Rmu_sc0001418.1_g000003

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001418.1
OG0000308
Physical Location & Seq
Reverse (-)
13967 .. 14601
635 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001418.1_g000003.1.cds

Sequence Viewer

Length: 507 bp
atggtgggaaagctactcacagcgagagactatactcgctgctcgttcatggggatgttccgatctgcatggagggtgaattacactcttagggttgaggaaaccagagaagatgatcaggttctcttctatttttcggatccgactgacagagctagggtttggaaaggaggaccatggggcttcaatagggctccgatagcaattgcagaatatgatggtgggccagatctcgatggtgccattgaagacgtcgtcatactggatgacgttattaggtgttccccctgcctttcgcagcgattctgggttgaagatgatgtgcagtttctggtgaagttcaattatgacaaggtttttgggcgttgtgggcggtgtggctttgttacccacgttggcctcctatgttccggcccggagtcggaggaggttgcaggtgtggtggtgcaaccgtctgcactagcggtgttgcgagatgagccaagaaccagttcaaatggcaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

168

Amino Acids

18.9

Weight (kDa)

4.95

Isoelectric Point (pI)

35.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 425
AatII GACGTC 1 cut(s) 255
Acc36I ACCTGC 1 cut(s) 425
AccB1I GGYRCC 1 cut(s) 239
AciI CCGC 2 cut(s) 373, 464
AclWI GGATC 2 cut(s) 134, 147
AcyI GRCGYC 1 cut(s) 252
AfiI CCNNNNNNNGG 1 cut(s) 421
AgsI TTSAA 5 cut(s) 187, 248, 314, 343, 495
AjuI GAANNNNNNNTTGG 2 cut(s) 475, 507
AluBI AGCT 2 cut(s) 13, 155
AluI AGCT 2 cut(s) 13, 155
Alw26I GTCTC 1 cut(s) 21
AlwI GGATC 2 cut(s) 134, 147
AlwNI CAGNNNCTG 1 cut(s) 331
AoxI GGCC 3 cut(s) 224, 397, 412
ApeKI GCWGC 2 cut(s) 39, 298
ArsI GACNNNNNNTTYG 2 cut(s) 341, 373
Asp700I GAANNNNTTC 1 cut(s) 490
AspS9I GGNCC 3 cut(s) 173, 224, 413
AsuC2I CCSGG 1 cut(s) 416
AsuHPI GGTGA 2 cut(s) 88, 346
AvaII GGWCC 1 cut(s) 173
BamHI GGATCC 1 cut(s) 139
BanI GGYRCC 1 cut(s) 239
BanII GRGCYC 1 cut(s) 196
BbsI GAAGAC 1 cut(s) 255
BbvI GCAGC 2 cut(s) 26, 310
BccI CCATC 2 cut(s) 212, 230
BclI TGATCA 1 cut(s) 115
BcnI CCSGG 1 cut(s) 416
BcoDI GTCTC 1 cut(s) 21
BfaI CTAG 2 cut(s) 156, 461
BfuAI ACCTGC 1 cut(s) 425
BglII AGATCT 1 cut(s) 229
BisI GCNGC 2 cut(s) 40, 299
BlsI GCNGC 2 cut(s) 41, 300
Bme1390I CCNGG 1 cut(s) 416
Bme18I GGWCC 1 cut(s) 173
BmgT120I GGNCC 3 cut(s) 173, 224, 413
BmiI GGNNCC 3 cut(s) 141, 195, 241
BmrFI CCNGG 1 cut(s) 416
BpiI GAAGAC 1 cut(s) 255
BpuMI CCSGG 1 cut(s) 416
BsaHI GRCGYC 1 cut(s) 252
BsaJI CCNNGG 1 cut(s) 176
Bsc4I CCNNNNNNNGG 1 cut(s) 421
Bse1I ACTGG 2 cut(s) 267, 489
BseDI CCNNGG 1 cut(s) 176
BseGI GGATG 2 cut(s) 60, 271
BseLI CCNNNNNNNGG 1 cut(s) 421
BseNI ACTGG 2 cut(s) 267, 489
BseRI GAGGAG 1 cut(s) 440
BseXI GCAGC 2 cut(s) 26, 310
BsgI GTGCAG 2 cut(s) 344, 441
BshFI GGCC 3 cut(s) 226, 399, 414
BshNI GGYRCC 1 cut(s) 239
BsiSI CCGG 2 cut(s) 411, 416
BslI CCNNNNNNNGG 1 cut(s) 421
BsmAI GTCTC 1 cut(s) 21
BsnI GGCC 3 cut(s) 226, 399, 414
Bsp1286I GDGCHC 1 cut(s) 196
Bsp143I GATC 4 cut(s) 62, 115, 139, 229
Bsp19I CCATGG 1 cut(s) 176
BspACI CCGC 2 cut(s) 373, 464
BspANI GGCC 3 cut(s) 226, 399, 414
BspLI GGNNCC 3 cut(s) 141, 195, 241
BspMI ACCTGC 1 cut(s) 425
BspPI GGATC 2 cut(s) 134, 147
BspT107I GGYRCC 1 cut(s) 239
BsrI ACTGG 2 cut(s) 267, 489
BssECI CCNNGG 1 cut(s) 176
BssMI GATC 4 cut(s) 62, 115, 139, 229
BssNI GRCGYC 1 cut(s) 252
BssT1I CCWWGG 1 cut(s) 176
Bst4CI ACNGT 1 cut(s) 453
Bst6I CTCTTC 1 cut(s) 131
BstACI GRCGYC 1 cut(s) 252
BstDEI CTNAG 1 cut(s) 89
BstDSI CCRYGG 1 cut(s) 176
BstF5I GGATG 2 cut(s) 60, 271
BstKTI GATC 4 cut(s) 65, 118, 142, 232
BstMAI GTCTC 1 cut(s) 21
BstMBI GATC 4 cut(s) 62, 115, 139, 229
BstMWI GCNNNNNNNGC 3 cut(s) 200, 370, 478
BstSCI CCNGG 1 cut(s) 414
BstV1I GCAGC 2 cut(s) 26, 310
BstV2I GAAGAC 1 cut(s) 255
BstX2I RGATCY 2 cut(s) 139, 229
BstYI RGATCY 2 cut(s) 139, 229
BsuRI GGCC 3 cut(s) 226, 399, 414
BtgI CCRYGG 1 cut(s) 176
BtsCI GGATG 2 cut(s) 60, 271
BveI ACCTGC 1 cut(s) 425
CaiI CAGNNNCTG 1 cut(s) 331
Cfr13I GGNCC 3 cut(s) 173, 224, 413
CviAII CATG 3 cut(s) 49, 69, 177
CviJI RGCY 9 cut(s) 13, 155, 183, 194, 226, 381, 399, 414, 481
CviKI_1 RGCY 9 cut(s) 13, 155, 183, 194, 226, 381, 399, 414, 481
DdeI CTNAG 1 cut(s) 89
DpnI GATC 4 cut(s) 64, 117, 141, 231
DpnII GATC 4 cut(s) 62, 115, 139, 229
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
Eco130I CCWWGG 1 cut(s) 176
Eco24I GRGCYC 1 cut(s) 196
Eco47I GGWCC 1 cut(s) 173
EcoT14I CCWWGG 1 cut(s) 176
EcoT38I GRGCYC 1 cut(s) 196
ErhI CCWWGG 1 cut(s) 176
FaeI CATG 3 cut(s) 52, 72, 180
FaiI YATR 8 cut(s) 33, 50, 70, 178, 216, 260, 348, 406
FatI CATG 3 cut(s) 48, 68, 176
FbaI TGATCA 1 cut(s) 115
Fnu4HI GCNGC 2 cut(s) 40, 299
FokI GGATG 2 cut(s) 67, 278
FriOI GRGCYC 1 cut(s) 196
Fsp4HI GCNGC 2 cut(s) 40, 299
FspBI CTAG 2 cut(s) 156, 461
GluI GCNGC 2 cut(s) 40, 299
HaeIII GGCC 3 cut(s) 226, 399, 414
HapII CCGG 2 cut(s) 411, 416
Hin1I GRCGYC 1 cut(s) 252
Hin1II CATG 3 cut(s) 52, 72, 180
HinfI GANTC 2 cut(s) 303, 419
HpaII CCGG 2 cut(s) 411, 416
HphI GGTGA 2 cut(s) 88, 346
Hpy188I TCNGA 5 cut(s) 62, 139, 144, 198, 424
Hpy188III TCNNGA 1 cut(s) 233
Hpy99I CGWCG 1 cut(s) 257
HpyCH4III ACNGT 1 cut(s) 453
HpyCH4IV ACGT 3 cut(s) 252, 270, 393
HpyCH4V TGCA 6 cut(s) 68, 209, 325, 434, 448, 458
HpyF10VI GCNNNNNNNGC 3 cut(s) 200, 370, 478
HpyF3I CTNAG 1 cut(s) 89
HpySE526I ACGT 3 cut(s) 252, 270, 393
Hsp92I GRCGYC 1 cut(s) 252
Hsp92II CATG 3 cut(s) 52, 72, 180
Ksp22I TGATCA 1 cut(s) 115
Kzo9I GATC 4 cut(s) 62, 115, 139, 229
LmnI GCTCC 1 cut(s) 199
Lsp1109I GCAGC 2 cut(s) 26, 310
MaeI CTAG 2 cut(s) 156, 461
MaeII ACGT 3 cut(s) 252, 270, 393
MaeIII GTNAC 1 cut(s) 385
MalI GATC 4 cut(s) 64, 117, 141, 231
MboI GATC 4 cut(s) 62, 115, 139, 229
MboII GAAGA 4 cut(s) 118, 122, 260, 326
MfeI CAATTG 1 cut(s) 204
MflI RGATCY 2 cut(s) 139, 229
MhlI GDGCHC 1 cut(s) 196
MluCI AATT 3 cut(s) 79, 204, 343
MlyI GAGTC 1 cut(s) 428
MmeI TCCRAC 2 cut(s) 167, 402
MnlI CCTC 6 cut(s) 66, 91, 164, 410, 418, 421
MroXI GAANNNNTTC 1 cut(s) 490
MslI CAYNNNNRTG 1 cut(s) 53
MspI CCGG 2 cut(s) 411, 416
MspR9I CCNGG 1 cut(s) 416
MunI CAATTG 1 cut(s) 204
MwoI GCNNNNNNNGC 3 cut(s) 200, 370, 478
NciI CCSGG 1 cut(s) 416
NcoI CCATGG 1 cut(s) 176
NdeII GATC 4 cut(s) 62, 115, 139, 229
NlaIII CATG 3 cut(s) 52, 72, 180
NlaIV GGNNCC 3 cut(s) 141, 195, 241
PaqCI CACCTGC 1 cut(s) 425
PdmI GAANNNNTTC 1 cut(s) 490
PfeI GAWTC 1 cut(s) 303
PflFI GACNNNGTC 1 cut(s) 254
PkrI GCNGC 2 cut(s) 41, 300
PleI GAGTC 1 cut(s) 427
PpsI GAGTC 1 cut(s) 427
PspN4I GGNNCC 3 cut(s) 141, 195, 241
PspPI GGNCC 3 cut(s) 173, 224, 413
PstNI CAGNNNCTG 1 cut(s) 331
PsuI RGATCY 2 cut(s) 139, 229
PsyI GACNNNGTC 1 cut(s) 254
RseI CAYNNNNRTG 1 cut(s) 53
SatI GCNGC 2 cut(s) 40, 299
Sau3AI GATC 4 cut(s) 62, 115, 139, 229
Sau96I GGNCC 3 cut(s) 173, 224, 413
SchI GAGTC 1 cut(s) 428
ScrFI CCNGG 1 cut(s) 416
SduI GDGCHC 1 cut(s) 196
SinI GGWCC 1 cut(s) 173
SmiMI CAYNNNNRTG 1 cut(s) 53
Sse9I AATT 3 cut(s) 79, 204, 343
SsiI CCGC 2 cut(s) 373, 464
SspMI CTAG 2 cut(s) 156, 461
StyD4I CCNGG 1 cut(s) 414
StyI CCWWGG 1 cut(s) 176
TaaI ACNGT 1 cut(s) 453
TaiI ACGT 3 cut(s) 255, 273, 396
TaqI TCGA 1 cut(s) 234
TasI AATT 3 cut(s) 79, 204, 343
TfiI GAWTC 1 cut(s) 303
TseI GCWGC 2 cut(s) 39, 298
TspDTI ATGAA 1 cut(s) 37
Tth111I GACNNNGTC 1 cut(s) 254
VpaK11BI GGWCC 1 cut(s) 173
XmnI GAANNNNTTC 1 cut(s) 490
XspI CTAG 2 cut(s) 156, 461
ZraI GACGTC 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.