Rmu_sc0000939.1_g000034

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000939.1
OG0000308
Physical Location & Seq
Forward (+)
187318 .. 187848
531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000939.1_g000034.1.cds

Sequence Viewer

Length: 531 bp
atggaactggaaaattgtctgtttctggttttttttttcaacttcatcaaggaaccgttgaaaccgaaaaaccgatccgaaggttctcggttccggttcccgtcggttctggcactatcaactacaacaaccgaaccgaagttccctttccggttccggcgaatttttgcattttcagaaccgaatccagccctatcccctgctattgcagaagggaaacggcctgttgacctgcttccgtccaagggagtgcgacaaccggaagttttcatgctcggaaaactattgactgtaagggagtatacacgccggtcgttcataggaatgttcaagtctgcgtggagggttaatggaactcttcgtgttgaagaagctggagaagatgatcgtgtcctgatttcattttcagatccaatggacagggctagggtttggaagggcggcccttggggtttcaatcgagctccgattgctttggagaagtatgatggagtgagcccggtgctgtcagtaccgctgcagaagtcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283

Protein Analysis

176

Amino Acids

20.12

Weight (kDa)

10.05

Isoelectric Point (pI)

51.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 240
AccI GTMKAC 1 cut(s) 302
AciI CCGC 2 cut(s) 441, 515
AclWI GGATC 2 cut(s) 69, 404
AcsI RAATTY 1 cut(s) 162
AfaI GTAC 1 cut(s) 513
AfiI CCNNNNNNNGG 1 cut(s) 245
AgsI TTSAA 5 cut(s) 40, 61, 331, 368, 457
AloI GAACNNNNNNTCC 2 cut(s) 126, 158
AluBI AGCT 2 cut(s) 374, 464
AluI AGCT 2 cut(s) 374, 464
Alw21I GWGCWC 1 cut(s) 466
AlwI GGATC 2 cut(s) 69, 404
AoxI GGCC 2 cut(s) 221, 442
ApeKI GCWGC 1 cut(s) 517
ApoI RAATTY 1 cut(s) 162
AspS9I GGNCC 1 cut(s) 443
AsuC2I CCSGG 1 cut(s) 500
BanII GRGCYC 2 cut(s) 466, 500
Bbv12I GWGCWC 1 cut(s) 466
BbvI GCAGC 1 cut(s) 504
BccI CCATC 1 cut(s) 482
BceAI ACGGC 1 cut(s) 236
BcnI CCSGG 1 cut(s) 500
BfaI CTAG 1 cut(s) 426
BfmI CTRYAG 1 cut(s) 518
BfuAI ACCTGC 1 cut(s) 240
BisI GCNGC 2 cut(s) 442, 518
BlsI GCNGC 2 cut(s) 443, 519
Bme1390I CCNGG 1 cut(s) 500
BmgT120I GGNCC 1 cut(s) 443
BmiI GGNNCC 4 cut(s) 54, 92, 98, 155
BmrFI CCNGG 1 cut(s) 500
BpmI CTGGAG 1 cut(s) 396
BpuMI CCSGG 1 cut(s) 500
BsaJI CCNNGG 2 cut(s) 243, 446
BsaWI WCCGGW 3 cut(s) 93, 150, 259
Bsc4I CCNNNNNNNGG 1 cut(s) 245
Bse118I RCCGGY 1 cut(s) 309
Bse1I ACTGG 1 cut(s) 12
BseDI CCNNGG 2 cut(s) 243, 446
BseLI CCNNNNNNNGG 1 cut(s) 245
BseNI ACTGG 1 cut(s) 12
BseXI GCAGC 1 cut(s) 504
Bsh1285I CGRYCG 1 cut(s) 314
BshFI GGCC 2 cut(s) 223, 444
BsiEI CGRYCG 1 cut(s) 314
BsiHKAI GWGCWC 1 cut(s) 466
BsiSI CCGG 6 cut(s) 94, 151, 157, 260, 310, 500
BslI CCNNNNNNNGG 1 cut(s) 245
BsnI GGCC 2 cut(s) 223, 444
Bsp1286I GDGCHC 2 cut(s) 466, 500
Bsp143I GATC 3 cut(s) 74, 385, 409
BspACI CCGC 2 cut(s) 441, 515
BspANI GGCC 2 cut(s) 223, 444
BspLI GGNNCC 4 cut(s) 54, 92, 98, 155
BspMAI CTGCAG 1 cut(s) 522
BspMI ACCTGC 1 cut(s) 240
BspPI GGATC 2 cut(s) 69, 404
BsrFI RCCGGY 1 cut(s) 309
BsrI ACTGG 1 cut(s) 12
BssAI RCCGGY 1 cut(s) 309
BssECI CCNNGG 2 cut(s) 243, 446
BssMI GATC 3 cut(s) 74, 385, 409
BssNAI GTATAC 1 cut(s) 303
BssT1I CCWWGG 2 cut(s) 243, 446
Bst1107I GTATAC 1 cut(s) 303
Bst4CI ACNGT 2 cut(s) 57, 292
Bst6I CTCTTC 1 cut(s) 363
BstKTI GATC 3 cut(s) 77, 388, 412
BstMBI GATC 3 cut(s) 74, 385, 409
BstMCI CGRYCG 1 cut(s) 314
BstMWI GCNNNNNNNGC 1 cut(s) 470
BstSCI CCNGG 1 cut(s) 498
BstSFI CTRYAG 1 cut(s) 518
BstV1I GCAGC 1 cut(s) 504
BstX2I RGATCY 1 cut(s) 409
BstYI RGATCY 1 cut(s) 409
BstZ17I GTATAC 1 cut(s) 303
BsuRI GGCC 2 cut(s) 223, 444
BveI ACCTGC 1 cut(s) 240
Cfr10I RCCGGY 1 cut(s) 309
Cfr13I GGNCC 1 cut(s) 443
Csp6I GTAC 1 cut(s) 512
CviAII CATG 1 cut(s) 271
CviJI RGCY 7 cut(s) 191, 223, 374, 425, 444, 464, 498
CviKI_1 RGCY 7 cut(s) 191, 223, 374, 425, 444, 464, 498
CviQI GTAC 1 cut(s) 512
DpnI GATC 3 cut(s) 76, 387, 411
DpnII GATC 3 cut(s) 74, 385, 409
Eam1104I CTCTTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 363
Ecl136II GAGCTC 1 cut(s) 464
Eco130I CCWWGG 2 cut(s) 243, 446
Eco24I GRGCYC 2 cut(s) 466, 500
Eco53kI GAGCTC 1 cut(s) 464
EcoICRI GAGCTC 1 cut(s) 464
EcoT14I CCWWGG 2 cut(s) 243, 446
EcoT38I GRGCYC 2 cut(s) 466, 500
ErhI CCWWGG 2 cut(s) 243, 446
FaeI CATG 1 cut(s) 274
FaiI YATR 5 cut(s) 272, 303, 320, 486, 529
FatI CATG 1 cut(s) 270
FblI GTMKAC 1 cut(s) 302
Fnu4HI GCNGC 2 cut(s) 442, 518
FriOI GRGCYC 2 cut(s) 466, 500
Fsp4HI GCNGC 2 cut(s) 442, 518
FspBI CTAG 1 cut(s) 426
GluI GCNGC 2 cut(s) 442, 518
GsuI CTGGAG 1 cut(s) 396
HaeIII GGCC 2 cut(s) 223, 444
HapII CCGG 6 cut(s) 94, 151, 157, 260, 310, 500
Hin1II CATG 1 cut(s) 274
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HinfI GANTC 1 cut(s) 184
HpaII CCGG 6 cut(s) 94, 151, 157, 260, 310, 500
Hpy166II GTNNAC 2 cut(s) 229, 303
Hpy188I TCNGA 5 cut(s) 79, 178, 278, 409, 468
Hpy188III TCNNGA 1 cut(s) 394
Hpy8I GTNNAC 2 cut(s) 229, 303
Hpy99I CGWCG 1 cut(s) 106
HpyAV CCTTC 3 cut(s) 74, 206, 430
HpyCH4III ACNGT 2 cut(s) 57, 292
HpyCH4V TGCA 3 cut(s) 170, 209, 520
HpyF10VI GCNNNNNNNGC 1 cut(s) 470
Hsp92II CATG 1 cut(s) 274
Kzo9I GATC 3 cut(s) 74, 385, 409
LmnI GCTCC 1 cut(s) 469
Lsp1109I GCAGC 1 cut(s) 504
MaeI CTAG 1 cut(s) 426
MalI GATC 3 cut(s) 76, 387, 411
MboI GATC 3 cut(s) 74, 385, 409
MboII GAAGA 3 cut(s) 350, 380, 392
MflI RGATCY 1 cut(s) 409
MhlI GDGCHC 2 cut(s) 466, 500
MluCI AATT 2 cut(s) 13, 162
MnlI CCTC 1 cut(s) 336
MseI TTAA 1 cut(s) 348
MslI CAYNNNNRTG 1 cut(s) 323
MspA1I CMGCKG 1 cut(s) 517
MspI CCGG 6 cut(s) 94, 151, 157, 260, 310, 500
MspR9I CCNGG 1 cut(s) 500
MwoI GCNNNNNNNGC 1 cut(s) 470
NciI CCSGG 1 cut(s) 500
NdeII GATC 3 cut(s) 74, 385, 409
NlaIII CATG 1 cut(s) 274
NlaIV GGNNCC 4 cut(s) 54, 92, 98, 155
PfeI GAWTC 1 cut(s) 184
PkrI GCNGC 2 cut(s) 443, 519
Psp124BI GAGCTC 1 cut(s) 466
PspN4I GGNNCC 4 cut(s) 54, 92, 98, 155
PspPI GGNCC 1 cut(s) 443
PstI CTGCAG 1 cut(s) 522
PsuI RGATCY 1 cut(s) 409
RsaI GTAC 1 cut(s) 513
RsaNI GTAC 1 cut(s) 512
RseI CAYNNNNRTG 1 cut(s) 323
SacI GAGCTC 1 cut(s) 466
SaqAI TTAA 1 cut(s) 348
SatI GCNGC 2 cut(s) 442, 518
Sau3AI GATC 3 cut(s) 74, 385, 409
Sau96I GGNCC 1 cut(s) 443
ScrFI CCNGG 1 cut(s) 500
SduI GDGCHC 2 cut(s) 466, 500
SetI ASST 4 cut(s) 85, 234, 376, 466
SfcI CTRYAG 1 cut(s) 518
SmiMI CAYNNNNRTG 1 cut(s) 323
Sse9I AATT 2 cut(s) 13, 162
SsiI CCGC 2 cut(s) 441, 515
SspMI CTAG 1 cut(s) 426
SstI GAGCTC 1 cut(s) 466
StyD4I CCNGG 1 cut(s) 498
StyI CCWWGG 2 cut(s) 243, 446
TaaI ACNGT 2 cut(s) 57, 292
TaqI TCGA 1 cut(s) 460
TasI AATT 2 cut(s) 13, 162
TauI GCSGC 1 cut(s) 444
TfiI GAWTC 1 cut(s) 184
Tru1I TTAA 1 cut(s) 348
Tru9I TTAA 1 cut(s) 348
TseI GCWGC 1 cut(s) 517
TspDTI ATGAA 4 cut(s) 34, 259, 307, 390
TspGWI ACGGA 1 cut(s) 228
XapI RAATTY 1 cut(s) 162
XmiI GTMKAC 1 cut(s) 302
XspI CTAG 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.