24
BseAI TCCGGA 1 cut(s) 204
BseBI CCWGG 3 cut(s) 32, 50, 164
BseCI ATCGAT 2 cut(s) 12, 396
BseDI CCNNGG 6 cut(s) 48, 87, 163, 218, 639, 737
BseGI GGATG 4 cut(s) 83, 286, 315, 946
BseLI CCNNNNNNNGG 6 cut(s) 49, 260, 277, 584, 585, 851
BseMI GCAATG 1 cut(s) 24
BseMII CTCAG 1 cut(s) 743
BseNI ACTGG 2 cut(s) 311, 499
BseRI GAGGAG 1 cut(s) 28
BseXI GCAGC 4 cut(s) 35, 166, 210, 381
BsgI GTGCAG 1 cut(s) 530
Bsh1285I CGRYCG 2 cut(s) 400, 538
BshFI GGCC 2 cut(s) 35, 573
BshNI GGYRCC 1 cut(s) 733
BshTI ACCGGT 2 cut(s) 67, 616
BshVI ATCGAT 2 cut(s) 12, 396
BsiEI CGRYCG 2 cut(s) 400, 538
BsiHKAI GWGCWC 1 cut(s) 238
BsiSI CCGG 7 cut(s) 68, 205, 272, 332, 585, 617, 852
BslFI GGGAC 1 cut(s) 981
BslI CCNNNNNNNGG 6 cut(s) 49, 260, 277, 584, 585, 851
BsmAI GTCTC 2 cut(s) 91, 895
BsmFI GGGAC 1 cut(s) 981
BsmI GAATGC 1 cut(s) 335
BsnI GGCC 2 cut(s) 35, 573
Bsp1286I GDGCHC 1 cut(s) 238
Bsp13I TCCGGA 1 cut(s) 204
Bsp143I GATC 5 cut(s) 73, 341, 397, 441, 699
Bsp19I CCATGG 1 cut(s) 218
BspACI CCGC 4 cut(s) 28, 213, 275, 543
BspANI GGCC 2 cut(s) 35, 573
BspCNI CTCAG 1 cut(s) 742
BspDI ATCGAT 2 cut(s) 12, 396
BspEI TCCGGA 1 cut(s) 204
BspHI TCATGA 2 cut(s) 114, 654
BspLI GGNNCC 2 cut(s) 735, 969
BspMI ACCTGC 1 cut(s) 790
BspPI GGATC 1 cut(s) 81
BspQI GCTCTTC 1 cut(s) 762
BspT107I GGYRCC 1 cut(s) 733
BsrDI GCAATG 1 cut(s) 24
BsrFI RCCGGY 3 cut(s) 67, 331, 616
BsrI ACTGG 2 cut(s) 311, 499
BssAI RCCGGY 3 cut(s) 67, 331, 616
BssECI CCNNGG 6 cut(s) 48, 87, 163, 218, 639, 737
BssMI GATC 5 cut(s) 73, 341, 397, 441, 699
BssNAI GTATAC 1 cut(s) 746
BssNI GRCGYC 1 cut(s) 787
BssT1I CCWWGG 3 cut(s) 87, 218, 737
Bst1107I GTATAC 1 cut(s) 746
Bst2UI CCWGG 3 cut(s) 32, 50, 164
Bst4CI ACNGT 2 cut(s) 255, 889
Bst6I CTCTTC 1 cut(s) 762
BstACI GRCGYC 1 cut(s) 787
BstBAI YACGTR 1 cut(s) 451
BstC8I GCNNGC 2 cut(s) 28, 125
BstDEI CTNAG 2 cut(s) 729, 993
BstDSI CCRYGG 2 cut(s) 218, 639
BstF5I GGATG 4 cut(s) 83, 286, 315, 946
BstHHI GCGC 2 cut(s) 351, 360
BstKTI GATC 5 cut(s) 76, 344, 400, 444, 702
BstMAI GTCTC 2 cut(s) 91, 895
BstMBI GATC 5 cut(s) 73, 341, 397, 441, 699
BstMCI CGRYCG 2 cut(s) 400, 538
BstMWI GCNNNNNNNGC 8 cut(s) 23, 32, 242, 355, 357, 366, 378, 579
BstNI CCWGG 3 cut(s) 32, 50, 164
BstNSI RCATGY 1 cut(s) 784
BstSCI CCNGG 5 cut(s) 30, 48, 162, 270, 584
BstV1I GCAGC 4 cut(s) 35, 166, 210, 381
BstV2I GAAGAC 1 cut(s) 609
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BstZ17I GTATAC 1 cut(s) 746
Bsu15I ATCGAT 2 cut(s) 12, 396
BsuRI GGCC 2 cut(s) 35, 573
BsuTUI ATCGAT 2 cut(s) 12, 396
BtgI CCRYGG 2 cut(s) 218, 639
BtsCI GGATG 4 cut(s) 83, 286, 315, 946
BtsI GCAGTG 1 cut(s) 951
BtsIMutI CAGTG 1 cut(s) 951
BveI ACCTGC 1 cut(s) 790
Cac8I GCNNGC 2 cut(s) 28, 125
CciI TCATGA 2 cut(s) 114, 654
CfoI GCGC 2 cut(s) 351, 360
Cfr10I RCCGGY 3 cut(s) 67, 331, 616
Cfr13I GGNCC 2 cut(s) 215, 968
ClaI ATCGAT 2 cut(s) 12, 396
CseI GACGC 3 cut(s) 68, 322, 795
Csp6I GTAC 4 cut(s) 284, 304, 671, 803
CspAI ACCGGT 2 cut(s) 67, 616
CviAII CATG 7 cut(s) 115, 183, 219, 566, 655, 781, 952
CviQI GTAC 4 cut(s) 284, 304, 671, 803
DdeI CTNAG 2 cut(s) 729, 993
DpnI GATC 5 cut(s) 75, 343, 399, 443, 701
DpnII GATC 5 cut(s) 73, 341, 397, 441, 699
Eam1104I CTCTTC 1 cut(s) 762
EarI CTCTTC 1 cut(s) 762
EciI GGCGGA 1 cut(s) 228
Ecl136II GAGCTC 1 cut(s) 236
Eco130I CCWWGG 3 cut(s) 87, 218, 737
Eco24I GRGCYC 1 cut(s) 238
Eco47I GGWCC 2 cut(s) 215, 968
Eco53kI GAGCTC 1 cut(s) 236
Eco57I CTGAAG 1 cut(s) 126
EcoICRI GAGCTC 1 cut(s) 236
EcoO109I RGGNCCY 1 cut(s) 968
EcoRII CCWGG 3 cut(s) 30, 48, 162
EcoT14I CCWWGG 3 cut(s) 87, 218, 737
EcoT38I GRGCYC 1 cut(s) 238
ErhI CCWWGG 3 cut(s) 87, 218, 737
FaeI CATG 7 cut(s) 118, 186, 222, 569, 658, 784, 955
FalI AAGNNNNNCTT 2 cut(s) 744, 776
FaqI GGGAC 1 cut(s) 981
FatI CATG 7 cut(s) 114, 182, 218, 565, 654, 780, 951
FauI CCCGC 1 cut(s) 35
FbaI TGATCA 1 cut(s) 699
FblI GTMKAC 1 cut(s) 745
Fnu4HI GCNGC 5 cut(s) 24, 180, 199, 370, 544
FokI GGATG 4 cut(s) 70, 293, 322, 953
FriOI GRGCYC 1 cut(s) 238
Fsp4HI GCNGC 5 cut(s) 24, 180, 199, 370, 544
FspBI CTAG 3 cut(s) 44, 596, 962
GlaI GCGC 2 cut(s) 350, 359
GluI GCNGC 5 cut(s) 24, 180, 199, 370, 544
HaeIII GGCC 2 cut(s) 35, 573
HapII CCGG 7 cut(s) 68, 205, 272, 332, 585, 617, 852
HgaI GACGC 3 cut(s) 68, 322, 795
HhaI GCGC 2 cut(s) 351, 360
Hin1I GRCGYC 1 cut(s) 787
Hin1II CATG 7 cut(s) 118, 186, 222, 569, 658, 784, 955
Hin6I GCGC 2 cut(s) 349, 358
HinP1I GCGC 2 cut(s) 349, 358
HinfI GANTC 7 cut(s) 415, 477, 808, 831, 855, 865, 913
HpaII CCGG 7 cut(s) 68, 205, 272, 332, 585, 617, 852
HphI GGTGA 3 cut(s) 709, 784, 841
Hpy166II GTNNAC 2 cut(s) 746, 949
Hpy188I TCNGA 6 cut(s) 176, 240, 341, 346, 405, 592
Hpy188III TCNNGA 7 cut(s) 115, 205, 292, 412, 655, 812, 869
Hpy8I GTNNAC 2 cut(s) 746, 949
Hpy99I CGWCG 4 cut(s) 409, 474, 477, 789
HpyAV CCTTC 2 cut(s) 133, 981
HpyCH4III ACNGT 2 cut(s) 255, 889
HpyCH4IV ACGT 2 cut(s) 407, 450
HpyCH4V TGCA 5 cut(s) 17, 182, 251, 511, 944
HpyF10VI GCNNNNNNNGC 8 cut(s) 23, 32, 242, 355, 357, 366, 378, 579
HpyF3I CTNAG 2 cut(s) 729, 993
HpySE526I ACGT 2 cut(s) 407, 450
Hsp92I GRCGYC 1 cut(s) 787
Hsp92II CATG 7 cut(s) 118, 186, 222, 569, 658, 784, 955
HspAI GCGC 2 cut(s) 349, 358
Kpn2I TCCGGA 1 cut(s) 204
Ksp22I TGATCA 1 cut(s) 699
Kzo9I GATC 5 cut(s) 73, 341, 397, 441, 699
LguI GCTCTTC 1 cut(s) 762
LmnI GCTCC 4 cut(s) 132, 241, 346, 587
Lsp1109I GCAGC 4 cut(s) 35, 166, 210, 381
LweI GCATC 3 cut(s) 4, 530, 931
MaeI CTAG 3 cut(s) 44, 596, 962
MaeII ACGT 2 cut(s) 407, 450
MaeIII GTNAC 2 cut(s) 559, 883
MalI GATC 5 cut(s) 75, 343, 399, 443, 701
MboI GATC 5 cut(s) 73, 341, 397, 441, 699
MboII GAAGA 5 cut(s) 73, 500, 614, 749, 884
MflI RGATCY 1 cut(s) 73
MhlI GDGCHC 1 cut(s) 238
MluCI AATT 2 cut(s) 682, 934
MlyI GAGTC 3 cut(s) 825, 849, 922
MmeI TCCRAC 2 cut(s) 428, 570
MroI TCCGGA 1 cut(s) 204
MroXI GAANNNNTTC 1 cut(s) 756
MseI TTAA 1 cut(s) 192
MspI CCGG 7 cut(s) 68, 205, 272, 332, 585, 617, 852
MspR9I CCNGG 5 cut(s) 32, 50, 164, 272, 586
Mva1269I GAATGC 1 cut(s) 335
MvaI CCWGG 3 cut(s) 32, 50, 164
MwoI GCNNNNNNNGC 8 cut(s) 23, 32, 242, 355, 357, 366, 378, 579
NciI CCSGG 2 cut(s) 272, 586
NcoI CCATGG 1 cut(s) 218
NdeII GATC 5 cut(s) 73, 341, 397, 441, 699
NlaIII CATG 7 cut(s) 118, 186, 222, 569, 658, 784, 955
NlaIV GGNNCC 2 cut(s) 735, 969
NspI RCATGY 1 cut(s) 784
PagI TCATGA 2 cut(s) 114, 654
PciSI GCTCTTC 1 cut(s) 762
PcsI WCGNNNNNNNCGW 1 cut(s) 424
PctI GAATGC 1 cut(s) 335
PdmI GAANNNNTTC 1 cut(s) 756
PfeI GAWTC 4 cut(s) 415, 477, 808, 865
PinAI ACCGGT 2 cut(s) 67, 616
PkrI GCNGC 5 cut(s) 25, 181, 200, 371, 545
Ple19I CGATCG 1 cut(s) 400
PleI GAGTC 3 cut(s) 825, 849, 921
PpsI GAGTC 3 cut(s) 825, 849, 921
Ppu21I YACGTR 1 cut(s) 451
PpuMI RGGWCCY 1 cut(s) 968
PshBI ATTAAT 1 cut(s) 192
Psp124BI GAGCTC 1 cut(s) 238
Psp5II RGGWCCY 1 cut(s) 968
Psp6I CCWGG 3 cut(s) 30, 48, 162
PspGI CCWGG 3 cut(s) 30, 48, 162
PspN4I GGNNCC 2 cut(s) 735, 969
PspPI GGNCC 2 cut(s) 215, 968
PspPPI RGGWCCY 1 cut(s) 968
PsrI GAACNNNNNNTAC 2 cut(s) 654, 686
PsuI RGATCY 1 cut(s) 73
PvuI CGATCG 1 cut(s) 400
RsaI GTAC 4 cut(s) 285, 305, 672, 804
RsaNI GTAC 4 cut(s) 284, 304, 671, 803
SacI GAGCTC 1 cut(s) 238
SapI GCTCTTC 1 cut(s) 762
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 5 cut(s) 24, 180, 199, 370, 544
Sau3AI GATC 5 cut(s) 73, 341, 397, 441, 699
Sau96I GGNCC 2 cut(s) 215, 968
SchI GAGTC 3 cut(s) 825, 849, 922
ScrFI CCNGG 5 cut(s) 32, 50, 164, 272, 586
SduI GDGCHC 1 cut(s) 238
SfaNI GCATC 3 cut(s) 4, 530, 931
SgrAI CRCCGGYG 1 cut(s) 616
SinI GGWCC 2 cut(s) 215, 968
SmlI CTYRAG 2 cut(s) 290, 386
SmoI CTYRAG 2 cut(s) 290, 386
SpeI ACTAGT 1 cut(s) 595
Sse9I AATT 2 cut(s) 682, 934
SsiI CCGC 4 cut(s) 28, 213, 275, 543
SspI AATATT 1 cut(s) 720
SspMI CTAG 3 cut(s) 44, 596, 962
SstI GAGCTC 1 cut(s) 238
StyD4I CCNGG 5 cut(s) 30, 48, 162, 270, 584
StyI CCWWGG 3 cut(s) 87, 218, 737
TaaI ACNGT 2 cut(s) 255, 889
TaiI ACGT 2 cut(s) 410, 453
TaqI TCGA 7 cut(s) 12, 396, 418, 444, 475, 538, 984
TaqII GACCGA 1 cut(s) 524
TasI AATT 2 cut(s) 682, 934
TauI GCSGC 1 cut(s) 546
TfiI GAWTC 4 cut(s) 415, 477, 808, 865
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TscAI CASTG 1 cut(s) 951
TseI GCWGC 4 cut(s) 23, 179, 198, 369
TspDTI ATGAA 4 cut(s) 103, 493, 507, 791
TspGWI ACGGA 3 cut(s) 458, 848, 896
TspRI CASTG 1 cut(s) 951
VpaK11BI GGWCC 2 cut(s) 215, 968
VspI ATTAAT 1 cut(s) 192
XapI RAATTY 1 cut(s) 934
XceI RCATGY 1 cut(s) 784
XmiI GTMKAC 1 cut(s) 745
XmnI GAANNNNTTC 1 cut(s) 756
XspI CTAG 3 cut(s) 44, 596, 962
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.